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Genes within 1Mb (chr1:54617877:C:G):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000006555 TTC22 -183446 sc-eQTL 1.04e-01 0.285 0.174 0.052 CD4_CTL L2
ENSG00000058799 YIPF1 728079 sc-eQTL 5.41e-01 -0.114 0.186 0.052 CD4_CTL L2
ENSG00000058804 NDC1 779414 sc-eQTL 8.28e-01 0.04 0.183 0.052 CD4_CTL L2
ENSG00000081870 HSPB11 671948 sc-eQTL 9.30e-01 -0.0168 0.191 0.052 CD4_CTL L2
ENSG00000116205 TCEANC2 564293 sc-eQTL 8.76e-01 0.0282 0.181 0.052 CD4_CTL L2
ENSG00000116209 TMEM59 564373 sc-eQTL 6.84e-01 0.0668 0.164 0.052 CD4_CTL L2
ENSG00000116212 LRRC42 671792 sc-eQTL 1.17e-02 -0.457 0.179 0.052 CD4_CTL L2
ENSG00000116221 MRPL37 433836 sc-eQTL 1.86e-01 -0.267 0.201 0.052 CD4_CTL L2
ENSG00000157216 SSBP3 204398 sc-eQTL 3.02e-01 0.128 0.124 0.052 CD4_CTL L2
ENSG00000162402 USP24 -597487 sc-eQTL 2.69e-01 -0.188 0.17 0.052 CD4_CTL L2
ENSG00000243725 TTC4 -97984 sc-eQTL 3.82e-01 -0.167 0.191 0.052 CD4_CTL L2
ENSG00000006555 TTC22 -183446 sc-eQTL 1.98e-01 0.249 0.192 0.053 CD8_TCM L2
ENSG00000058799 YIPF1 728079 sc-eQTL 3.04e-01 -0.212 0.206 0.053 CD8_TCM L2
ENSG00000058804 NDC1 779414 sc-eQTL 7.59e-01 0.0591 0.192 0.053 CD8_TCM L2
ENSG00000081870 HSPB11 671948 sc-eQTL 8.78e-01 0.0273 0.178 0.053 CD8_TCM L2
ENSG00000116205 TCEANC2 564293 sc-eQTL 1.63e-01 -0.271 0.193 0.053 CD8_TCM L2
ENSG00000116209 TMEM59 564373 sc-eQTL 8.27e-01 0.0375 0.171 0.053 CD8_TCM L2
ENSG00000116212 LRRC42 671792 sc-eQTL 3.59e-01 0.186 0.202 0.053 CD8_TCM L2
ENSG00000116221 MRPL37 433836 sc-eQTL 6.09e-03 -0.528 0.19 0.053 CD8_TCM L2
ENSG00000157216 SSBP3 204398 sc-eQTL 7.84e-01 0.0461 0.168 0.053 CD8_TCM L2
ENSG00000162402 USP24 -597487 sc-eQTL 8.41e-01 -0.0328 0.163 0.053 CD8_TCM L2
ENSG00000243725 TTC4 -97984 sc-eQTL 7.93e-01 0.0522 0.198 0.053 CD8_TCM L2
ENSG00000006555 TTC22 -183446 sc-eQTL 9.28e-01 -0.0167 0.184 0.053 CD8_TEM L2
ENSG00000058799 YIPF1 728079 sc-eQTL 6.73e-01 -0.0833 0.197 0.053 CD8_TEM L2
ENSG00000058804 NDC1 779414 sc-eQTL 7.40e-02 0.334 0.186 0.053 CD8_TEM L2
ENSG00000081870 HSPB11 671948 sc-eQTL 6.55e-01 0.0795 0.177 0.053 CD8_TEM L2
ENSG00000116205 TCEANC2 564293 sc-eQTL 8.65e-01 -0.0327 0.192 0.053 CD8_TEM L2
ENSG00000116209 TMEM59 564373 sc-eQTL 7.70e-01 0.0542 0.185 0.053 CD8_TEM L2
ENSG00000116212 LRRC42 671792 sc-eQTL 6.84e-02 -0.363 0.198 0.053 CD8_TEM L2
ENSG00000116221 MRPL37 433836 sc-eQTL 4.45e-01 -0.144 0.188 0.053 CD8_TEM L2
ENSG00000157216 SSBP3 204398 sc-eQTL 2.90e-02 0.386 0.176 0.053 CD8_TEM L2
ENSG00000162402 USP24 -597487 sc-eQTL 4.73e-01 -0.135 0.187 0.053 CD8_TEM L2
ENSG00000243725 TTC4 -97984 sc-eQTL 7.08e-01 0.0713 0.19 0.053 CD8_TEM L2
ENSG00000006555 TTC22 -183446 sc-eQTL 6.33e-01 -0.0897 0.187 0.051 NK_CD56bright L2
ENSG00000058799 YIPF1 728079 sc-eQTL 5.64e-01 -0.114 0.197 0.051 NK_CD56bright L2
ENSG00000058804 NDC1 779414 sc-eQTL 2.15e-01 0.23 0.185 0.051 NK_CD56bright L2
ENSG00000081870 HSPB11 671948 sc-eQTL 2.40e-01 -0.221 0.187 0.051 NK_CD56bright L2
ENSG00000116133 DHCR24 -269318 sc-eQTL 5.71e-01 -0.094 0.166 0.051 NK_CD56bright L2
ENSG00000116205 TCEANC2 564293 sc-eQTL 8.67e-01 0.0294 0.175 0.051 NK_CD56bright L2
ENSG00000116209 TMEM59 564373 sc-eQTL 5.39e-01 -0.105 0.171 0.051 NK_CD56bright L2
ENSG00000116212 LRRC42 671792 sc-eQTL 1.43e-01 0.276 0.187 0.051 NK_CD56bright L2
ENSG00000116221 MRPL37 433836 sc-eQTL 5.93e-01 -0.102 0.191 0.051 NK_CD56bright L2
ENSG00000157216 SSBP3 204398 sc-eQTL 6.27e-01 0.0699 0.144 0.051 NK_CD56bright L2
ENSG00000162398 LEXM -188186 sc-eQTL 5.27e-01 0.108 0.17 0.051 NK_CD56bright L2
ENSG00000162402 USP24 -597487 sc-eQTL 4.31e-01 -0.115 0.146 0.051 NK_CD56bright L2
ENSG00000243725 TTC4 -97984 sc-eQTL 1.52e-01 -0.264 0.183 0.051 NK_CD56bright L2
ENSG00000006555 TTC22 -183446 sc-eQTL 1.57e-01 -0.246 0.173 0.05 Pro_T L2
ENSG00000058799 YIPF1 728079 sc-eQTL 4.04e-01 0.138 0.164 0.05 Pro_T L2
ENSG00000058804 NDC1 779414 sc-eQTL 3.30e-01 0.127 0.13 0.05 Pro_T L2
ENSG00000081870 HSPB11 671948 sc-eQTL 3.29e-01 -0.115 0.117 0.05 Pro_T L2
ENSG00000116133 DHCR24 -269318 sc-eQTL 4.87e-01 0.103 0.148 0.05 Pro_T L2
ENSG00000116205 TCEANC2 564293 sc-eQTL 6.04e-01 -0.0936 0.18 0.05 Pro_T L2
ENSG00000116209 TMEM59 564373 sc-eQTL 3.82e-01 -0.109 0.125 0.05 Pro_T L2
ENSG00000116212 LRRC42 671792 sc-eQTL 6.04e-01 0.0836 0.161 0.05 Pro_T L2
ENSG00000116221 MRPL37 433836 sc-eQTL 8.50e-01 0.0232 0.123 0.05 Pro_T L2
ENSG00000157216 SSBP3 204398 sc-eQTL 7.11e-01 -0.051 0.137 0.05 Pro_T L2
ENSG00000162402 USP24 -597487 sc-eQTL 2.78e-01 0.182 0.167 0.05 Pro_T L2
ENSG00000215883 CYB5RL 417841 sc-eQTL 2.68e-01 0.183 0.165 0.05 Pro_T L2
ENSG00000243725 TTC4 -97984 sc-eQTL 7.18e-02 -0.331 0.183 0.05 Pro_T L2
ENSG00000058799 YIPF1 728079 sc-eQTL 1.37e-01 0.274 0.183 0.051 cDC L2
ENSG00000058804 NDC1 779414 sc-eQTL 3.36e-01 -0.18 0.187 0.051 cDC L2
ENSG00000081870 HSPB11 671948 sc-eQTL 1.24e-01 0.303 0.196 0.051 cDC L2
ENSG00000116133 DHCR24 -269318 sc-eQTL 4.48e-01 -0.116 0.153 0.051 cDC L2
ENSG00000116205 TCEANC2 564293 sc-eQTL 9.39e-02 -0.301 0.179 0.051 cDC L2
ENSG00000116209 TMEM59 564373 sc-eQTL 3.74e-01 0.136 0.153 0.051 cDC L2
ENSG00000116212 LRRC42 671792 sc-eQTL 6.22e-01 0.0924 0.187 0.051 cDC L2
ENSG00000116221 MRPL37 433836 sc-eQTL 4.04e-01 0.164 0.196 0.051 cDC L2
ENSG00000157216 SSBP3 204398 sc-eQTL 2.46e-01 0.21 0.18 0.051 cDC L2
ENSG00000162390 ACOT11 75620 sc-eQTL 1.10e-01 0.268 0.167 0.051 cDC L2
ENSG00000162402 USP24 -597487 sc-eQTL 6.80e-01 -0.0779 0.188 0.051 cDC L2
ENSG00000215883 CYB5RL 417841 sc-eQTL 8.41e-01 -0.0326 0.162 0.051 cDC L2
ENSG00000243725 TTC4 -97984 sc-eQTL 7.61e-01 0.0587 0.193 0.051 cDC L2
ENSG00000006555 TTC22 -183446 sc-eQTL 5.99e-01 -0.0859 0.163 0.061 gdT L2
ENSG00000058799 YIPF1 728079 sc-eQTL 5.36e-01 -0.126 0.203 0.061 gdT L2
ENSG00000058804 NDC1 779414 sc-eQTL 7.63e-01 0.06 0.199 0.061 gdT L2
ENSG00000081870 HSPB11 671948 sc-eQTL 1.79e-01 -0.304 0.225 0.061 gdT L2
ENSG00000116133 DHCR24 -269318 sc-eQTL 9.17e-01 0.019 0.182 0.061 gdT L2
ENSG00000116205 TCEANC2 564293 sc-eQTL 6.04e-01 -0.0949 0.182 0.061 gdT L2
ENSG00000116209 TMEM59 564373 sc-eQTL 3.39e-01 0.177 0.185 0.061 gdT L2
ENSG00000116212 LRRC42 671792 sc-eQTL 9.70e-01 0.00829 0.217 0.061 gdT L2
ENSG00000116221 MRPL37 433836 sc-eQTL 6.50e-01 -0.0966 0.212 0.061 gdT L2
ENSG00000157216 SSBP3 204398 sc-eQTL 5.88e-01 0.0705 0.13 0.061 gdT L2
ENSG00000162402 USP24 -597487 sc-eQTL 8.81e-01 -0.0262 0.175 0.061 gdT L2
ENSG00000215883 CYB5RL 417841 sc-eQTL 3.62e-01 0.166 0.181 0.061 gdT L2
ENSG00000243725 TTC4 -97984 sc-eQTL 6.76e-01 0.0857 0.204 0.061 gdT L2
ENSG00000058799 YIPF1 728079 sc-eQTL 6.75e-01 0.0759 0.181 0.052 ncMono L2
ENSG00000058804 NDC1 779414 sc-eQTL 8.41e-01 -0.0358 0.178 0.052 ncMono L2
ENSG00000081870 HSPB11 671948 sc-eQTL 7.98e-01 -0.0486 0.19 0.052 ncMono L2
ENSG00000116133 DHCR24 -269318 sc-eQTL 4.60e-01 0.1 0.136 0.052 ncMono L2
ENSG00000116205 TCEANC2 564293 sc-eQTL 4.28e-01 -0.135 0.17 0.052 ncMono L2
ENSG00000116209 TMEM59 564373 sc-eQTL 7.68e-01 0.0402 0.136 0.052 ncMono L2
ENSG00000116212 LRRC42 671792 sc-eQTL 6.23e-02 -0.345 0.184 0.052 ncMono L2
ENSG00000116221 MRPL37 433836 sc-eQTL 6.11e-01 0.0893 0.175 0.052 ncMono L2
ENSG00000157216 SSBP3 204398 sc-eQTL 9.63e-01 0.00889 0.192 0.052 ncMono L2
ENSG00000162402 USP24 -597487 sc-eQTL 7.80e-01 -0.0429 0.153 0.052 ncMono L2
ENSG00000243725 TTC4 -97984 sc-eQTL 2.35e-01 -0.215 0.181 0.052 ncMono L2
ENSG00000058799 YIPF1 728079 sc-eQTL 5.28e-01 0.139 0.219 0.051 pDC L2
ENSG00000058804 NDC1 779414 sc-eQTL 6.40e-01 0.102 0.219 0.051 pDC L2
ENSG00000081870 HSPB11 671948 sc-eQTL 2.38e-01 0.227 0.191 0.051 pDC L2
ENSG00000116133 DHCR24 -269318 sc-eQTL 1.97e-01 0.228 0.176 0.051 pDC L2
ENSG00000116205 TCEANC2 564293 sc-eQTL 2.82e-01 0.228 0.211 0.051 pDC L2
ENSG00000116209 TMEM59 564373 sc-eQTL 3.14e-01 0.17 0.169 0.051 pDC L2
ENSG00000116212 LRRC42 671792 sc-eQTL 3.96e-01 0.179 0.21 0.051 pDC L2
ENSG00000116221 MRPL37 433836 sc-eQTL 4.28e-01 -0.179 0.225 0.051 pDC L2
ENSG00000157216 SSBP3 204398 sc-eQTL 4.36e-02 -0.401 0.197 0.051 pDC L2
ENSG00000162390 ACOT11 75620 sc-eQTL 1.34e-01 0.125 0.0834 0.051 pDC L2
ENSG00000162402 USP24 -597487 sc-eQTL 9.75e-01 0.00452 0.142 0.051 pDC L2
ENSG00000215883 CYB5RL 417841 sc-eQTL 9.78e-01 0.00545 0.194 0.051 pDC L2
ENSG00000243725 TTC4 -97984 sc-eQTL 8.42e-01 -0.0447 0.224 0.051 pDC L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000116209 TMEM59 564373 eQTL 0.0243 -0.0522 0.0231 0.00146 0.0 0.0353
ENSG00000162398 LEXM -188186 eQTL 0.0733 0.0974 0.0544 0.00137 0.0 0.0353

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000157216 \N 204398 1.97e-06 2.35e-06 2.62e-07 1.37e-06 4.56e-07 7.28e-07 1.3e-06 4.94e-07 1.7e-06 7.32e-07 1.84e-06 1.45e-06 2.84e-06 8.5e-07 4.4e-07 1.22e-06 9.22e-07 1.42e-06 5.66e-07 7.6e-07 6.36e-07 2.02e-06 1.78e-06 9.82e-07 2.59e-06 1.17e-06 1.1e-06 1.12e-06 1.69e-06 1.62e-06 8.36e-07 2.46e-07 4e-07 9.63e-07 9.05e-07 6.6e-07 7.5e-07 3.45e-07 6.4e-07 1.88e-07 3.05e-07 2.66e-06 4.23e-07 1.74e-07 3.87e-07 2.93e-07 4.62e-07 2.42e-07 2.79e-07