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Genes within 1Mb (chr1:53860200:C:T):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000006555 TTC22 -941123 sc-eQTL 5.53e-01 -0.11 0.184 0.052 CD4_CTL L2
ENSG00000058799 YIPF1 -29598 sc-eQTL 9.00e-01 -0.0247 0.196 0.052 CD4_CTL L2
ENSG00000058804 NDC1 21737 sc-eQTL 6.47e-01 -0.0883 0.193 0.052 CD4_CTL L2
ENSG00000081870 HSPB11 -85729 sc-eQTL 5.93e-01 0.107 0.201 0.052 CD4_CTL L2
ENSG00000116171 SCP2 932924 sc-eQTL 7.24e-01 -0.0579 0.164 0.052 CD4_CTL L2
ENSG00000116205 TCEANC2 -193384 sc-eQTL 5.74e-01 0.107 0.19 0.052 CD4_CTL L2
ENSG00000116209 TMEM59 -193304 sc-eQTL 3.33e-01 -0.167 0.172 0.052 CD4_CTL L2
ENSG00000116212 LRRC42 -85885 sc-eQTL 5.20e-01 -0.123 0.191 0.052 CD4_CTL L2
ENSG00000116221 MRPL37 -323841 sc-eQTL 9.83e-01 0.00454 0.212 0.052 CD4_CTL L2
ENSG00000121310 ECHDC2 932988 sc-eQTL 1.96e-01 -0.265 0.204 0.052 CD4_CTL L2
ENSG00000157184 CPT2 663408 sc-eQTL 6.65e-01 -0.0839 0.193 0.052 CD4_CTL L2
ENSG00000157193 LRP8 531731 sc-eQTL 5.64e-01 -0.114 0.197 0.052 CD4_CTL L2
ENSG00000157216 SSBP3 -553279 sc-eQTL 7.90e-01 -0.0349 0.131 0.052 CD4_CTL L2
ENSG00000162384 CZIB 639566 sc-eQTL 1.08e-01 -0.331 0.205 0.052 CD4_CTL L2
ENSG00000162385 MAGOH 621682 sc-eQTL 4.27e-01 -0.15 0.188 0.052 CD4_CTL L2
ENSG00000243725 TTC4 -855661 sc-eQTL 4.03e-01 -0.168 0.2 0.052 CD4_CTL L2
ENSG00000006555 TTC22 -941123 sc-eQTL 8.10e-01 -0.0484 0.201 0.051 CD8_TCM L2
ENSG00000058799 YIPF1 -29598 sc-eQTL 1.59e-01 0.301 0.213 0.051 CD8_TCM L2
ENSG00000058804 NDC1 21737 sc-eQTL 6.29e-02 -0.37 0.198 0.051 CD8_TCM L2
ENSG00000081870 HSPB11 -85729 sc-eQTL 1.20e-02 -0.461 0.182 0.051 CD8_TCM L2
ENSG00000116171 SCP2 932924 sc-eQTL 3.48e-02 -0.387 0.182 0.051 CD8_TCM L2
ENSG00000116205 TCEANC2 -193384 sc-eQTL 7.69e-01 -0.0592 0.202 0.051 CD8_TCM L2
ENSG00000116209 TMEM59 -193304 sc-eQTL 2.68e-01 -0.197 0.177 0.051 CD8_TCM L2
ENSG00000116212 LRRC42 -85885 sc-eQTL 5.94e-01 0.112 0.21 0.051 CD8_TCM L2
ENSG00000116221 MRPL37 -323841 sc-eQTL 1.31e-01 -0.304 0.2 0.051 CD8_TCM L2
ENSG00000121310 ECHDC2 932988 sc-eQTL 7.33e-01 -0.0723 0.211 0.051 CD8_TCM L2
ENSG00000157184 CPT2 663408 sc-eQTL 3.79e-01 -0.186 0.211 0.051 CD8_TCM L2
ENSG00000157193 LRP8 531731 sc-eQTL 5.81e-01 0.103 0.187 0.051 CD8_TCM L2
ENSG00000157216 SSBP3 -553279 sc-eQTL 4.65e-02 0.347 0.173 0.051 CD8_TCM L2
ENSG00000162383 SLC1A7 717568 sc-eQTL 9.57e-01 -0.0023 0.0428 0.051 CD8_TCM L2
ENSG00000162384 CZIB 639566 sc-eQTL 7.99e-01 0.0508 0.2 0.051 CD8_TCM L2
ENSG00000162385 MAGOH 621682 sc-eQTL 3.57e-01 -0.174 0.188 0.051 CD8_TCM L2
ENSG00000243725 TTC4 -855661 sc-eQTL 4.33e-01 0.162 0.206 0.051 CD8_TCM L2
ENSG00000006555 TTC22 -941123 sc-eQTL 2.33e-01 0.229 0.192 0.053 CD8_TEM L2
ENSG00000058799 YIPF1 -29598 sc-eQTL 8.37e-01 0.0425 0.206 0.053 CD8_TEM L2
ENSG00000058804 NDC1 21737 sc-eQTL 4.89e-01 -0.136 0.196 0.053 CD8_TEM L2
ENSG00000081870 HSPB11 -85729 sc-eQTL 4.25e-01 0.148 0.186 0.053 CD8_TEM L2
ENSG00000116171 SCP2 932924 sc-eQTL 3.43e-01 0.161 0.169 0.053 CD8_TEM L2
ENSG00000116205 TCEANC2 -193384 sc-eQTL 2.25e-01 0.244 0.2 0.053 CD8_TEM L2
ENSG00000116209 TMEM59 -193304 sc-eQTL 5.83e-01 0.107 0.194 0.053 CD8_TEM L2
ENSG00000116212 LRRC42 -85885 sc-eQTL 6.76e-01 0.0875 0.209 0.053 CD8_TEM L2
ENSG00000116221 MRPL37 -323841 sc-eQTL 8.36e-01 -0.0407 0.197 0.053 CD8_TEM L2
ENSG00000121310 ECHDC2 932988 sc-eQTL 5.87e-01 0.117 0.215 0.053 CD8_TEM L2
ENSG00000157184 CPT2 663408 sc-eQTL 1.58e-01 -0.288 0.203 0.053 CD8_TEM L2
ENSG00000157193 LRP8 531731 sc-eQTL 4.04e-01 -0.163 0.195 0.053 CD8_TEM L2
ENSG00000157216 SSBP3 -553279 sc-eQTL 5.49e-02 0.356 0.184 0.053 CD8_TEM L2
ENSG00000162383 SLC1A7 717568 sc-eQTL 5.44e-01 -0.0768 0.126 0.053 CD8_TEM L2
ENSG00000162384 CZIB 639566 sc-eQTL 9.18e-01 0.0216 0.209 0.053 CD8_TEM L2
ENSG00000162385 MAGOH 621682 sc-eQTL 5.41e-02 0.339 0.175 0.053 CD8_TEM L2
ENSG00000243725 TTC4 -855661 sc-eQTL 8.15e-01 -0.0468 0.199 0.053 CD8_TEM L2
ENSG00000006555 TTC22 -941123 sc-eQTL 4.12e-02 -0.407 0.198 0.05 NK_HLA L2
ENSG00000058799 YIPF1 -29598 sc-eQTL 5.49e-01 -0.123 0.205 0.05 NK_HLA L2
ENSG00000058804 NDC1 21737 sc-eQTL 2.52e-01 -0.234 0.204 0.05 NK_HLA L2
ENSG00000081870 HSPB11 -85729 sc-eQTL 7.14e-01 0.0713 0.195 0.05 NK_HLA L2
ENSG00000116171 SCP2 932924 sc-eQTL 7.55e-01 -0.0499 0.16 0.05 NK_HLA L2
ENSG00000116205 TCEANC2 -193384 sc-eQTL 9.26e-01 0.0176 0.188 0.05 NK_HLA L2
ENSG00000116209 TMEM59 -193304 sc-eQTL 3.88e-01 -0.162 0.187 0.05 NK_HLA L2
ENSG00000116212 LRRC42 -85885 sc-eQTL 6.52e-01 0.0917 0.203 0.05 NK_HLA L2
ENSG00000116221 MRPL37 -323841 sc-eQTL 1.05e-01 -0.334 0.205 0.05 NK_HLA L2
ENSG00000121310 ECHDC2 932988 sc-eQTL 8.04e-01 0.0512 0.206 0.05 NK_HLA L2
ENSG00000157184 CPT2 663408 sc-eQTL 9.88e-01 -0.00278 0.191 0.05 NK_HLA L2
ENSG00000157193 LRP8 531731 sc-eQTL 6.05e-01 -0.1 0.193 0.05 NK_HLA L2
ENSG00000157216 SSBP3 -553279 sc-eQTL 1.63e-01 -0.235 0.167 0.05 NK_HLA L2
ENSG00000162383 SLC1A7 717568 sc-eQTL 5.16e-01 0.12 0.184 0.05 NK_HLA L2
ENSG00000162384 CZIB 639566 sc-eQTL 6.05e-01 0.1 0.193 0.05 NK_HLA L2
ENSG00000162385 MAGOH 621682 sc-eQTL 9.38e-01 0.0145 0.185 0.05 NK_HLA L2
ENSG00000162398 LEXM -945863 sc-eQTL 5.90e-01 -0.102 0.19 0.05 NK_HLA L2
ENSG00000174348 PODN 798148 sc-eQTL 9.81e-01 -0.00453 0.192 0.05 NK_HLA L2
ENSG00000243725 TTC4 -855661 sc-eQTL 4.77e-01 0.148 0.208 0.05 NK_HLA L2
ENSG00000006555 TTC22 -941123 sc-eQTL 3.42e-01 -0.223 0.234 0.056 PB L2
ENSG00000058799 YIPF1 -29598 sc-eQTL 6.71e-01 -0.0703 0.165 0.056 PB L2
ENSG00000058804 NDC1 21737 sc-eQTL 9.21e-01 0.0245 0.246 0.056 PB L2
ENSG00000081870 HSPB11 -85729 sc-eQTL 1.58e-01 0.291 0.205 0.056 PB L2
ENSG00000116171 SCP2 932924 sc-eQTL 8.56e-02 -0.306 0.177 0.056 PB L2
ENSG00000116205 TCEANC2 -193384 sc-eQTL 3.95e-01 -0.215 0.252 0.056 PB L2
ENSG00000116209 TMEM59 -193304 sc-eQTL 5.46e-01 0.064 0.106 0.056 PB L2
ENSG00000116212 LRRC42 -85885 sc-eQTL 4.84e-01 0.168 0.238 0.056 PB L2
ENSG00000116221 MRPL37 -323841 sc-eQTL 6.85e-01 -0.0782 0.192 0.056 PB L2
ENSG00000121310 ECHDC2 932988 sc-eQTL 7.74e-01 0.0768 0.266 0.056 PB L2
ENSG00000157184 CPT2 663408 sc-eQTL 5.51e-01 0.137 0.229 0.056 PB L2
ENSG00000157193 LRP8 531731 sc-eQTL 3.97e-01 -0.205 0.241 0.056 PB L2
ENSG00000157216 SSBP3 -553279 sc-eQTL 9.84e-01 0.00455 0.222 0.056 PB L2
ENSG00000162384 CZIB 639566 sc-eQTL 2.85e-01 0.27 0.251 0.056 PB L2
ENSG00000162385 MAGOH 621682 sc-eQTL 3.83e-01 -0.204 0.233 0.056 PB L2
ENSG00000215883 CYB5RL -339836 sc-eQTL 2.08e-01 -0.329 0.26 0.056 PB L2
ENSG00000230138 LINC02812 491955 sc-eQTL 2.68e-01 -0.208 0.187 0.056 PB L2
ENSG00000243725 TTC4 -855661 sc-eQTL 5.61e-01 -0.142 0.244 0.056 PB L2
ENSG00000006555 TTC22 -941123 sc-eQTL 5.95e-01 0.0991 0.186 0.05 Pro_T L2
ENSG00000058799 YIPF1 -29598 sc-eQTL 9.36e-01 -0.0142 0.176 0.05 Pro_T L2
ENSG00000058804 NDC1 21737 sc-eQTL 9.48e-01 0.00912 0.139 0.05 Pro_T L2
ENSG00000081870 HSPB11 -85729 sc-eQTL 4.31e-01 -0.0989 0.125 0.05 Pro_T L2
ENSG00000116171 SCP2 932924 sc-eQTL 5.10e-01 -0.111 0.168 0.05 Pro_T L2
ENSG00000116205 TCEANC2 -193384 sc-eQTL 2.35e-01 -0.229 0.192 0.05 Pro_T L2
ENSG00000116209 TMEM59 -193304 sc-eQTL 6.61e-01 0.0587 0.134 0.05 Pro_T L2
ENSG00000116212 LRRC42 -85885 sc-eQTL 2.66e-01 0.192 0.172 0.05 Pro_T L2
ENSG00000116221 MRPL37 -323841 sc-eQTL 9.94e-01 0.000934 0.131 0.05 Pro_T L2
ENSG00000121310 ECHDC2 932988 sc-eQTL 3.22e-01 0.183 0.184 0.05 Pro_T L2
ENSG00000157184 CPT2 663408 sc-eQTL 1.54e-01 0.258 0.18 0.05 Pro_T L2
ENSG00000157193 LRP8 531731 sc-eQTL 7.77e-02 -0.316 0.178 0.05 Pro_T L2
ENSG00000157216 SSBP3 -553279 sc-eQTL 8.61e-01 -0.0258 0.147 0.05 Pro_T L2
ENSG00000162383 SLC1A7 717568 sc-eQTL 9.55e-01 -0.00972 0.171 0.05 Pro_T L2
ENSG00000162384 CZIB 639566 sc-eQTL 7.68e-01 0.06 0.203 0.05 Pro_T L2
ENSG00000162385 MAGOH 621682 sc-eQTL 8.96e-01 0.0215 0.165 0.05 Pro_T L2
ENSG00000215883 CYB5RL -339836 sc-eQTL 9.51e-01 0.0108 0.177 0.05 Pro_T L2
ENSG00000243725 TTC4 -855661 sc-eQTL 1.63e-01 0.275 0.196 0.05 Pro_T L2
ENSG00000058799 YIPF1 -29598 sc-eQTL 6.94e-01 -0.0848 0.215 0.054 pDC L2
ENSG00000058804 NDC1 21737 sc-eQTL 2.98e-01 0.223 0.214 0.054 pDC L2
ENSG00000081870 HSPB11 -85729 sc-eQTL 5.35e-01 -0.117 0.188 0.054 pDC L2
ENSG00000116171 SCP2 932924 sc-eQTL 9.05e-01 -0.024 0.2 0.054 pDC L2
ENSG00000116205 TCEANC2 -193384 sc-eQTL 1.29e-01 0.315 0.207 0.054 pDC L2
ENSG00000116209 TMEM59 -193304 sc-eQTL 5.68e-01 0.095 0.166 0.054 pDC L2
ENSG00000116212 LRRC42 -85885 sc-eQTL 5.21e-01 0.133 0.207 0.054 pDC L2
ENSG00000116221 MRPL37 -323841 sc-eQTL 6.48e-01 0.101 0.221 0.054 pDC L2
ENSG00000121310 ECHDC2 932988 sc-eQTL 4.61e-02 -0.43 0.214 0.054 pDC L2
ENSG00000157184 CPT2 663408 sc-eQTL 9.58e-01 0.0109 0.208 0.054 pDC L2
ENSG00000157193 LRP8 531731 sc-eQTL 6.48e-02 0.339 0.182 0.054 pDC L2
ENSG00000157216 SSBP3 -553279 sc-eQTL 8.25e-01 0.0435 0.196 0.054 pDC L2
ENSG00000162384 CZIB 639566 sc-eQTL 3.18e-01 -0.215 0.215 0.054 pDC L2
ENSG00000162385 MAGOH 621682 sc-eQTL 8.13e-01 0.0459 0.193 0.054 pDC L2
ENSG00000162390 ACOT11 -682057 sc-eQTL 3.31e-01 -0.0802 0.0822 0.054 pDC L2
ENSG00000215883 CYB5RL -339836 sc-eQTL 4.82e-01 -0.134 0.19 0.054 pDC L2
ENSG00000230138 LINC02812 491955 sc-eQTL 7.91e-01 -0.0394 0.148 0.054 pDC L2
ENSG00000243725 TTC4 -855661 sc-eQTL 8.78e-01 -0.0339 0.22 0.054 pDC L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000116205 TCEANC2 -193384 eQTL 0.664 -0.0181 0.0417 0.0048 0.0 0.0432
ENSG00000121310 ECHDC2 932988 eQTL 0.0187 -0.108 0.0459 0.0 0.0 0.0432
ENSG00000162398 LEXM -945863 eQTL 0.0193 0.124 0.053 0.0 0.0 0.0432
ENSG00000215883 CYB5RL -339836 eQTL 0.175 0.0665 0.049 0.00124 0.0 0.0432

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000215883 CYB5RL -339836 1.93e-06 2.56e-06 2.16e-07 1.43e-06 3.67e-07 6.42e-07 1.21e-06 4.18e-07 1.69e-06 5.89e-07 1.83e-06 1.29e-06 2.62e-06 6.86e-07 3.84e-07 1e-06 9.71e-07 1.17e-06 5.66e-07 7.62e-07 7.61e-07 1.95e-06 1.6e-06 5.79e-07 2.51e-06 1.02e-06 1.02e-06 8.53e-07 1.75e-06 1.68e-06 7.56e-07 3.01e-07 3.58e-07 6.06e-07 6.11e-07 5.4e-07 7.59e-07 2.54e-07 4.69e-07 3.35e-07 2.91e-07 2.12e-06 3.44e-07 1.32e-07 1.67e-07 1.97e-07 2.37e-07 3.66e-08 1.08e-07