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Genes within 1Mb (chr1:54209865:G:A):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000006555 TTC22 -591458 sc-eQTL 1.60e-01 0.253 0.179 0.052 CD4_CTL L2
ENSG00000058799 YIPF1 320067 sc-eQTL 6.17e-01 0.0959 0.191 0.052 CD4_CTL L2
ENSG00000058804 NDC1 371402 sc-eQTL 6.47e-01 0.0864 0.188 0.052 CD4_CTL L2
ENSG00000081870 HSPB11 263936 sc-eQTL 4.36e-01 -0.153 0.196 0.052 CD4_CTL L2
ENSG00000116205 TCEANC2 156281 sc-eQTL 5.51e-03 -0.511 0.182 0.052 CD4_CTL L2
ENSG00000116209 TMEM59 156361 sc-eQTL 9.61e-01 0.0082 0.169 0.052 CD4_CTL L2
ENSG00000116212 LRRC42 263780 sc-eQTL 5.80e-01 -0.104 0.187 0.052 CD4_CTL L2
ENSG00000116221 MRPL37 25824 sc-eQTL 7.26e-01 0.0727 0.208 0.052 CD4_CTL L2
ENSG00000157193 LRP8 881396 sc-eQTL 7.59e-01 0.0592 0.193 0.052 CD4_CTL L2
ENSG00000157216 SSBP3 -203614 sc-eQTL 4.62e-02 0.254 0.126 0.052 CD4_CTL L2
ENSG00000162384 CZIB 989231 sc-eQTL 3.88e-01 -0.174 0.201 0.052 CD4_CTL L2
ENSG00000162385 MAGOH 971347 sc-eQTL 4.98e-01 -0.125 0.184 0.052 CD4_CTL L2
ENSG00000243725 TTC4 -505996 sc-eQTL 6.44e-01 -0.0909 0.196 0.052 CD4_CTL L2
ENSG00000006555 TTC22 -591458 sc-eQTL 4.92e-01 0.136 0.198 0.051 CD8_TCM L2
ENSG00000058799 YIPF1 320067 sc-eQTL 9.40e-01 0.016 0.212 0.051 CD8_TCM L2
ENSG00000058804 NDC1 371402 sc-eQTL 5.72e-01 0.111 0.197 0.051 CD8_TCM L2
ENSG00000081870 HSPB11 263936 sc-eQTL 9.78e-01 -0.00506 0.183 0.051 CD8_TCM L2
ENSG00000116205 TCEANC2 156281 sc-eQTL 2.17e-01 -0.246 0.199 0.051 CD8_TCM L2
ENSG00000116209 TMEM59 156361 sc-eQTL 5.68e-01 0.1 0.175 0.051 CD8_TCM L2
ENSG00000116212 LRRC42 263780 sc-eQTL 3.12e-01 0.21 0.207 0.051 CD8_TCM L2
ENSG00000116221 MRPL37 25824 sc-eQTL 9.59e-01 0.0103 0.199 0.051 CD8_TCM L2
ENSG00000157193 LRP8 881396 sc-eQTL 8.88e-02 -0.314 0.183 0.051 CD8_TCM L2
ENSG00000157216 SSBP3 -203614 sc-eQTL 9.95e-01 0.00114 0.173 0.051 CD8_TCM L2
ENSG00000162384 CZIB 989231 sc-eQTL 4.10e-01 0.163 0.197 0.051 CD8_TCM L2
ENSG00000162385 MAGOH 971347 sc-eQTL 1.32e-01 0.281 0.186 0.051 CD8_TCM L2
ENSG00000243725 TTC4 -505996 sc-eQTL 3.62e-01 -0.186 0.203 0.051 CD8_TCM L2
ENSG00000006555 TTC22 -591458 sc-eQTL 6.79e-01 -0.0819 0.198 0.051 NK_CD56bright L2
ENSG00000058799 YIPF1 320067 sc-eQTL 8.30e-01 0.0447 0.208 0.051 NK_CD56bright L2
ENSG00000058804 NDC1 371402 sc-eQTL 1.14e-01 -0.308 0.194 0.051 NK_CD56bright L2
ENSG00000081870 HSPB11 263936 sc-eQTL 1.51e-01 -0.284 0.197 0.051 NK_CD56bright L2
ENSG00000116133 DHCR24 -677330 sc-eQTL 4.55e-01 0.131 0.174 0.051 NK_CD56bright L2
ENSG00000116205 TCEANC2 156281 sc-eQTL 5.55e-02 0.352 0.183 0.051 NK_CD56bright L2
ENSG00000116209 TMEM59 156361 sc-eQTL 8.52e-01 -0.0337 0.18 0.051 NK_CD56bright L2
ENSG00000116212 LRRC42 263780 sc-eQTL 6.76e-01 -0.0831 0.198 0.051 NK_CD56bright L2
ENSG00000116221 MRPL37 25824 sc-eQTL 9.98e-01 0.00041 0.201 0.051 NK_CD56bright L2
ENSG00000157193 LRP8 881396 sc-eQTL 4.89e-01 0.127 0.184 0.051 NK_CD56bright L2
ENSG00000157216 SSBP3 -203614 sc-eQTL 6.37e-01 0.0716 0.151 0.051 NK_CD56bright L2
ENSG00000162384 CZIB 989231 sc-eQTL 6.40e-02 0.35 0.188 0.051 NK_CD56bright L2
ENSG00000162385 MAGOH 971347 sc-eQTL 9.64e-01 0.00778 0.171 0.051 NK_CD56bright L2
ENSG00000162398 LEXM -596198 sc-eQTL 2.35e-01 -0.212 0.178 0.051 NK_CD56bright L2
ENSG00000243725 TTC4 -505996 sc-eQTL 1.92e-02 0.452 0.192 0.051 NK_CD56bright L2
ENSG00000006555 TTC22 -591458 sc-eQTL 5.54e-01 -0.117 0.197 0.053 NK_HLA L2
ENSG00000058799 YIPF1 320067 sc-eQTL 7.24e-01 -0.0714 0.202 0.053 NK_HLA L2
ENSG00000058804 NDC1 371402 sc-eQTL 6.92e-01 0.0799 0.201 0.053 NK_HLA L2
ENSG00000081870 HSPB11 263936 sc-eQTL 6.46e-01 -0.0879 0.191 0.053 NK_HLA L2
ENSG00000116133 DHCR24 -677330 sc-eQTL 4.84e-01 -0.134 0.192 0.053 NK_HLA L2
ENSG00000116205 TCEANC2 156281 sc-eQTL 4.85e-01 -0.129 0.185 0.053 NK_HLA L2
ENSG00000116209 TMEM59 156361 sc-eQTL 8.15e-01 -0.043 0.184 0.053 NK_HLA L2
ENSG00000116212 LRRC42 263780 sc-eQTL 9.15e-01 0.0212 0.199 0.053 NK_HLA L2
ENSG00000116221 MRPL37 25824 sc-eQTL 7.32e-01 -0.0696 0.203 0.053 NK_HLA L2
ENSG00000157193 LRP8 881396 sc-eQTL 8.51e-01 -0.0357 0.19 0.053 NK_HLA L2
ENSG00000157216 SSBP3 -203614 sc-eQTL 4.29e-01 0.131 0.165 0.053 NK_HLA L2
ENSG00000162384 CZIB 989231 sc-eQTL 9.77e-01 -0.00548 0.19 0.053 NK_HLA L2
ENSG00000162385 MAGOH 971347 sc-eQTL 5.31e-01 0.114 0.182 0.053 NK_HLA L2
ENSG00000162398 LEXM -596198 sc-eQTL 1.64e-01 0.259 0.186 0.053 NK_HLA L2
ENSG00000243725 TTC4 -505996 sc-eQTL 2.93e-01 0.215 0.204 0.053 NK_HLA L2
ENSG00000006555 TTC22 -591458 sc-eQTL 4.27e-01 -0.145 0.182 0.05 Pro_T L2
ENSG00000058799 YIPF1 320067 sc-eQTL 8.33e-02 -0.299 0.172 0.05 Pro_T L2
ENSG00000058804 NDC1 371402 sc-eQTL 9.71e-01 0.00494 0.137 0.05 Pro_T L2
ENSG00000081870 HSPB11 263936 sc-eQTL 7.09e-01 -0.0461 0.123 0.05 Pro_T L2
ENSG00000116133 DHCR24 -677330 sc-eQTL 3.13e-02 0.333 0.153 0.05 Pro_T L2
ENSG00000116205 TCEANC2 156281 sc-eQTL 9.49e-01 0.012 0.189 0.05 Pro_T L2
ENSG00000116209 TMEM59 156361 sc-eQTL 3.60e-01 0.12 0.131 0.05 Pro_T L2
ENSG00000116212 LRRC42 263780 sc-eQTL 4.65e-01 -0.123 0.169 0.05 Pro_T L2
ENSG00000116221 MRPL37 25824 sc-eQTL 3.10e-01 -0.131 0.128 0.05 Pro_T L2
ENSG00000157193 LRP8 881396 sc-eQTL 8.38e-01 -0.0361 0.176 0.05 Pro_T L2
ENSG00000157216 SSBP3 -203614 sc-eQTL 7.71e-01 -0.042 0.144 0.05 Pro_T L2
ENSG00000162384 CZIB 989231 sc-eQTL 7.18e-01 -0.0721 0.199 0.05 Pro_T L2
ENSG00000162385 MAGOH 971347 sc-eQTL 5.94e-02 -0.304 0.16 0.05 Pro_T L2
ENSG00000215883 CYB5RL 9829 sc-eQTL 9.33e-01 -0.0145 0.174 0.05 Pro_T L2
ENSG00000243725 TTC4 -505996 sc-eQTL 3.34e-01 -0.187 0.193 0.05 Pro_T L2
ENSG00000058799 YIPF1 320067 sc-eQTL 4.71e-01 -0.139 0.192 0.054 cDC L2
ENSG00000058804 NDC1 371402 sc-eQTL 1.00e+00 -0.000113 0.195 0.054 cDC L2
ENSG00000081870 HSPB11 263936 sc-eQTL 3.96e-01 0.175 0.205 0.054 cDC L2
ENSG00000116133 DHCR24 -677330 sc-eQTL 7.09e-01 -0.0596 0.159 0.054 cDC L2
ENSG00000116205 TCEANC2 156281 sc-eQTL 7.35e-01 -0.0637 0.188 0.054 cDC L2
ENSG00000116209 TMEM59 156361 sc-eQTL 9.03e-01 -0.0195 0.159 0.054 cDC L2
ENSG00000116212 LRRC42 263780 sc-eQTL 1.66e-02 -0.464 0.192 0.054 cDC L2
ENSG00000116221 MRPL37 25824 sc-eQTL 6.32e-01 -0.0977 0.204 0.054 cDC L2
ENSG00000157193 LRP8 881396 sc-eQTL 7.64e-01 0.0608 0.202 0.054 cDC L2
ENSG00000157216 SSBP3 -203614 sc-eQTL 9.17e-01 0.0197 0.188 0.054 cDC L2
ENSG00000162384 CZIB 989231 sc-eQTL 6.88e-02 0.336 0.184 0.054 cDC L2
ENSG00000162385 MAGOH 971347 sc-eQTL 4.23e-01 0.136 0.169 0.054 cDC L2
ENSG00000162390 ACOT11 -332392 sc-eQTL 9.28e-02 -0.293 0.174 0.054 cDC L2
ENSG00000215883 CYB5RL 9829 sc-eQTL 8.34e-01 -0.0353 0.168 0.054 cDC L2
ENSG00000230138 LINC02812 841620 sc-eQTL 5.73e-01 0.0984 0.174 0.054 cDC L2
ENSG00000243725 TTC4 -505996 sc-eQTL 6.40e-01 -0.0942 0.201 0.054 cDC L2
ENSG00000058799 YIPF1 320067 sc-eQTL 9.94e-01 0.00134 0.19 0.052 ncMono L2
ENSG00000058804 NDC1 371402 sc-eQTL 4.14e-01 0.154 0.188 0.052 ncMono L2
ENSG00000081870 HSPB11 263936 sc-eQTL 2.75e-01 -0.218 0.199 0.052 ncMono L2
ENSG00000116133 DHCR24 -677330 sc-eQTL 5.17e-01 0.0928 0.143 0.052 ncMono L2
ENSG00000116205 TCEANC2 156281 sc-eQTL 3.90e-01 -0.154 0.179 0.052 ncMono L2
ENSG00000116209 TMEM59 156361 sc-eQTL 9.40e-01 0.0109 0.143 0.052 ncMono L2
ENSG00000116212 LRRC42 263780 sc-eQTL 1.33e-01 -0.293 0.194 0.052 ncMono L2
ENSG00000116221 MRPL37 25824 sc-eQTL 1.63e-02 0.441 0.182 0.052 ncMono L2
ENSG00000157193 LRP8 881396 sc-eQTL 1.74e-01 -0.274 0.201 0.052 ncMono L2
ENSG00000157216 SSBP3 -203614 sc-eQTL 9.48e-01 0.0132 0.202 0.052 ncMono L2
ENSG00000162384 CZIB 989231 sc-eQTL 4.53e-01 0.146 0.194 0.052 ncMono L2
ENSG00000162385 MAGOH 971347 sc-eQTL 8.32e-01 -0.0359 0.169 0.052 ncMono L2
ENSG00000243725 TTC4 -505996 sc-eQTL 2.82e-01 -0.205 0.191 0.052 ncMono L2
ENSG00000058799 YIPF1 320067 sc-eQTL 6.07e-01 0.115 0.222 0.059 pDC L2
ENSG00000058804 NDC1 371402 sc-eQTL 8.25e-04 0.729 0.214 0.059 pDC L2
ENSG00000081870 HSPB11 263936 sc-eQTL 4.37e-01 -0.151 0.194 0.059 pDC L2
ENSG00000116133 DHCR24 -677330 sc-eQTL 3.70e-01 -0.161 0.179 0.059 pDC L2
ENSG00000116205 TCEANC2 156281 sc-eQTL 7.48e-01 -0.0691 0.215 0.059 pDC L2
ENSG00000116209 TMEM59 156361 sc-eQTL 2.52e-02 0.381 0.169 0.059 pDC L2
ENSG00000116212 LRRC42 263780 sc-eQTL 5.08e-01 -0.141 0.213 0.059 pDC L2
ENSG00000116221 MRPL37 25824 sc-eQTL 9.60e-01 0.0115 0.228 0.059 pDC L2
ENSG00000157193 LRP8 881396 sc-eQTL 2.87e-01 0.202 0.189 0.059 pDC L2
ENSG00000157216 SSBP3 -203614 sc-eQTL 3.36e-01 0.195 0.202 0.059 pDC L2
ENSG00000162384 CZIB 989231 sc-eQTL 7.03e-01 -0.085 0.222 0.059 pDC L2
ENSG00000162385 MAGOH 971347 sc-eQTL 4.86e-01 0.139 0.199 0.059 pDC L2
ENSG00000162390 ACOT11 -332392 sc-eQTL 6.50e-01 -0.0387 0.085 0.059 pDC L2
ENSG00000215883 CYB5RL 9829 sc-eQTL 9.93e-01 0.00161 0.196 0.059 pDC L2
ENSG00000230138 LINC02812 841620 sc-eQTL 6.36e-01 0.0726 0.153 0.059 pDC L2
ENSG00000243725 TTC4 -505996 sc-eQTL 4.00e-01 0.191 0.226 0.059 pDC L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000280378 AL353898.3 174985 eQTL 0.0153 -0.191 0.0785 0.0 0.0 0.0285

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina