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Genes within 1Mb (chr1:54219585:T:C):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000006555 TTC22 -581738 sc-eQTL 7.75e-01 0.0558 0.195 0.05 CD8_TEM L2
ENSG00000058799 YIPF1 329787 sc-eQTL 5.74e-01 -0.118 0.209 0.05 CD8_TEM L2
ENSG00000058804 NDC1 381122 sc-eQTL 6.73e-01 -0.0839 0.199 0.05 CD8_TEM L2
ENSG00000081870 HSPB11 273656 sc-eQTL 6.60e-01 -0.0829 0.188 0.05 CD8_TEM L2
ENSG00000116205 TCEANC2 166001 sc-eQTL 4.64e-01 0.149 0.203 0.05 CD8_TEM L2
ENSG00000116209 TMEM59 166081 sc-eQTL 4.20e-01 0.159 0.196 0.05 CD8_TEM L2
ENSG00000116212 LRRC42 273500 sc-eQTL 1.35e-01 0.316 0.211 0.05 CD8_TEM L2
ENSG00000116221 MRPL37 35544 sc-eQTL 2.79e-01 -0.216 0.199 0.05 CD8_TEM L2
ENSG00000157193 LRP8 891116 sc-eQTL 6.66e-01 0.0856 0.198 0.05 CD8_TEM L2
ENSG00000157216 SSBP3 -193894 sc-eQTL 8.48e-01 -0.0362 0.189 0.05 CD8_TEM L2
ENSG00000162384 CZIB 998951 sc-eQTL 1.26e-01 0.324 0.211 0.05 CD8_TEM L2
ENSG00000162385 MAGOH 981067 sc-eQTL 3.20e-01 0.178 0.179 0.05 CD8_TEM L2
ENSG00000162402 USP24 -995779 sc-eQTL 7.72e-01 0.0576 0.199 0.05 CD8_TEM L2
ENSG00000243725 TTC4 -496276 sc-eQTL 7.72e-01 -0.0585 0.202 0.05 CD8_TEM L2
ENSG00000006555 TTC22 -581738 sc-eQTL 1.62e-01 -0.274 0.195 0.05 NK_HLA L2
ENSG00000058799 YIPF1 329787 sc-eQTL 7.43e-02 -0.358 0.2 0.05 NK_HLA L2
ENSG00000058804 NDC1 381122 sc-eQTL 1.37e-01 0.298 0.199 0.05 NK_HLA L2
ENSG00000081870 HSPB11 273656 sc-eQTL 3.55e-02 -0.399 0.189 0.05 NK_HLA L2
ENSG00000116133 DHCR24 -667610 sc-eQTL 4.72e-01 -0.138 0.191 0.05 NK_HLA L2
ENSG00000116205 TCEANC2 166001 sc-eQTL 2.09e-01 -0.232 0.184 0.05 NK_HLA L2
ENSG00000116209 TMEM59 166081 sc-eQTL 9.10e-01 0.0208 0.183 0.05 NK_HLA L2
ENSG00000116212 LRRC42 273500 sc-eQTL 6.66e-01 -0.0859 0.199 0.05 NK_HLA L2
ENSG00000116221 MRPL37 35544 sc-eQTL 4.06e-01 -0.168 0.202 0.05 NK_HLA L2
ENSG00000157193 LRP8 891116 sc-eQTL 8.47e-01 -0.0365 0.189 0.05 NK_HLA L2
ENSG00000157216 SSBP3 -193894 sc-eQTL 8.39e-01 0.0335 0.165 0.05 NK_HLA L2
ENSG00000162384 CZIB 998951 sc-eQTL 1.88e-01 -0.249 0.189 0.05 NK_HLA L2
ENSG00000162385 MAGOH 981067 sc-eQTL 1.17e-01 0.284 0.18 0.05 NK_HLA L2
ENSG00000162398 LEXM -586478 sc-eQTL 4.72e-02 -0.368 0.184 0.05 NK_HLA L2
ENSG00000162402 USP24 -995779 sc-eQTL 5.18e-01 -0.0882 0.136 0.05 NK_HLA L2
ENSG00000243725 TTC4 -496276 sc-eQTL 5.81e-01 -0.112 0.204 0.05 NK_HLA L2
ENSG00000006555 TTC22 -581738 sc-eQTL 2.97e-01 -0.234 0.223 0.063 PB L2
ENSG00000058799 YIPF1 329787 sc-eQTL 3.97e-01 0.134 0.157 0.063 PB L2
ENSG00000058804 NDC1 381122 sc-eQTL 1.23e-01 -0.361 0.232 0.063 PB L2
ENSG00000081870 HSPB11 273656 sc-eQTL 4.68e-01 0.143 0.197 0.063 PB L2
ENSG00000116133 DHCR24 -667610 sc-eQTL 1.11e-01 -0.316 0.196 0.063 PB L2
ENSG00000116205 TCEANC2 166001 sc-eQTL 6.85e-01 0.0984 0.242 0.063 PB L2
ENSG00000116209 TMEM59 166081 sc-eQTL 3.86e-01 -0.0877 0.101 0.063 PB L2
ENSG00000116212 LRRC42 273500 sc-eQTL 6.58e-01 -0.101 0.228 0.063 PB L2
ENSG00000116221 MRPL37 35544 sc-eQTL 2.05e-01 -0.232 0.182 0.063 PB L2
ENSG00000157193 LRP8 891116 sc-eQTL 2.04e-02 -0.531 0.226 0.063 PB L2
ENSG00000157216 SSBP3 -193894 sc-eQTL 8.18e-01 -0.0488 0.212 0.063 PB L2
ENSG00000162384 CZIB 998951 sc-eQTL 1.86e-01 0.318 0.239 0.063 PB L2
ENSG00000162385 MAGOH 981067 sc-eQTL 3.73e-01 0.199 0.222 0.063 PB L2
ENSG00000162402 USP24 -995779 sc-eQTL 3.99e-01 -0.203 0.24 0.063 PB L2
ENSG00000215883 CYB5RL 19549 sc-eQTL 1.71e-01 0.341 0.248 0.063 PB L2
ENSG00000230138 LINC02812 851340 sc-eQTL 8.82e-02 -0.305 0.177 0.063 PB L2
ENSG00000243725 TTC4 -496276 sc-eQTL 7.95e-02 0.407 0.23 0.063 PB L2
ENSG00000006555 TTC22 -581738 sc-eQTL 9.46e-01 -0.0124 0.181 0.05 Pro_T L2
ENSG00000058799 YIPF1 329787 sc-eQTL 8.24e-01 0.038 0.171 0.05 Pro_T L2
ENSG00000058804 NDC1 381122 sc-eQTL 4.88e-01 -0.0939 0.135 0.05 Pro_T L2
ENSG00000081870 HSPB11 273656 sc-eQTL 6.02e-01 0.0635 0.122 0.05 Pro_T L2
ENSG00000116133 DHCR24 -667610 sc-eQTL 7.65e-02 -0.271 0.152 0.05 Pro_T L2
ENSG00000116205 TCEANC2 166001 sc-eQTL 2.07e-01 -0.236 0.187 0.05 Pro_T L2
ENSG00000116209 TMEM59 166081 sc-eQTL 1.29e-01 0.197 0.129 0.05 Pro_T L2
ENSG00000116212 LRRC42 273500 sc-eQTL 9.70e-01 -0.00629 0.167 0.05 Pro_T L2
ENSG00000116221 MRPL37 35544 sc-eQTL 8.64e-01 -0.0218 0.127 0.05 Pro_T L2
ENSG00000157193 LRP8 891116 sc-eQTL 7.31e-01 -0.0599 0.174 0.05 Pro_T L2
ENSG00000157216 SSBP3 -193894 sc-eQTL 1.92e-01 0.186 0.142 0.05 Pro_T L2
ENSG00000162384 CZIB 998951 sc-eQTL 9.37e-01 0.0157 0.197 0.05 Pro_T L2
ENSG00000162385 MAGOH 981067 sc-eQTL 6.96e-01 -0.0625 0.16 0.05 Pro_T L2
ENSG00000162402 USP24 -995779 sc-eQTL 3.69e-01 0.156 0.174 0.05 Pro_T L2
ENSG00000215883 CYB5RL 19549 sc-eQTL 1.63e-02 -0.41 0.169 0.05 Pro_T L2
ENSG00000243725 TTC4 -496276 sc-eQTL 6.14e-01 0.0966 0.191 0.05 Pro_T L2
ENSG00000006555 TTC22 -581738 sc-eQTL 9.57e-01 0.00972 0.181 0.052 gdT L2
ENSG00000058799 YIPF1 329787 sc-eQTL 8.30e-01 0.0484 0.225 0.052 gdT L2
ENSG00000058804 NDC1 381122 sc-eQTL 6.95e-01 0.0866 0.22 0.052 gdT L2
ENSG00000081870 HSPB11 273656 sc-eQTL 5.03e-01 0.169 0.251 0.052 gdT L2
ENSG00000116133 DHCR24 -667610 sc-eQTL 2.68e-01 0.223 0.201 0.052 gdT L2
ENSG00000116205 TCEANC2 166001 sc-eQTL 1.14e-01 -0.319 0.201 0.052 gdT L2
ENSG00000116209 TMEM59 166081 sc-eQTL 1.38e-01 0.304 0.204 0.052 gdT L2
ENSG00000116212 LRRC42 273500 sc-eQTL 7.28e-01 -0.0841 0.241 0.052 gdT L2
ENSG00000116221 MRPL37 35544 sc-eQTL 3.83e-01 0.205 0.235 0.052 gdT L2
ENSG00000157193 LRP8 891116 sc-eQTL 5.00e-02 0.455 0.23 0.052 gdT L2
ENSG00000157216 SSBP3 -193894 sc-eQTL 9.78e-02 -0.238 0.143 0.052 gdT L2
ENSG00000162384 CZIB 998951 sc-eQTL 4.02e-01 0.186 0.221 0.052 gdT L2
ENSG00000162385 MAGOH 981067 sc-eQTL 9.85e-02 0.373 0.224 0.052 gdT L2
ENSG00000162402 USP24 -995779 sc-eQTL 2.90e-01 0.205 0.193 0.052 gdT L2
ENSG00000215883 CYB5RL 19549 sc-eQTL 5.26e-01 0.128 0.201 0.052 gdT L2
ENSG00000243725 TTC4 -496276 sc-eQTL 7.96e-01 0.0588 0.227 0.052 gdT L2
ENSG00000058799 YIPF1 329787 sc-eQTL 3.29e-01 -0.188 0.192 0.051 intMono L2
ENSG00000058804 NDC1 381122 sc-eQTL 1.61e-01 -0.277 0.197 0.051 intMono L2
ENSG00000081870 HSPB11 273656 sc-eQTL 5.43e-01 -0.115 0.189 0.051 intMono L2
ENSG00000116133 DHCR24 -667610 sc-eQTL 9.25e-01 0.0137 0.144 0.051 intMono L2
ENSG00000116205 TCEANC2 166001 sc-eQTL 8.35e-01 -0.0375 0.18 0.051 intMono L2
ENSG00000116209 TMEM59 166081 sc-eQTL 1.88e-01 0.174 0.131 0.051 intMono L2
ENSG00000116212 LRRC42 273500 sc-eQTL 7.30e-01 0.0717 0.207 0.051 intMono L2
ENSG00000116221 MRPL37 35544 sc-eQTL 9.14e-02 0.34 0.2 0.051 intMono L2
ENSG00000157193 LRP8 891116 sc-eQTL 1.83e-01 -0.253 0.189 0.051 intMono L2
ENSG00000157216 SSBP3 -193894 sc-eQTL 7.33e-02 0.368 0.205 0.051 intMono L2
ENSG00000162384 CZIB 998951 sc-eQTL 8.51e-01 0.0371 0.198 0.051 intMono L2
ENSG00000162385 MAGOH 981067 sc-eQTL 1.03e-01 -0.266 0.162 0.051 intMono L2
ENSG00000162402 USP24 -995779 sc-eQTL 5.34e-02 -0.354 0.182 0.051 intMono L2
ENSG00000243725 TTC4 -496276 sc-eQTL 6.11e-01 0.0997 0.196 0.051 intMono L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000058804 NDC1 381122 eQTL 4.17e-02 -0.0863 0.0423 0.00107 0.0 0.0461
ENSG00000169174 PCSK9 -819963 pQTL 0.0373 0.138 0.0662 0.0 0.0 0.0448
ENSG00000198711 SSBP3-AS1 -16855 eQTL 5.08e-03 -0.129 0.0459 0.0 0.0 0.0461

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000162402 \N -995779 2.66e-07 1.16e-07 3.44e-08 1.79e-07 9.91e-08 9.13e-08 1.42e-07 5.21e-08 1.37e-07 4.23e-08 1.62e-07 8.02e-08 1.26e-07 6.21e-08 5.4e-08 7.87e-08 4.94e-08 1.1e-07 5.22e-08 3.74e-08 1.03e-07 1.3e-07 1.3e-07 4.99e-08 1.31e-07 1.13e-07 1.13e-07 8.45e-08 1.03e-07 1.1e-07 9.75e-08 3.59e-08 2.74e-08 8.25e-08 9.02e-08 4.12e-08 5.06e-08 8.28e-08 8.3e-08 3e-08 3.16e-08 1.36e-07 4.51e-08 1.44e-08 1.01e-07 1.75e-08 1.45e-07 4.82e-09 4.72e-08