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Genes within 1Mb (chr1:53804151:CCTTT:C):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000058799 YIPF1 -85647 sc-eQTL 3.18e-01 -0.202 0.202 0.052 DC L1
ENSG00000058804 NDC1 -34312 sc-eQTL 9.29e-01 -0.0166 0.186 0.052 DC L1
ENSG00000081870 HSPB11 -141778 sc-eQTL 6.77e-01 -0.0728 0.175 0.052 DC L1
ENSG00000116171 SCP2 876875 sc-eQTL 7.76e-02 -0.254 0.143 0.052 DC L1
ENSG00000116205 TCEANC2 -249433 sc-eQTL 1.50e-01 0.264 0.183 0.052 DC L1
ENSG00000116209 TMEM59 -249353 sc-eQTL 3.06e-01 0.148 0.144 0.052 DC L1
ENSG00000116212 LRRC42 -141934 sc-eQTL 1.15e-01 -0.296 0.187 0.052 DC L1
ENSG00000116221 MRPL37 -379890 sc-eQTL 6.95e-02 0.351 0.192 0.052 DC L1
ENSG00000121310 ECHDC2 876939 sc-eQTL 2.81e-01 -0.205 0.189 0.052 DC L1
ENSG00000157184 CPT2 607359 sc-eQTL 5.47e-01 -0.117 0.195 0.052 DC L1
ENSG00000157193 LRP8 475682 sc-eQTL 4.04e-01 -0.131 0.156 0.052 DC L1
ENSG00000157216 SSBP3 -609328 sc-eQTL 2.95e-01 0.181 0.173 0.052 DC L1
ENSG00000162384 CZIB 583517 sc-eQTL 8.55e-01 -0.0311 0.17 0.052 DC L1
ENSG00000162385 MAGOH 565633 sc-eQTL 3.45e-01 0.148 0.156 0.052 DC L1
ENSG00000162390 ACOT11 -738106 sc-eQTL 3.82e-01 -0.146 0.166 0.052 DC L1
ENSG00000215883 CYB5RL -395885 sc-eQTL 4.16e-01 0.148 0.181 0.052 DC L1
ENSG00000230138 LINC02812 435906 sc-eQTL 7.92e-02 0.156 0.0885 0.052 DC L1
ENSG00000243725 TTC4 -911710 sc-eQTL 9.19e-01 0.0199 0.195 0.052 DC L1
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000006555 TTC22 -997172 sc-eQTL 3.13e-01 -0.198 0.196 0.052 CD4_CTL L2
ENSG00000058799 YIPF1 -85647 sc-eQTL 2.49e-01 -0.24 0.208 0.052 CD4_CTL L2
ENSG00000058804 NDC1 -34312 sc-eQTL 9.89e-01 -0.0028 0.205 0.052 CD4_CTL L2
ENSG00000081870 HSPB11 -141778 sc-eQTL 2.41e-01 -0.251 0.213 0.052 CD4_CTL L2
ENSG00000116171 SCP2 876875 sc-eQTL 1.42e-01 -0.256 0.174 0.052 CD4_CTL L2
ENSG00000116205 TCEANC2 -249433 sc-eQTL 2.06e-02 0.466 0.2 0.052 CD4_CTL L2
ENSG00000116209 TMEM59 -249353 sc-eQTL 6.94e-01 0.0725 0.184 0.052 CD4_CTL L2
ENSG00000116212 LRRC42 -141934 sc-eQTL 7.66e-01 -0.0609 0.204 0.052 CD4_CTL L2
ENSG00000116221 MRPL37 -379890 sc-eQTL 6.27e-01 -0.11 0.226 0.052 CD4_CTL L2
ENSG00000121310 ECHDC2 876939 sc-eQTL 3.38e-01 0.21 0.218 0.052 CD4_CTL L2
ENSG00000157184 CPT2 607359 sc-eQTL 4.90e-01 0.142 0.206 0.052 CD4_CTL L2
ENSG00000157193 LRP8 475682 sc-eQTL 7.75e-01 0.0601 0.21 0.052 CD4_CTL L2
ENSG00000157216 SSBP3 -609328 sc-eQTL 1.66e-01 0.193 0.139 0.052 CD4_CTL L2
ENSG00000162384 CZIB 583517 sc-eQTL 7.73e-01 0.0637 0.22 0.052 CD4_CTL L2
ENSG00000162385 MAGOH 565633 sc-eQTL 7.79e-01 -0.0564 0.201 0.052 CD4_CTL L2
ENSG00000243725 TTC4 -911710 sc-eQTL 4.92e-01 -0.147 0.214 0.052 CD4_CTL L2
ENSG00000006555 TTC22 -997172 sc-eQTL 4.75e-01 -0.14 0.195 0.053 CD8_TCM L2
ENSG00000058799 YIPF1 -85647 sc-eQTL 8.44e-01 -0.0412 0.209 0.053 CD8_TCM L2
ENSG00000058804 NDC1 -34312 sc-eQTL 7.00e-01 -0.075 0.194 0.053 CD8_TCM L2
ENSG00000081870 HSPB11 -141778 sc-eQTL 7.06e-01 -0.0679 0.18 0.053 CD8_TCM L2
ENSG00000116171 SCP2 876875 sc-eQTL 7.77e-01 0.0509 0.179 0.053 CD8_TCM L2
ENSG00000116205 TCEANC2 -249433 sc-eQTL 8.42e-01 -0.0393 0.197 0.053 CD8_TCM L2
ENSG00000116209 TMEM59 -249353 sc-eQTL 1.83e-01 -0.231 0.172 0.053 CD8_TCM L2
ENSG00000116212 LRRC42 -141934 sc-eQTL 6.71e-01 -0.0873 0.205 0.053 CD8_TCM L2
ENSG00000116221 MRPL37 -379890 sc-eQTL 4.13e-01 0.161 0.196 0.053 CD8_TCM L2
ENSG00000121310 ECHDC2 876939 sc-eQTL 4.23e-01 0.165 0.206 0.053 CD8_TCM L2
ENSG00000157184 CPT2 607359 sc-eQTL 6.71e-01 0.0875 0.206 0.053 CD8_TCM L2
ENSG00000157193 LRP8 475682 sc-eQTL 3.75e-01 -0.162 0.182 0.053 CD8_TCM L2
ENSG00000157216 SSBP3 -609328 sc-eQTL 8.34e-02 0.294 0.169 0.053 CD8_TCM L2
ENSG00000162383 SLC1A7 661519 sc-eQTL 6.09e-01 -0.0214 0.0417 0.053 CD8_TCM L2
ENSG00000162384 CZIB 583517 sc-eQTL 7.63e-01 0.0589 0.195 0.053 CD8_TCM L2
ENSG00000162385 MAGOH 565633 sc-eQTL 2.15e-01 0.228 0.183 0.053 CD8_TCM L2
ENSG00000243725 TTC4 -911710 sc-eQTL 3.52e-01 -0.187 0.2 0.053 CD8_TCM L2
ENSG00000006555 TTC22 -997172 sc-eQTL 3.49e-01 0.205 0.218 0.051 NK_CD56bright L2
ENSG00000058799 YIPF1 -85647 sc-eQTL 2.56e-01 -0.262 0.23 0.051 NK_CD56bright L2
ENSG00000058804 NDC1 -34312 sc-eQTL 7.92e-01 -0.0571 0.216 0.051 NK_CD56bright L2
ENSG00000081870 HSPB11 -141778 sc-eQTL 7.26e-01 0.0768 0.219 0.051 NK_CD56bright L2
ENSG00000116171 SCP2 876875 sc-eQTL 7.81e-01 0.046 0.165 0.051 NK_CD56bright L2
ENSG00000116205 TCEANC2 -249433 sc-eQTL 1.35e-01 0.305 0.203 0.051 NK_CD56bright L2
ENSG00000116209 TMEM59 -249353 sc-eQTL 2.71e-01 0.219 0.199 0.051 NK_CD56bright L2
ENSG00000116212 LRRC42 -141934 sc-eQTL 5.00e-01 -0.148 0.22 0.051 NK_CD56bright L2
ENSG00000116221 MRPL37 -379890 sc-eQTL 3.09e-01 -0.227 0.222 0.051 NK_CD56bright L2
ENSG00000121310 ECHDC2 876939 sc-eQTL 9.75e-01 -0.00724 0.232 0.051 NK_CD56bright L2
ENSG00000157184 CPT2 607359 sc-eQTL 8.70e-01 -0.0352 0.215 0.051 NK_CD56bright L2
ENSG00000157193 LRP8 475682 sc-eQTL 3.77e-01 -0.18 0.203 0.051 NK_CD56bright L2
ENSG00000157216 SSBP3 -609328 sc-eQTL 8.52e-01 -0.0314 0.168 0.051 NK_CD56bright L2
ENSG00000162383 SLC1A7 661519 sc-eQTL 8.37e-01 0.0349 0.169 0.051 NK_CD56bright L2
ENSG00000162384 CZIB 583517 sc-eQTL 4.04e-01 -0.175 0.209 0.051 NK_CD56bright L2
ENSG00000162385 MAGOH 565633 sc-eQTL 2.92e-01 0.199 0.189 0.051 NK_CD56bright L2
ENSG00000174348 PODN 742099 sc-eQTL 7.70e-01 0.0444 0.152 0.051 NK_CD56bright L2
ENSG00000243725 TTC4 -911710 sc-eQTL 7.35e-01 0.0728 0.215 0.051 NK_CD56bright L2
ENSG00000006555 TTC22 -997172 sc-eQTL 5.09e-01 0.144 0.217 0.053 NK_HLA L2
ENSG00000058799 YIPF1 -85647 sc-eQTL 8.65e-01 -0.0379 0.223 0.053 NK_HLA L2
ENSG00000058804 NDC1 -34312 sc-eQTL 5.21e-01 0.143 0.222 0.053 NK_HLA L2
ENSG00000081870 HSPB11 -141778 sc-eQTL 5.12e-01 0.139 0.211 0.053 NK_HLA L2
ENSG00000116171 SCP2 876875 sc-eQTL 1.50e-01 0.25 0.173 0.053 NK_HLA L2
ENSG00000116205 TCEANC2 -249433 sc-eQTL 9.88e-01 -0.00301 0.205 0.053 NK_HLA L2
ENSG00000116209 TMEM59 -249353 sc-eQTL 8.12e-01 -0.0485 0.203 0.053 NK_HLA L2
ENSG00000116212 LRRC42 -141934 sc-eQTL 3.67e-01 -0.199 0.22 0.053 NK_HLA L2
ENSG00000116221 MRPL37 -379890 sc-eQTL 3.43e-01 -0.212 0.224 0.053 NK_HLA L2
ENSG00000121310 ECHDC2 876939 sc-eQTL 3.23e-01 0.221 0.223 0.053 NK_HLA L2
ENSG00000157184 CPT2 607359 sc-eQTL 4.31e-01 -0.163 0.207 0.053 NK_HLA L2
ENSG00000157193 LRP8 475682 sc-eQTL 7.86e-01 -0.0572 0.21 0.053 NK_HLA L2
ENSG00000157216 SSBP3 -609328 sc-eQTL 3.89e-01 0.158 0.183 0.053 NK_HLA L2
ENSG00000162383 SLC1A7 661519 sc-eQTL 9.89e-01 -0.00268 0.2 0.053 NK_HLA L2
ENSG00000162384 CZIB 583517 sc-eQTL 6.93e-01 -0.0833 0.21 0.053 NK_HLA L2
ENSG00000162385 MAGOH 565633 sc-eQTL 5.46e-01 0.122 0.201 0.053 NK_HLA L2
ENSG00000174348 PODN 742099 sc-eQTL 5.53e-01 -0.124 0.209 0.053 NK_HLA L2
ENSG00000243725 TTC4 -911710 sc-eQTL 9.04e-01 0.0274 0.226 0.053 NK_HLA L2
ENSG00000058799 YIPF1 -85647 sc-eQTL 2.56e-01 -0.219 0.192 0.054 cDC L2
ENSG00000058804 NDC1 -34312 sc-eQTL 6.67e-01 -0.0841 0.195 0.054 cDC L2
ENSG00000081870 HSPB11 -141778 sc-eQTL 8.33e-01 -0.0436 0.206 0.054 cDC L2
ENSG00000116171 SCP2 876875 sc-eQTL 4.39e-01 -0.132 0.171 0.054 cDC L2
ENSG00000116205 TCEANC2 -249433 sc-eQTL 3.36e-01 0.181 0.188 0.054 cDC L2
ENSG00000116209 TMEM59 -249353 sc-eQTL 4.68e-01 0.116 0.16 0.054 cDC L2
ENSG00000116212 LRRC42 -141934 sc-eQTL 5.73e-03 -0.535 0.192 0.054 cDC L2
ENSG00000116221 MRPL37 -379890 sc-eQTL 1.37e-01 0.304 0.203 0.054 cDC L2
ENSG00000121310 ECHDC2 876939 sc-eQTL 4.62e-01 -0.146 0.198 0.054 cDC L2
ENSG00000157184 CPT2 607359 sc-eQTL 9.97e-01 0.000805 0.199 0.054 cDC L2
ENSG00000157193 LRP8 475682 sc-eQTL 1.56e-01 -0.288 0.202 0.054 cDC L2
ENSG00000157216 SSBP3 -609328 sc-eQTL 5.09e-01 0.125 0.188 0.054 cDC L2
ENSG00000162384 CZIB 583517 sc-eQTL 8.43e-01 -0.037 0.186 0.054 cDC L2
ENSG00000162385 MAGOH 565633 sc-eQTL 8.18e-01 0.0393 0.17 0.054 cDC L2
ENSG00000162390 ACOT11 -738106 sc-eQTL 3.69e-01 -0.158 0.175 0.054 cDC L2
ENSG00000215883 CYB5RL -395885 sc-eQTL 4.77e-01 0.12 0.169 0.054 cDC L2
ENSG00000230138 LINC02812 435906 sc-eQTL 7.99e-01 0.0447 0.175 0.054 cDC L2
ENSG00000243725 TTC4 -911710 sc-eQTL 5.22e-01 -0.129 0.202 0.054 cDC L2
ENSG00000006555 TTC22 -997172 sc-eQTL 6.85e-01 -0.0763 0.188 0.061 gdT L2
ENSG00000058799 YIPF1 -85647 sc-eQTL 8.91e-01 -0.0322 0.234 0.061 gdT L2
ENSG00000058804 NDC1 -34312 sc-eQTL 3.43e-01 -0.217 0.228 0.061 gdT L2
ENSG00000081870 HSPB11 -141778 sc-eQTL 3.80e-01 0.229 0.26 0.061 gdT L2
ENSG00000116171 SCP2 876875 sc-eQTL 9.84e-01 -0.00351 0.179 0.061 gdT L2
ENSG00000116205 TCEANC2 -249433 sc-eQTL 3.11e-03 -0.613 0.204 0.061 gdT L2
ENSG00000116209 TMEM59 -249353 sc-eQTL 4.33e-01 -0.167 0.213 0.061 gdT L2
ENSG00000116212 LRRC42 -141934 sc-eQTL 6.02e-01 -0.131 0.25 0.061 gdT L2
ENSG00000116221 MRPL37 -379890 sc-eQTL 8.88e-01 -0.0344 0.244 0.061 gdT L2
ENSG00000121310 ECHDC2 876939 sc-eQTL 7.07e-01 -0.0976 0.259 0.061 gdT L2
ENSG00000157184 CPT2 607359 sc-eQTL 3.69e-01 -0.222 0.246 0.061 gdT L2
ENSG00000157193 LRP8 475682 sc-eQTL 1.10e-01 0.386 0.24 0.061 gdT L2
ENSG00000157216 SSBP3 -609328 sc-eQTL 4.02e-01 0.126 0.149 0.061 gdT L2
ENSG00000162383 SLC1A7 661519 sc-eQTL 6.11e-01 -0.0847 0.166 0.061 gdT L2
ENSG00000162384 CZIB 583517 sc-eQTL 7.60e-01 0.0705 0.231 0.061 gdT L2
ENSG00000162385 MAGOH 565633 sc-eQTL 4.32e-01 -0.185 0.235 0.061 gdT L2
ENSG00000215883 CYB5RL -395885 sc-eQTL 8.72e-01 0.0337 0.209 0.061 gdT L2
ENSG00000243725 TTC4 -911710 sc-eQTL 2.98e-01 0.245 0.235 0.061 gdT L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000058804 \N -34312 3.27e-05 2.73e-05 6.48e-06 1.17e-05 2.85e-06 1.13e-05 4.1e-05 2.53e-06 1.67e-05 7.84e-06 2.08e-05 7.38e-06 2.97e-05 7.61e-06 5.45e-06 1.02e-05 1.13e-05 1.18e-05 4.02e-06 3.29e-06 8.33e-06 1.73e-05 2.63e-05 4.74e-06 2.78e-05 5.31e-06 7.96e-06 7.64e-06 2.73e-05 1.68e-05 1.05e-05 8.22e-07 2.29e-06 7.07e-06 7.74e-06 4.43e-06 1.76e-06 2.39e-06 2.59e-06 2.23e-06 1.67e-06 4.2e-05 3.74e-06 3.33e-07 1.46e-06 2.36e-06 2.9e-06 8.09e-07 4.78e-07
ENSG00000198711 \N -432289 3.27e-07 1.83e-07 7e-08 2.57e-07 9.94e-08 1.19e-07 2.95e-07 5.53e-08 1.45e-07 4.74e-08 1.86e-07 1.01e-07 2.38e-07 8.42e-08 5.98e-08 7.5e-08 4.35e-08 1.77e-07 6.32e-08 4e-08 1.21e-07 1.31e-07 1.86e-07 3.42e-08 2.74e-07 1.26e-07 1.17e-07 9.15e-08 1.32e-07 1.06e-07 1.09e-07 3.72e-08 3.26e-08 1.19e-07 1.56e-07 3.07e-08 5.74e-08 9.25e-08 6.71e-08 3.8e-08 2.99e-08 4.16e-07 5.21e-08 1.89e-08 5.75e-08 1.65e-08 1.35e-07 4.7e-09 4.72e-08
ENSG00000243725 \N -911710 2.66e-07 1.06e-07 3.35e-08 1.76e-07 1.02e-07 9.36e-08 1.41e-07 5.24e-08 1.32e-07 3.99e-08 1.63e-07 7.49e-08 1.23e-07 6.07e-08 4.89e-08 7.76e-08 5.12e-08 1.07e-07 5.12e-08 2.85e-08 1.03e-07 1.31e-07 1.29e-07 5.19e-08 1.29e-07 1.13e-07 1.13e-07 8.49e-08 1.03e-07 1.1e-07 9.5e-08 3.29e-08 2.75e-08 8.3e-08 9.14e-08 4.26e-08 5.1e-08 8.48e-08 8.3e-08 3.87e-08 3.31e-08 1.36e-07 4.23e-08 3.06e-08 1.12e-07 1.8e-08 1.5e-07 4.96e-09 4.72e-08