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Genes within 1Mb (chr1:54221866:G:GTGT):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000006555 TTC22 -579457 sc-eQTL 7.75e-01 0.0558 0.195 0.05 CD8_TEM L2
ENSG00000058799 YIPF1 332068 sc-eQTL 5.74e-01 -0.118 0.209 0.05 CD8_TEM L2
ENSG00000058804 NDC1 383403 sc-eQTL 6.73e-01 -0.0839 0.199 0.05 CD8_TEM L2
ENSG00000081870 HSPB11 275937 sc-eQTL 6.60e-01 -0.0829 0.188 0.05 CD8_TEM L2
ENSG00000116205 TCEANC2 168282 sc-eQTL 4.64e-01 0.149 0.203 0.05 CD8_TEM L2
ENSG00000116209 TMEM59 168362 sc-eQTL 4.20e-01 0.159 0.196 0.05 CD8_TEM L2
ENSG00000116212 LRRC42 275781 sc-eQTL 1.35e-01 0.316 0.211 0.05 CD8_TEM L2
ENSG00000116221 MRPL37 37825 sc-eQTL 2.79e-01 -0.216 0.199 0.05 CD8_TEM L2
ENSG00000157193 LRP8 893397 sc-eQTL 6.66e-01 0.0856 0.198 0.05 CD8_TEM L2
ENSG00000157216 SSBP3 -191613 sc-eQTL 8.48e-01 -0.0362 0.189 0.05 CD8_TEM L2
ENSG00000162385 MAGOH 983348 sc-eQTL 3.20e-01 0.178 0.179 0.05 CD8_TEM L2
ENSG00000162402 USP24 -993498 sc-eQTL 7.72e-01 0.0576 0.199 0.05 CD8_TEM L2
ENSG00000243725 TTC4 -493995 sc-eQTL 7.72e-01 -0.0585 0.202 0.05 CD8_TEM L2
ENSG00000006555 TTC22 -579457 sc-eQTL 1.62e-01 -0.274 0.195 0.05 NK_HLA L2
ENSG00000058799 YIPF1 332068 sc-eQTL 7.43e-02 -0.358 0.2 0.05 NK_HLA L2
ENSG00000058804 NDC1 383403 sc-eQTL 1.37e-01 0.298 0.199 0.05 NK_HLA L2
ENSG00000081870 HSPB11 275937 sc-eQTL 3.55e-02 -0.399 0.189 0.05 NK_HLA L2
ENSG00000116133 DHCR24 -665329 sc-eQTL 4.72e-01 -0.138 0.191 0.05 NK_HLA L2
ENSG00000116205 TCEANC2 168282 sc-eQTL 2.09e-01 -0.232 0.184 0.05 NK_HLA L2
ENSG00000116209 TMEM59 168362 sc-eQTL 9.10e-01 0.0208 0.183 0.05 NK_HLA L2
ENSG00000116212 LRRC42 275781 sc-eQTL 6.66e-01 -0.0859 0.199 0.05 NK_HLA L2
ENSG00000116221 MRPL37 37825 sc-eQTL 4.06e-01 -0.168 0.202 0.05 NK_HLA L2
ENSG00000157193 LRP8 893397 sc-eQTL 8.47e-01 -0.0365 0.189 0.05 NK_HLA L2
ENSG00000157216 SSBP3 -191613 sc-eQTL 8.39e-01 0.0335 0.165 0.05 NK_HLA L2
ENSG00000162385 MAGOH 983348 sc-eQTL 1.17e-01 0.284 0.18 0.05 NK_HLA L2
ENSG00000162398 LEXM -584197 sc-eQTL 4.72e-02 -0.368 0.184 0.05 NK_HLA L2
ENSG00000162402 USP24 -993498 sc-eQTL 5.18e-01 -0.0882 0.136 0.05 NK_HLA L2
ENSG00000243725 TTC4 -493995 sc-eQTL 5.81e-01 -0.112 0.204 0.05 NK_HLA L2
ENSG00000006555 TTC22 -579457 sc-eQTL 2.97e-01 -0.234 0.223 0.063 PB L2
ENSG00000058799 YIPF1 332068 sc-eQTL 3.97e-01 0.134 0.157 0.063 PB L2
ENSG00000058804 NDC1 383403 sc-eQTL 1.23e-01 -0.361 0.232 0.063 PB L2
ENSG00000081870 HSPB11 275937 sc-eQTL 4.68e-01 0.143 0.197 0.063 PB L2
ENSG00000116133 DHCR24 -665329 sc-eQTL 1.11e-01 -0.316 0.196 0.063 PB L2
ENSG00000116205 TCEANC2 168282 sc-eQTL 6.85e-01 0.0984 0.242 0.063 PB L2
ENSG00000116209 TMEM59 168362 sc-eQTL 3.86e-01 -0.0877 0.101 0.063 PB L2
ENSG00000116212 LRRC42 275781 sc-eQTL 6.58e-01 -0.101 0.228 0.063 PB L2
ENSG00000116221 MRPL37 37825 sc-eQTL 2.05e-01 -0.232 0.182 0.063 PB L2
ENSG00000157193 LRP8 893397 sc-eQTL 2.04e-02 -0.531 0.226 0.063 PB L2
ENSG00000157216 SSBP3 -191613 sc-eQTL 8.18e-01 -0.0488 0.212 0.063 PB L2
ENSG00000162385 MAGOH 983348 sc-eQTL 3.73e-01 0.199 0.222 0.063 PB L2
ENSG00000162402 USP24 -993498 sc-eQTL 3.99e-01 -0.203 0.24 0.063 PB L2
ENSG00000215883 CYB5RL 21830 sc-eQTL 1.71e-01 0.341 0.248 0.063 PB L2
ENSG00000230138 LINC02812 853621 sc-eQTL 8.82e-02 -0.305 0.177 0.063 PB L2
ENSG00000243725 TTC4 -493995 sc-eQTL 7.95e-02 0.407 0.23 0.063 PB L2
ENSG00000006555 TTC22 -579457 sc-eQTL 9.46e-01 -0.0124 0.181 0.05 Pro_T L2
ENSG00000058799 YIPF1 332068 sc-eQTL 8.24e-01 0.038 0.171 0.05 Pro_T L2
ENSG00000058804 NDC1 383403 sc-eQTL 4.88e-01 -0.0939 0.135 0.05 Pro_T L2
ENSG00000081870 HSPB11 275937 sc-eQTL 6.02e-01 0.0635 0.122 0.05 Pro_T L2
ENSG00000116133 DHCR24 -665329 sc-eQTL 7.65e-02 -0.271 0.152 0.05 Pro_T L2
ENSG00000116205 TCEANC2 168282 sc-eQTL 2.07e-01 -0.236 0.187 0.05 Pro_T L2
ENSG00000116209 TMEM59 168362 sc-eQTL 1.29e-01 0.197 0.129 0.05 Pro_T L2
ENSG00000116212 LRRC42 275781 sc-eQTL 9.70e-01 -0.00629 0.167 0.05 Pro_T L2
ENSG00000116221 MRPL37 37825 sc-eQTL 8.64e-01 -0.0218 0.127 0.05 Pro_T L2
ENSG00000157193 LRP8 893397 sc-eQTL 7.31e-01 -0.0599 0.174 0.05 Pro_T L2
ENSG00000157216 SSBP3 -191613 sc-eQTL 1.92e-01 0.186 0.142 0.05 Pro_T L2
ENSG00000162385 MAGOH 983348 sc-eQTL 6.96e-01 -0.0625 0.16 0.05 Pro_T L2
ENSG00000162402 USP24 -993498 sc-eQTL 3.69e-01 0.156 0.174 0.05 Pro_T L2
ENSG00000215883 CYB5RL 21830 sc-eQTL 1.63e-02 -0.41 0.169 0.05 Pro_T L2
ENSG00000243725 TTC4 -493995 sc-eQTL 6.14e-01 0.0966 0.191 0.05 Pro_T L2
ENSG00000006555 TTC22 -579457 sc-eQTL 9.57e-01 0.00972 0.181 0.052 gdT L2
ENSG00000058799 YIPF1 332068 sc-eQTL 8.30e-01 0.0484 0.225 0.052 gdT L2
ENSG00000058804 NDC1 383403 sc-eQTL 6.95e-01 0.0866 0.22 0.052 gdT L2
ENSG00000081870 HSPB11 275937 sc-eQTL 5.03e-01 0.169 0.251 0.052 gdT L2
ENSG00000116133 DHCR24 -665329 sc-eQTL 2.68e-01 0.223 0.201 0.052 gdT L2
ENSG00000116205 TCEANC2 168282 sc-eQTL 1.14e-01 -0.319 0.201 0.052 gdT L2
ENSG00000116209 TMEM59 168362 sc-eQTL 1.38e-01 0.304 0.204 0.052 gdT L2
ENSG00000116212 LRRC42 275781 sc-eQTL 7.28e-01 -0.0841 0.241 0.052 gdT L2
ENSG00000116221 MRPL37 37825 sc-eQTL 3.83e-01 0.205 0.235 0.052 gdT L2
ENSG00000157193 LRP8 893397 sc-eQTL 5.00e-02 0.455 0.23 0.052 gdT L2
ENSG00000157216 SSBP3 -191613 sc-eQTL 9.78e-02 -0.238 0.143 0.052 gdT L2
ENSG00000162385 MAGOH 983348 sc-eQTL 9.85e-02 0.373 0.224 0.052 gdT L2
ENSG00000162402 USP24 -993498 sc-eQTL 2.90e-01 0.205 0.193 0.052 gdT L2
ENSG00000215883 CYB5RL 21830 sc-eQTL 5.26e-01 0.128 0.201 0.052 gdT L2
ENSG00000243725 TTC4 -493995 sc-eQTL 7.96e-01 0.0588 0.227 0.052 gdT L2
ENSG00000058799 YIPF1 332068 sc-eQTL 3.29e-01 -0.188 0.192 0.051 intMono L2
ENSG00000058804 NDC1 383403 sc-eQTL 1.61e-01 -0.277 0.197 0.051 intMono L2
ENSG00000081870 HSPB11 275937 sc-eQTL 5.43e-01 -0.115 0.189 0.051 intMono L2
ENSG00000116133 DHCR24 -665329 sc-eQTL 9.25e-01 0.0137 0.144 0.051 intMono L2
ENSG00000116205 TCEANC2 168282 sc-eQTL 8.35e-01 -0.0375 0.18 0.051 intMono L2
ENSG00000116209 TMEM59 168362 sc-eQTL 1.88e-01 0.174 0.131 0.051 intMono L2
ENSG00000116212 LRRC42 275781 sc-eQTL 7.30e-01 0.0717 0.207 0.051 intMono L2
ENSG00000116221 MRPL37 37825 sc-eQTL 9.14e-02 0.34 0.2 0.051 intMono L2
ENSG00000157193 LRP8 893397 sc-eQTL 1.83e-01 -0.253 0.189 0.051 intMono L2
ENSG00000157216 SSBP3 -191613 sc-eQTL 7.33e-02 0.368 0.205 0.051 intMono L2
ENSG00000162385 MAGOH 983348 sc-eQTL 1.03e-01 -0.266 0.162 0.051 intMono L2
ENSG00000162402 USP24 -993498 sc-eQTL 5.34e-02 -0.354 0.182 0.051 intMono L2
ENSG00000243725 TTC4 -493995 sc-eQTL 6.11e-01 0.0997 0.196 0.051 intMono L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000058804 NDC1 383403 eQTL 4.02e-02 -0.0864 0.042 0.00109 0.0 0.0461
ENSG00000169174 PCSK9 -817682 pQTL 0.0372 0.137 0.0658 0.0 0.0 0.0448
ENSG00000198711 SSBP3-AS1 -14574 eQTL 4.88e-03 -0.129 0.0456 0.0 0.0 0.0461

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000162402 \N -993498 6.33e-07 5.74e-07 5.49e-08 2.24e-07 9.24e-08 8.45e-08 2.95e-07 5.33e-08 1.54e-07 6.08e-08 8.08e-07 8.59e-08 3.95e-07 8.42e-08 6.17e-08 7.36e-08 4.63e-08 2.15e-07 6.75e-08 4.42e-08 1.18e-07 1.42e-07 1.62e-07 3.79e-08 1.72e-07 1.21e-07 1.07e-07 1.01e-07 1.31e-07 1.38e-07 1.27e-07 3.59e-08 2.74e-08 9.3e-08 6.67e-08 3.99e-08 4.75e-08 8.78e-08 6.59e-08 3e-08 3.46e-08 1.08e-06 4.1e-08 4.9e-08 8.03e-08 1.72e-08 1.37e-07 4.96e-09 4.61e-08