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Genes within 1Mb (chr1:54824835:T:C):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000006555 TTC22 23512 sc-eQTL 6.85e-01 -0.0636 0.157 0.056 B_Activated L2
ENSG00000058799 YIPF1 935037 sc-eQTL 7.22e-01 -0.0756 0.212 0.056 B_Activated L2
ENSG00000058804 NDC1 986372 sc-eQTL 8.56e-01 0.0362 0.2 0.056 B_Activated L2
ENSG00000081870 HSPB11 878906 sc-eQTL 9.86e-01 0.00374 0.216 0.056 B_Activated L2
ENSG00000116133 DHCR24 -62360 sc-eQTL 4.64e-01 -0.135 0.184 0.056 B_Activated L2
ENSG00000116205 TCEANC2 771251 sc-eQTL 2.09e-02 -0.453 0.195 0.056 B_Activated L2
ENSG00000116209 TMEM59 771331 sc-eQTL 6.09e-01 -0.108 0.21 0.056 B_Activated L2
ENSG00000116212 LRRC42 878750 sc-eQTL 1.17e-01 0.318 0.202 0.056 B_Activated L2
ENSG00000116221 MRPL37 640794 sc-eQTL 6.98e-02 0.41 0.225 0.056 B_Activated L2
ENSG00000157216 SSBP3 411356 sc-eQTL 3.60e-01 -0.188 0.205 0.056 B_Activated L2
ENSG00000162402 USP24 -390529 sc-eQTL 4.71e-01 -0.145 0.2 0.056 B_Activated L2
ENSG00000215883 CYB5RL 624799 sc-eQTL 2.81e-01 0.191 0.176 0.056 B_Activated L2
ENSG00000243725 TTC4 108974 sc-eQTL 2.46e-03 0.574 0.187 0.056 B_Activated L2
ENSG00000006555 TTC22 23512 sc-eQTL 7.68e-01 -0.0567 0.192 0.05 CD4_CTL L2
ENSG00000058799 YIPF1 935037 sc-eQTL 5.86e-02 -0.384 0.202 0.05 CD4_CTL L2
ENSG00000058804 NDC1 986372 sc-eQTL 4.44e-01 0.153 0.2 0.05 CD4_CTL L2
ENSG00000081870 HSPB11 878906 sc-eQTL 2.28e-02 -0.473 0.206 0.05 CD4_CTL L2
ENSG00000116205 TCEANC2 771251 sc-eQTL 6.69e-02 -0.361 0.196 0.05 CD4_CTL L2
ENSG00000116209 TMEM59 771331 sc-eQTL 7.42e-01 -0.0592 0.179 0.05 CD4_CTL L2
ENSG00000116212 LRRC42 878750 sc-eQTL 2.05e-01 0.253 0.198 0.05 CD4_CTL L2
ENSG00000116221 MRPL37 640794 sc-eQTL 8.84e-03 0.574 0.217 0.05 CD4_CTL L2
ENSG00000157216 SSBP3 411356 sc-eQTL 7.43e-01 0.0446 0.136 0.05 CD4_CTL L2
ENSG00000162402 USP24 -390529 sc-eQTL 3.51e-01 0.174 0.186 0.05 CD4_CTL L2
ENSG00000243725 TTC4 108974 sc-eQTL 6.04e-01 0.108 0.209 0.05 CD4_CTL L2
ENSG00000006555 TTC22 23512 sc-eQTL 8.93e-01 -0.0278 0.205 0.051 CD8_TCM L2
ENSG00000058799 YIPF1 935037 sc-eQTL 6.59e-01 -0.0968 0.219 0.051 CD8_TCM L2
ENSG00000058804 NDC1 986372 sc-eQTL 5.49e-01 -0.122 0.204 0.051 CD8_TCM L2
ENSG00000081870 HSPB11 878906 sc-eQTL 3.90e-01 0.163 0.189 0.051 CD8_TCM L2
ENSG00000116205 TCEANC2 771251 sc-eQTL 5.26e-01 0.131 0.206 0.051 CD8_TCM L2
ENSG00000116209 TMEM59 771331 sc-eQTL 8.07e-01 0.0444 0.182 0.051 CD8_TCM L2
ENSG00000116212 LRRC42 878750 sc-eQTL 4.38e-01 -0.167 0.215 0.051 CD8_TCM L2
ENSG00000116221 MRPL37 640794 sc-eQTL 8.55e-01 -0.0377 0.206 0.051 CD8_TCM L2
ENSG00000157216 SSBP3 411356 sc-eQTL 5.16e-01 0.116 0.179 0.051 CD8_TCM L2
ENSG00000162402 USP24 -390529 sc-eQTL 2.62e-01 -0.195 0.173 0.051 CD8_TCM L2
ENSG00000243725 TTC4 108974 sc-eQTL 7.68e-01 0.0624 0.211 0.051 CD8_TCM L2
ENSG00000006555 TTC22 23512 sc-eQTL 5.18e-03 0.547 0.193 0.053 CD8_TEM L2
ENSG00000058799 YIPF1 935037 sc-eQTL 1.07e-01 0.34 0.21 0.053 CD8_TEM L2
ENSG00000058804 NDC1 986372 sc-eQTL 5.76e-01 -0.113 0.201 0.053 CD8_TEM L2
ENSG00000081870 HSPB11 878906 sc-eQTL 7.09e-01 0.0712 0.191 0.053 CD8_TEM L2
ENSG00000116205 TCEANC2 771251 sc-eQTL 4.07e-01 0.171 0.205 0.053 CD8_TEM L2
ENSG00000116209 TMEM59 771331 sc-eQTL 6.76e-01 0.0833 0.199 0.053 CD8_TEM L2
ENSG00000116212 LRRC42 878750 sc-eQTL 4.34e-01 -0.168 0.214 0.053 CD8_TEM L2
ENSG00000116221 MRPL37 640794 sc-eQTL 5.06e-01 0.134 0.202 0.053 CD8_TEM L2
ENSG00000157216 SSBP3 411356 sc-eQTL 6.10e-01 -0.0975 0.191 0.053 CD8_TEM L2
ENSG00000162402 USP24 -390529 sc-eQTL 3.55e-01 0.186 0.201 0.053 CD8_TEM L2
ENSG00000243725 TTC4 108974 sc-eQTL 1.07e-02 0.518 0.201 0.053 CD8_TEM L2
ENSG00000006555 TTC22 23512 sc-eQTL 2.94e-01 -0.215 0.204 0.05 NK_HLA L2
ENSG00000058799 YIPF1 935037 sc-eQTL 3.61e-01 -0.192 0.21 0.05 NK_HLA L2
ENSG00000058804 NDC1 986372 sc-eQTL 2.41e-01 -0.246 0.209 0.05 NK_HLA L2
ENSG00000081870 HSPB11 878906 sc-eQTL 3.66e-01 0.18 0.199 0.05 NK_HLA L2
ENSG00000116133 DHCR24 -62360 sc-eQTL 1.81e-01 -0.267 0.199 0.05 NK_HLA L2
ENSG00000116205 TCEANC2 771251 sc-eQTL 6.36e-01 -0.0912 0.193 0.05 NK_HLA L2
ENSG00000116209 TMEM59 771331 sc-eQTL 6.75e-01 -0.0803 0.191 0.05 NK_HLA L2
ENSG00000116212 LRRC42 878750 sc-eQTL 3.57e-01 0.191 0.207 0.05 NK_HLA L2
ENSG00000116221 MRPL37 640794 sc-eQTL 8.83e-01 -0.0312 0.211 0.05 NK_HLA L2
ENSG00000157216 SSBP3 411356 sc-eQTL 5.75e-01 0.0966 0.172 0.05 NK_HLA L2
ENSG00000162398 LEXM 18772 sc-eQTL 5.63e-01 -0.112 0.194 0.05 NK_HLA L2
ENSG00000162402 USP24 -390529 sc-eQTL 2.92e-01 -0.15 0.142 0.05 NK_HLA L2
ENSG00000243725 TTC4 108974 sc-eQTL 8.91e-01 -0.0291 0.213 0.05 NK_HLA L2
ENSG00000006555 TTC22 23512 sc-eQTL 4.86e-01 -0.131 0.188 0.05 Pro_T L2
ENSG00000058799 YIPF1 935037 sc-eQTL 5.35e-01 0.111 0.178 0.05 Pro_T L2
ENSG00000058804 NDC1 986372 sc-eQTL 2.05e-01 0.179 0.141 0.05 Pro_T L2
ENSG00000081870 HSPB11 878906 sc-eQTL 1.63e-02 -0.303 0.125 0.05 Pro_T L2
ENSG00000116133 DHCR24 -62360 sc-eQTL 1.58e-01 -0.226 0.159 0.05 Pro_T L2
ENSG00000116205 TCEANC2 771251 sc-eQTL 8.58e-01 0.0349 0.195 0.05 Pro_T L2
ENSG00000116209 TMEM59 771331 sc-eQTL 9.49e-01 0.00866 0.136 0.05 Pro_T L2
ENSG00000116212 LRRC42 878750 sc-eQTL 7.17e-01 0.0632 0.174 0.05 Pro_T L2
ENSG00000116221 MRPL37 640794 sc-eQTL 6.84e-01 0.0541 0.133 0.05 Pro_T L2
ENSG00000157216 SSBP3 411356 sc-eQTL 1.79e-01 0.2 0.148 0.05 Pro_T L2
ENSG00000162402 USP24 -390529 sc-eQTL 1.82e-02 0.427 0.179 0.05 Pro_T L2
ENSG00000215883 CYB5RL 624799 sc-eQTL 2.47e-01 0.208 0.179 0.05 Pro_T L2
ENSG00000243725 TTC4 108974 sc-eQTL 1.46e-01 0.289 0.198 0.05 Pro_T L2
ENSG00000006555 TTC22 23512 sc-eQTL 7.41e-01 0.063 0.19 0.055 gdT L2
ENSG00000058799 YIPF1 935037 sc-eQTL 4.92e-01 -0.163 0.236 0.055 gdT L2
ENSG00000058804 NDC1 986372 sc-eQTL 3.73e-01 0.206 0.231 0.055 gdT L2
ENSG00000081870 HSPB11 878906 sc-eQTL 3.95e-01 0.225 0.263 0.055 gdT L2
ENSG00000116133 DHCR24 -62360 sc-eQTL 5.68e-01 0.121 0.211 0.055 gdT L2
ENSG00000116205 TCEANC2 771251 sc-eQTL 7.67e-01 -0.0632 0.213 0.055 gdT L2
ENSG00000116209 TMEM59 771331 sc-eQTL 3.83e-01 -0.188 0.215 0.055 gdT L2
ENSG00000116212 LRRC42 878750 sc-eQTL 6.88e-01 -0.102 0.253 0.055 gdT L2
ENSG00000116221 MRPL37 640794 sc-eQTL 5.56e-01 -0.146 0.247 0.055 gdT L2
ENSG00000157216 SSBP3 411356 sc-eQTL 9.53e-02 0.252 0.15 0.055 gdT L2
ENSG00000162402 USP24 -390529 sc-eQTL 6.99e-01 0.0788 0.203 0.055 gdT L2
ENSG00000215883 CYB5RL 624799 sc-eQTL 3.31e-01 0.205 0.211 0.055 gdT L2
ENSG00000243725 TTC4 108974 sc-eQTL 4.92e-01 0.164 0.238 0.055 gdT L2
ENSG00000058799 YIPF1 935037 sc-eQTL 3.44e-01 -0.21 0.221 0.051 pDC L2
ENSG00000058804 NDC1 986372 sc-eQTL 2.95e-01 0.231 0.22 0.051 pDC L2
ENSG00000081870 HSPB11 878906 sc-eQTL 6.12e-01 0.0984 0.194 0.051 pDC L2
ENSG00000116133 DHCR24 -62360 sc-eQTL 6.59e-01 0.0788 0.178 0.051 pDC L2
ENSG00000116205 TCEANC2 771251 sc-eQTL 8.34e-01 0.0449 0.214 0.051 pDC L2
ENSG00000116209 TMEM59 771331 sc-eQTL 1.53e-01 0.244 0.17 0.051 pDC L2
ENSG00000116212 LRRC42 878750 sc-eQTL 4.33e-02 0.427 0.21 0.051 pDC L2
ENSG00000116221 MRPL37 640794 sc-eQTL 6.24e-01 0.111 0.227 0.051 pDC L2
ENSG00000157216 SSBP3 411356 sc-eQTL 2.72e-01 -0.221 0.201 0.051 pDC L2
ENSG00000162390 ACOT11 282578 sc-eQTL 2.80e-01 0.0914 0.0844 0.051 pDC L2
ENSG00000162402 USP24 -390529 sc-eQTL 9.66e-01 -0.00609 0.143 0.051 pDC L2
ENSG00000215883 CYB5RL 624799 sc-eQTL 4.43e-01 0.15 0.195 0.051 pDC L2
ENSG00000243725 TTC4 108974 sc-eQTL 1.64e-01 0.314 0.224 0.051 pDC L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000219102 HNRNPA3P12 848804 eQTL 0.0169 0.219 0.0913 0.0 0.0 0.0456

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina