Genes within 1Mb (chr1:52607884:CT:C):

View on , UCSC , GTEx , gnomAD


Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000078618 NRDC 728947 eQTL 6.32e-05 0.0379 0.00943 0.0 0.0 0.2
ENSG00000116157 GPX7 5513 eQTL 1.05e-110 -0.6 0.0234 0.00172 0.0181 0.2
ENSG00000116171 SCP2 -319392 eQTL 4.49e-02 -0.0389 0.0194 0.0 0.0 0.2
ENSG00000134744 TUT4 54397 eQTL 4.07e-02 -0.0328 0.016 0.0 0.0 0.2
ENSG00000154222 CC2D1B 241691 eQTL 9.08e-25 -0.214 0.0202 0.0 0.0 0.2
ENSG00000157077 ZFYVE9 465790 eQTL 7.18e-02 -0.0523 0.029 0.00101 0.0 0.2
ENSG00000162384 CZIB -612750 eQTL 1.39e-04 -0.0657 0.0172 0.00257 0.00161 0.2
ENSG00000182183 SHISAL2A -25284 eQTL 3.45e-02 -0.044 0.0208 0.0 0.0 0.2
ENSG00000198841 KTI12 574068 eQTL 5.55e-04 0.0707 0.0204 0.0 0.0 0.2
ENSG00000226147 TUBBP10 -386842 eQTL 1.19e-02 -0.12 0.0476 0.0 0.0 0.2


Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000078618 NRDC 728947 2.69e-07 1.16e-07 4.47e-08 1.81e-07 9.91e-08 9.87e-08 1.44e-07 5.24e-08 1.4e-07 4.38e-08 1.59e-07 8.03e-08 1.33e-07 6.38e-08 5.55e-08 7.26e-08 5.1e-08 1.18e-07 5.19e-08 3.29e-08 1.04e-07 1.27e-07 1.34e-07 4.99e-08 1.31e-07 1.09e-07 1.12e-07 9.32e-08 9.88e-08 1.1e-07 9.58e-08 3.19e-08 2.74e-08 8.55e-08 7.66e-08 3.97e-08 5.54e-08 8.28e-08 8.42e-08 3.64e-08 3.16e-08 1.33e-07 4.01e-08 0.0 1.01e-07 1.68e-08 1.27e-07 4.82e-09 4.72e-08
ENSG00000116157 GPX7 5513 0.00062 0.000697 0.000163 0.000323 0.000292 0.000339 0.000575 0.000256 0.000751 0.00032 0.000837 0.000477 0.00105 0.000445 0.000176 0.000635 0.000325 0.000493 0.000305 0.000225 0.000534 0.000945 0.000496 0.000323 0.000895 0.000483 0.000607 0.000423 0.000599 0.000294 0.000545 0.000116 0.000107 0.000218 0.000218 0.000167 9.11e-05 8.44e-05 0.000153 0.000102 5.14e-05 0.000699 9.14e-05 1.28e-05 0.000108 0.000223 0.000148 0.000103 6.7e-05
ENSG00000154222 CC2D1B 241691 3.64e-06 2.53e-06 8.15e-07 3.09e-06 3.73e-07 1.19e-06 2.08e-06 3.26e-07 1.75e-06 7.24e-07 1.95e-06 1.05e-06 3.44e-06 1.36e-06 9e-07 1.22e-06 9.81e-07 1.51e-06 5.66e-07 1.16e-06 9.06e-07 2.15e-06 2.35e-06 1.24e-06 2.41e-06 1.1e-06 1.06e-06 1.32e-06 1.71e-06 1.31e-06 7.84e-07 2.78e-07 3.55e-07 1.68e-06 1.23e-06 9.75e-07 9.55e-07 3.25e-07 1.21e-06 5.75e-07 2.88e-07 2.62e-06 5.97e-07 9.66e-08 3.73e-07 6.22e-07 4.08e-07 8.96e-08 6.03e-08
ENSG00000157077 ZFYVE9 465790 9.83e-07 4.63e-07 2.62e-07 3.38e-07 1.02e-07 2.54e-07 5.49e-07 5.43e-08 2.76e-07 1.65e-07 3.92e-07 1.62e-07 6.27e-07 1.49e-07 1.78e-07 1.76e-07 5.73e-08 3.79e-07 1.7e-07 6.16e-08 1.8e-07 2.99e-07 3.7e-07 4.37e-08 3.7e-07 1.51e-07 1.39e-07 2.44e-07 1.58e-07 2.1e-07 1.59e-07 3.89e-08 3.21e-08 2.98e-07 3.7e-07 5.23e-08 1.01e-07 9.22e-08 4.82e-08 7.39e-08 6e-08 3.55e-07 4.24e-08 1.16e-08 2.82e-08 1.55e-08 8.93e-08 3.86e-09 4.79e-08
ENSG00000157193 \N -720186 2.69e-07 1.16e-07 4.48e-08 1.81e-07 9.91e-08 9.61e-08 1.49e-07 5.24e-08 1.4e-07 4.38e-08 1.59e-07 8.03e-08 1.33e-07 6.56e-08 5.53e-08 7.26e-08 5.1e-08 1.18e-07 5.21e-08 3.29e-08 1.04e-07 1.27e-07 1.34e-07 4.99e-08 1.31e-07 1.09e-07 1.12e-07 9.32e-08 9.88e-08 1.1e-07 9.58e-08 3.19e-08 2.74e-08 8.44e-08 7.36e-08 3.97e-08 4.99e-08 8.28e-08 8.42e-08 3.59e-08 3.07e-08 1.33e-07 3.93e-08 0.0 1.01e-07 1.67e-08 1.27e-07 4.82e-09 4.72e-08
ENSG00000162384 CZIB -612750 3.07e-07 1.36e-07 6.57e-08 2.28e-07 8.92e-08 8.33e-08 1.99e-07 5.35e-08 1.45e-07 4.94e-08 1.52e-07 8.36e-08 1.69e-07 7.95e-08 6.18e-08 7.5e-08 3.88e-08 1.51e-07 6.32e-08 4.03e-08 1.22e-07 1.26e-07 1.58e-07 4.54e-08 1.4e-07 1.19e-07 1.07e-07 1.04e-07 1.08e-07 1.02e-07 9.92e-08 3.52e-08 2.74e-08 9.08e-08 4.41e-08 3.93e-08 5.01e-08 8.78e-08 7.23e-08 3.18e-08 4.19e-08 1.46e-07 5.24e-08 0.0 8.03e-08 1.8e-08 1.24e-07 4.6e-09 4.61e-08