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Genes within 1Mb (chr1:54222856:A:G):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000006555 TTC22 -578467 sc-eQTL 7.75e-01 0.0558 0.195 0.05 CD8_TEM L2
ENSG00000058799 YIPF1 333058 sc-eQTL 5.74e-01 -0.118 0.209 0.05 CD8_TEM L2
ENSG00000058804 NDC1 384393 sc-eQTL 6.73e-01 -0.0839 0.199 0.05 CD8_TEM L2
ENSG00000081870 HSPB11 276927 sc-eQTL 6.60e-01 -0.0829 0.188 0.05 CD8_TEM L2
ENSG00000116205 TCEANC2 169272 sc-eQTL 4.64e-01 0.149 0.203 0.05 CD8_TEM L2
ENSG00000116209 TMEM59 169352 sc-eQTL 4.20e-01 0.159 0.196 0.05 CD8_TEM L2
ENSG00000116212 LRRC42 276771 sc-eQTL 1.35e-01 0.316 0.211 0.05 CD8_TEM L2
ENSG00000116221 MRPL37 38815 sc-eQTL 2.79e-01 -0.216 0.199 0.05 CD8_TEM L2
ENSG00000157193 LRP8 894387 sc-eQTL 6.66e-01 0.0856 0.198 0.05 CD8_TEM L2
ENSG00000157216 SSBP3 -190623 sc-eQTL 8.48e-01 -0.0362 0.189 0.05 CD8_TEM L2
ENSG00000162385 MAGOH 984338 sc-eQTL 3.20e-01 0.178 0.179 0.05 CD8_TEM L2
ENSG00000162402 USP24 -992508 sc-eQTL 7.72e-01 0.0576 0.199 0.05 CD8_TEM L2
ENSG00000243725 TTC4 -493005 sc-eQTL 7.72e-01 -0.0585 0.202 0.05 CD8_TEM L2
ENSG00000006555 TTC22 -578467 sc-eQTL 1.62e-01 -0.274 0.195 0.05 NK_HLA L2
ENSG00000058799 YIPF1 333058 sc-eQTL 7.43e-02 -0.358 0.2 0.05 NK_HLA L2
ENSG00000058804 NDC1 384393 sc-eQTL 1.37e-01 0.298 0.199 0.05 NK_HLA L2
ENSG00000081870 HSPB11 276927 sc-eQTL 3.55e-02 -0.399 0.189 0.05 NK_HLA L2
ENSG00000116133 DHCR24 -664339 sc-eQTL 4.72e-01 -0.138 0.191 0.05 NK_HLA L2
ENSG00000116205 TCEANC2 169272 sc-eQTL 2.09e-01 -0.232 0.184 0.05 NK_HLA L2
ENSG00000116209 TMEM59 169352 sc-eQTL 9.10e-01 0.0208 0.183 0.05 NK_HLA L2
ENSG00000116212 LRRC42 276771 sc-eQTL 6.66e-01 -0.0859 0.199 0.05 NK_HLA L2
ENSG00000116221 MRPL37 38815 sc-eQTL 4.06e-01 -0.168 0.202 0.05 NK_HLA L2
ENSG00000157193 LRP8 894387 sc-eQTL 8.47e-01 -0.0365 0.189 0.05 NK_HLA L2
ENSG00000157216 SSBP3 -190623 sc-eQTL 8.39e-01 0.0335 0.165 0.05 NK_HLA L2
ENSG00000162385 MAGOH 984338 sc-eQTL 1.17e-01 0.284 0.18 0.05 NK_HLA L2
ENSG00000162398 LEXM -583207 sc-eQTL 4.72e-02 -0.368 0.184 0.05 NK_HLA L2
ENSG00000162402 USP24 -992508 sc-eQTL 5.18e-01 -0.0882 0.136 0.05 NK_HLA L2
ENSG00000243725 TTC4 -493005 sc-eQTL 5.81e-01 -0.112 0.204 0.05 NK_HLA L2
ENSG00000006555 TTC22 -578467 sc-eQTL 2.97e-01 -0.234 0.223 0.063 PB L2
ENSG00000058799 YIPF1 333058 sc-eQTL 3.97e-01 0.134 0.157 0.063 PB L2
ENSG00000058804 NDC1 384393 sc-eQTL 1.23e-01 -0.361 0.232 0.063 PB L2
ENSG00000081870 HSPB11 276927 sc-eQTL 4.68e-01 0.143 0.197 0.063 PB L2
ENSG00000116133 DHCR24 -664339 sc-eQTL 1.11e-01 -0.316 0.196 0.063 PB L2
ENSG00000116205 TCEANC2 169272 sc-eQTL 6.85e-01 0.0984 0.242 0.063 PB L2
ENSG00000116209 TMEM59 169352 sc-eQTL 3.86e-01 -0.0877 0.101 0.063 PB L2
ENSG00000116212 LRRC42 276771 sc-eQTL 6.58e-01 -0.101 0.228 0.063 PB L2
ENSG00000116221 MRPL37 38815 sc-eQTL 2.05e-01 -0.232 0.182 0.063 PB L2
ENSG00000157193 LRP8 894387 sc-eQTL 2.04e-02 -0.531 0.226 0.063 PB L2
ENSG00000157216 SSBP3 -190623 sc-eQTL 8.18e-01 -0.0488 0.212 0.063 PB L2
ENSG00000162385 MAGOH 984338 sc-eQTL 3.73e-01 0.199 0.222 0.063 PB L2
ENSG00000162402 USP24 -992508 sc-eQTL 3.99e-01 -0.203 0.24 0.063 PB L2
ENSG00000215883 CYB5RL 22820 sc-eQTL 1.71e-01 0.341 0.248 0.063 PB L2
ENSG00000230138 LINC02812 854611 sc-eQTL 8.82e-02 -0.305 0.177 0.063 PB L2
ENSG00000243725 TTC4 -493005 sc-eQTL 7.95e-02 0.407 0.23 0.063 PB L2
ENSG00000006555 TTC22 -578467 sc-eQTL 9.46e-01 -0.0124 0.181 0.05 Pro_T L2
ENSG00000058799 YIPF1 333058 sc-eQTL 8.24e-01 0.038 0.171 0.05 Pro_T L2
ENSG00000058804 NDC1 384393 sc-eQTL 4.88e-01 -0.0939 0.135 0.05 Pro_T L2
ENSG00000081870 HSPB11 276927 sc-eQTL 6.02e-01 0.0635 0.122 0.05 Pro_T L2
ENSG00000116133 DHCR24 -664339 sc-eQTL 7.65e-02 -0.271 0.152 0.05 Pro_T L2
ENSG00000116205 TCEANC2 169272 sc-eQTL 2.07e-01 -0.236 0.187 0.05 Pro_T L2
ENSG00000116209 TMEM59 169352 sc-eQTL 1.29e-01 0.197 0.129 0.05 Pro_T L2
ENSG00000116212 LRRC42 276771 sc-eQTL 9.70e-01 -0.00629 0.167 0.05 Pro_T L2
ENSG00000116221 MRPL37 38815 sc-eQTL 8.64e-01 -0.0218 0.127 0.05 Pro_T L2
ENSG00000157193 LRP8 894387 sc-eQTL 7.31e-01 -0.0599 0.174 0.05 Pro_T L2
ENSG00000157216 SSBP3 -190623 sc-eQTL 1.92e-01 0.186 0.142 0.05 Pro_T L2
ENSG00000162385 MAGOH 984338 sc-eQTL 6.96e-01 -0.0625 0.16 0.05 Pro_T L2
ENSG00000162402 USP24 -992508 sc-eQTL 3.69e-01 0.156 0.174 0.05 Pro_T L2
ENSG00000215883 CYB5RL 22820 sc-eQTL 1.63e-02 -0.41 0.169 0.05 Pro_T L2
ENSG00000243725 TTC4 -493005 sc-eQTL 6.14e-01 0.0966 0.191 0.05 Pro_T L2
ENSG00000006555 TTC22 -578467 sc-eQTL 9.57e-01 0.00972 0.181 0.052 gdT L2
ENSG00000058799 YIPF1 333058 sc-eQTL 8.30e-01 0.0484 0.225 0.052 gdT L2
ENSG00000058804 NDC1 384393 sc-eQTL 6.95e-01 0.0866 0.22 0.052 gdT L2
ENSG00000081870 HSPB11 276927 sc-eQTL 5.03e-01 0.169 0.251 0.052 gdT L2
ENSG00000116133 DHCR24 -664339 sc-eQTL 2.68e-01 0.223 0.201 0.052 gdT L2
ENSG00000116205 TCEANC2 169272 sc-eQTL 1.14e-01 -0.319 0.201 0.052 gdT L2
ENSG00000116209 TMEM59 169352 sc-eQTL 1.38e-01 0.304 0.204 0.052 gdT L2
ENSG00000116212 LRRC42 276771 sc-eQTL 7.28e-01 -0.0841 0.241 0.052 gdT L2
ENSG00000116221 MRPL37 38815 sc-eQTL 3.83e-01 0.205 0.235 0.052 gdT L2
ENSG00000157193 LRP8 894387 sc-eQTL 5.00e-02 0.455 0.23 0.052 gdT L2
ENSG00000157216 SSBP3 -190623 sc-eQTL 9.78e-02 -0.238 0.143 0.052 gdT L2
ENSG00000162385 MAGOH 984338 sc-eQTL 9.85e-02 0.373 0.224 0.052 gdT L2
ENSG00000162402 USP24 -992508 sc-eQTL 2.90e-01 0.205 0.193 0.052 gdT L2
ENSG00000215883 CYB5RL 22820 sc-eQTL 5.26e-01 0.128 0.201 0.052 gdT L2
ENSG00000243725 TTC4 -493005 sc-eQTL 7.96e-01 0.0588 0.227 0.052 gdT L2
ENSG00000058799 YIPF1 333058 sc-eQTL 3.29e-01 -0.188 0.192 0.051 intMono L2
ENSG00000058804 NDC1 384393 sc-eQTL 1.61e-01 -0.277 0.197 0.051 intMono L2
ENSG00000081870 HSPB11 276927 sc-eQTL 5.43e-01 -0.115 0.189 0.051 intMono L2
ENSG00000116133 DHCR24 -664339 sc-eQTL 9.25e-01 0.0137 0.144 0.051 intMono L2
ENSG00000116205 TCEANC2 169272 sc-eQTL 8.35e-01 -0.0375 0.18 0.051 intMono L2
ENSG00000116209 TMEM59 169352 sc-eQTL 1.88e-01 0.174 0.131 0.051 intMono L2
ENSG00000116212 LRRC42 276771 sc-eQTL 7.30e-01 0.0717 0.207 0.051 intMono L2
ENSG00000116221 MRPL37 38815 sc-eQTL 9.14e-02 0.34 0.2 0.051 intMono L2
ENSG00000157193 LRP8 894387 sc-eQTL 1.83e-01 -0.253 0.189 0.051 intMono L2
ENSG00000157216 SSBP3 -190623 sc-eQTL 7.33e-02 0.368 0.205 0.051 intMono L2
ENSG00000162385 MAGOH 984338 sc-eQTL 1.03e-01 -0.266 0.162 0.051 intMono L2
ENSG00000162402 USP24 -992508 sc-eQTL 5.34e-02 -0.354 0.182 0.051 intMono L2
ENSG00000243725 TTC4 -493005 sc-eQTL 6.11e-01 0.0997 0.196 0.051 intMono L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000058804 NDC1 384393 eQTL 2.64e-02 -0.0928 0.0417 0.00136 0.0 0.0466
ENSG00000198711 SSBP3-AS1 -13584 eQTL 4.02e-03 -0.13 0.0452 0.0 0.0 0.0466

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000162402 \N -992508 2.74e-07 1.3e-07 3.72e-08 1.83e-07 9.24e-08 9.48e-08 1.53e-07 5.4e-08 1.45e-07 4.94e-08 1.54e-07 8.68e-08 1.52e-07 6.56e-08 6.12e-08 7.37e-08 3.87e-08 1.21e-07 5.75e-08 4.3e-08 1.21e-07 1.24e-07 1.44e-07 3.03e-08 1.37e-07 1.14e-07 1.07e-07 9.65e-08 1.05e-07 1.07e-07 9.7e-08 3.66e-08 3.73e-08 8.34e-08 6.34e-08 3.04e-08 5.7e-08 8.61e-08 6.55e-08 3.6e-08 3.95e-08 1.33e-07 4.33e-08 1.19e-08 4.25e-08 1.83e-08 1.19e-07 1.88e-09 4.88e-08