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Genes within 1Mb (chr1:54616836:C:T):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000006555 TTC22 -184487 sc-eQTL 1.04e-01 0.285 0.174 0.052 CD4_CTL L2
ENSG00000058799 YIPF1 727038 sc-eQTL 5.41e-01 -0.114 0.186 0.052 CD4_CTL L2
ENSG00000058804 NDC1 778373 sc-eQTL 8.28e-01 0.04 0.183 0.052 CD4_CTL L2
ENSG00000081870 HSPB11 670907 sc-eQTL 9.30e-01 -0.0168 0.191 0.052 CD4_CTL L2
ENSG00000116205 TCEANC2 563252 sc-eQTL 8.76e-01 0.0282 0.181 0.052 CD4_CTL L2
ENSG00000116209 TMEM59 563332 sc-eQTL 6.84e-01 0.0668 0.164 0.052 CD4_CTL L2
ENSG00000116212 LRRC42 670751 sc-eQTL 1.17e-02 -0.457 0.179 0.052 CD4_CTL L2
ENSG00000116221 MRPL37 432795 sc-eQTL 1.86e-01 -0.267 0.201 0.052 CD4_CTL L2
ENSG00000157216 SSBP3 203357 sc-eQTL 3.02e-01 0.128 0.124 0.052 CD4_CTL L2
ENSG00000162402 USP24 -598528 sc-eQTL 2.69e-01 -0.188 0.17 0.052 CD4_CTL L2
ENSG00000243725 TTC4 -99025 sc-eQTL 3.82e-01 -0.167 0.191 0.052 CD4_CTL L2
ENSG00000006555 TTC22 -184487 sc-eQTL 1.98e-01 0.249 0.192 0.053 CD8_TCM L2
ENSG00000058799 YIPF1 727038 sc-eQTL 3.04e-01 -0.212 0.206 0.053 CD8_TCM L2
ENSG00000058804 NDC1 778373 sc-eQTL 7.59e-01 0.0591 0.192 0.053 CD8_TCM L2
ENSG00000081870 HSPB11 670907 sc-eQTL 8.78e-01 0.0273 0.178 0.053 CD8_TCM L2
ENSG00000116205 TCEANC2 563252 sc-eQTL 1.63e-01 -0.271 0.193 0.053 CD8_TCM L2
ENSG00000116209 TMEM59 563332 sc-eQTL 8.27e-01 0.0375 0.171 0.053 CD8_TCM L2
ENSG00000116212 LRRC42 670751 sc-eQTL 3.59e-01 0.186 0.202 0.053 CD8_TCM L2
ENSG00000116221 MRPL37 432795 sc-eQTL 6.09e-03 -0.528 0.19 0.053 CD8_TCM L2
ENSG00000157216 SSBP3 203357 sc-eQTL 7.84e-01 0.0461 0.168 0.053 CD8_TCM L2
ENSG00000162402 USP24 -598528 sc-eQTL 8.41e-01 -0.0328 0.163 0.053 CD8_TCM L2
ENSG00000243725 TTC4 -99025 sc-eQTL 7.93e-01 0.0522 0.198 0.053 CD8_TCM L2
ENSG00000006555 TTC22 -184487 sc-eQTL 9.28e-01 -0.0167 0.184 0.053 CD8_TEM L2
ENSG00000058799 YIPF1 727038 sc-eQTL 6.73e-01 -0.0833 0.197 0.053 CD8_TEM L2
ENSG00000058804 NDC1 778373 sc-eQTL 7.40e-02 0.334 0.186 0.053 CD8_TEM L2
ENSG00000081870 HSPB11 670907 sc-eQTL 6.55e-01 0.0795 0.177 0.053 CD8_TEM L2
ENSG00000116205 TCEANC2 563252 sc-eQTL 8.65e-01 -0.0327 0.192 0.053 CD8_TEM L2
ENSG00000116209 TMEM59 563332 sc-eQTL 7.70e-01 0.0542 0.185 0.053 CD8_TEM L2
ENSG00000116212 LRRC42 670751 sc-eQTL 6.84e-02 -0.363 0.198 0.053 CD8_TEM L2
ENSG00000116221 MRPL37 432795 sc-eQTL 4.45e-01 -0.144 0.188 0.053 CD8_TEM L2
ENSG00000157216 SSBP3 203357 sc-eQTL 2.90e-02 0.386 0.176 0.053 CD8_TEM L2
ENSG00000162402 USP24 -598528 sc-eQTL 4.73e-01 -0.135 0.187 0.053 CD8_TEM L2
ENSG00000243725 TTC4 -99025 sc-eQTL 7.08e-01 0.0713 0.19 0.053 CD8_TEM L2
ENSG00000006555 TTC22 -184487 sc-eQTL 6.33e-01 -0.0897 0.187 0.051 NK_CD56bright L2
ENSG00000058799 YIPF1 727038 sc-eQTL 5.64e-01 -0.114 0.197 0.051 NK_CD56bright L2
ENSG00000058804 NDC1 778373 sc-eQTL 2.15e-01 0.23 0.185 0.051 NK_CD56bright L2
ENSG00000081870 HSPB11 670907 sc-eQTL 2.40e-01 -0.221 0.187 0.051 NK_CD56bright L2
ENSG00000116133 DHCR24 -270359 sc-eQTL 5.71e-01 -0.094 0.166 0.051 NK_CD56bright L2
ENSG00000116205 TCEANC2 563252 sc-eQTL 8.67e-01 0.0294 0.175 0.051 NK_CD56bright L2
ENSG00000116209 TMEM59 563332 sc-eQTL 5.39e-01 -0.105 0.171 0.051 NK_CD56bright L2
ENSG00000116212 LRRC42 670751 sc-eQTL 1.43e-01 0.276 0.187 0.051 NK_CD56bright L2
ENSG00000116221 MRPL37 432795 sc-eQTL 5.93e-01 -0.102 0.191 0.051 NK_CD56bright L2
ENSG00000157216 SSBP3 203357 sc-eQTL 6.27e-01 0.0699 0.144 0.051 NK_CD56bright L2
ENSG00000162398 LEXM -189227 sc-eQTL 5.27e-01 0.108 0.17 0.051 NK_CD56bright L2
ENSG00000162402 USP24 -598528 sc-eQTL 4.31e-01 -0.115 0.146 0.051 NK_CD56bright L2
ENSG00000243725 TTC4 -99025 sc-eQTL 1.52e-01 -0.264 0.183 0.051 NK_CD56bright L2
ENSG00000006555 TTC22 -184487 sc-eQTL 1.57e-01 -0.246 0.173 0.05 Pro_T L2
ENSG00000058799 YIPF1 727038 sc-eQTL 4.04e-01 0.138 0.164 0.05 Pro_T L2
ENSG00000058804 NDC1 778373 sc-eQTL 3.30e-01 0.127 0.13 0.05 Pro_T L2
ENSG00000081870 HSPB11 670907 sc-eQTL 3.29e-01 -0.115 0.117 0.05 Pro_T L2
ENSG00000116133 DHCR24 -270359 sc-eQTL 4.87e-01 0.103 0.148 0.05 Pro_T L2
ENSG00000116205 TCEANC2 563252 sc-eQTL 6.04e-01 -0.0936 0.18 0.05 Pro_T L2
ENSG00000116209 TMEM59 563332 sc-eQTL 3.82e-01 -0.109 0.125 0.05 Pro_T L2
ENSG00000116212 LRRC42 670751 sc-eQTL 6.04e-01 0.0836 0.161 0.05 Pro_T L2
ENSG00000116221 MRPL37 432795 sc-eQTL 8.50e-01 0.0232 0.123 0.05 Pro_T L2
ENSG00000157216 SSBP3 203357 sc-eQTL 7.11e-01 -0.051 0.137 0.05 Pro_T L2
ENSG00000162402 USP24 -598528 sc-eQTL 2.78e-01 0.182 0.167 0.05 Pro_T L2
ENSG00000215883 CYB5RL 416800 sc-eQTL 2.68e-01 0.183 0.165 0.05 Pro_T L2
ENSG00000243725 TTC4 -99025 sc-eQTL 7.18e-02 -0.331 0.183 0.05 Pro_T L2
ENSG00000058799 YIPF1 727038 sc-eQTL 1.37e-01 0.274 0.183 0.051 cDC L2
ENSG00000058804 NDC1 778373 sc-eQTL 3.36e-01 -0.18 0.187 0.051 cDC L2
ENSG00000081870 HSPB11 670907 sc-eQTL 1.24e-01 0.303 0.196 0.051 cDC L2
ENSG00000116133 DHCR24 -270359 sc-eQTL 4.48e-01 -0.116 0.153 0.051 cDC L2
ENSG00000116205 TCEANC2 563252 sc-eQTL 9.39e-02 -0.301 0.179 0.051 cDC L2
ENSG00000116209 TMEM59 563332 sc-eQTL 3.74e-01 0.136 0.153 0.051 cDC L2
ENSG00000116212 LRRC42 670751 sc-eQTL 6.22e-01 0.0924 0.187 0.051 cDC L2
ENSG00000116221 MRPL37 432795 sc-eQTL 4.04e-01 0.164 0.196 0.051 cDC L2
ENSG00000157216 SSBP3 203357 sc-eQTL 2.46e-01 0.21 0.18 0.051 cDC L2
ENSG00000162390 ACOT11 74579 sc-eQTL 1.10e-01 0.268 0.167 0.051 cDC L2
ENSG00000162402 USP24 -598528 sc-eQTL 6.80e-01 -0.0779 0.188 0.051 cDC L2
ENSG00000215883 CYB5RL 416800 sc-eQTL 8.41e-01 -0.0326 0.162 0.051 cDC L2
ENSG00000243725 TTC4 -99025 sc-eQTL 7.61e-01 0.0587 0.193 0.051 cDC L2
ENSG00000006555 TTC22 -184487 sc-eQTL 5.99e-01 -0.0859 0.163 0.061 gdT L2
ENSG00000058799 YIPF1 727038 sc-eQTL 5.36e-01 -0.126 0.203 0.061 gdT L2
ENSG00000058804 NDC1 778373 sc-eQTL 7.63e-01 0.06 0.199 0.061 gdT L2
ENSG00000081870 HSPB11 670907 sc-eQTL 1.79e-01 -0.304 0.225 0.061 gdT L2
ENSG00000116133 DHCR24 -270359 sc-eQTL 9.17e-01 0.019 0.182 0.061 gdT L2
ENSG00000116205 TCEANC2 563252 sc-eQTL 6.04e-01 -0.0949 0.182 0.061 gdT L2
ENSG00000116209 TMEM59 563332 sc-eQTL 3.39e-01 0.177 0.185 0.061 gdT L2
ENSG00000116212 LRRC42 670751 sc-eQTL 9.70e-01 0.00829 0.217 0.061 gdT L2
ENSG00000116221 MRPL37 432795 sc-eQTL 6.50e-01 -0.0966 0.212 0.061 gdT L2
ENSG00000157216 SSBP3 203357 sc-eQTL 5.88e-01 0.0705 0.13 0.061 gdT L2
ENSG00000162402 USP24 -598528 sc-eQTL 8.81e-01 -0.0262 0.175 0.061 gdT L2
ENSG00000215883 CYB5RL 416800 sc-eQTL 3.62e-01 0.166 0.181 0.061 gdT L2
ENSG00000243725 TTC4 -99025 sc-eQTL 6.76e-01 0.0857 0.204 0.061 gdT L2
ENSG00000058799 YIPF1 727038 sc-eQTL 6.75e-01 0.0759 0.181 0.052 ncMono L2
ENSG00000058804 NDC1 778373 sc-eQTL 8.41e-01 -0.0358 0.178 0.052 ncMono L2
ENSG00000081870 HSPB11 670907 sc-eQTL 7.98e-01 -0.0486 0.19 0.052 ncMono L2
ENSG00000116133 DHCR24 -270359 sc-eQTL 4.60e-01 0.1 0.136 0.052 ncMono L2
ENSG00000116205 TCEANC2 563252 sc-eQTL 4.28e-01 -0.135 0.17 0.052 ncMono L2
ENSG00000116209 TMEM59 563332 sc-eQTL 7.68e-01 0.0402 0.136 0.052 ncMono L2
ENSG00000116212 LRRC42 670751 sc-eQTL 6.23e-02 -0.345 0.184 0.052 ncMono L2
ENSG00000116221 MRPL37 432795 sc-eQTL 6.11e-01 0.0893 0.175 0.052 ncMono L2
ENSG00000157216 SSBP3 203357 sc-eQTL 9.63e-01 0.00889 0.192 0.052 ncMono L2
ENSG00000162402 USP24 -598528 sc-eQTL 7.80e-01 -0.0429 0.153 0.052 ncMono L2
ENSG00000243725 TTC4 -99025 sc-eQTL 2.35e-01 -0.215 0.181 0.052 ncMono L2
ENSG00000058799 YIPF1 727038 sc-eQTL 5.28e-01 0.139 0.219 0.051 pDC L2
ENSG00000058804 NDC1 778373 sc-eQTL 6.40e-01 0.102 0.219 0.051 pDC L2
ENSG00000081870 HSPB11 670907 sc-eQTL 2.38e-01 0.227 0.191 0.051 pDC L2
ENSG00000116133 DHCR24 -270359 sc-eQTL 1.97e-01 0.228 0.176 0.051 pDC L2
ENSG00000116205 TCEANC2 563252 sc-eQTL 2.82e-01 0.228 0.211 0.051 pDC L2
ENSG00000116209 TMEM59 563332 sc-eQTL 3.14e-01 0.17 0.169 0.051 pDC L2
ENSG00000116212 LRRC42 670751 sc-eQTL 3.96e-01 0.179 0.21 0.051 pDC L2
ENSG00000116221 MRPL37 432795 sc-eQTL 4.28e-01 -0.179 0.225 0.051 pDC L2
ENSG00000157216 SSBP3 203357 sc-eQTL 4.36e-02 -0.401 0.197 0.051 pDC L2
ENSG00000162390 ACOT11 74579 sc-eQTL 1.34e-01 0.125 0.0834 0.051 pDC L2
ENSG00000162402 USP24 -598528 sc-eQTL 9.75e-01 0.00452 0.142 0.051 pDC L2
ENSG00000215883 CYB5RL 416800 sc-eQTL 9.78e-01 0.00545 0.194 0.051 pDC L2
ENSG00000243725 TTC4 -99025 sc-eQTL 8.42e-01 -0.0447 0.224 0.051 pDC L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000116209 TMEM59 563332 eQTL 0.018 -0.055 0.0232 0.00171 0.0 0.0348
ENSG00000162398 LEXM -189227 eQTL 0.0743 0.0974 0.0545 0.00143 0.0 0.0348
ENSG00000280378 AL353898.3 581956 eQTL 0.0329 -0.157 0.0736 0.0 0.0 0.0348

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000157216 \N 203357 1.88e-06 1.92e-06 2.54e-07 1.22e-06 4.83e-07 6.63e-07 1.21e-06 4.21e-07 1.74e-06 7.15e-07 1.89e-06 1.27e-06 2.74e-06 4.99e-07 3.28e-07 1.06e-06 1.11e-06 1.35e-06 5.54e-07 5.9e-07 6.48e-07 1.96e-06 1.63e-06 8.41e-07 2.32e-06 9.68e-07 1.04e-06 1.1e-06 1.66e-06 1.39e-06 7.56e-07 2.65e-07 3.78e-07 8.37e-07 8.27e-07 6.2e-07 6.72e-07 3.5e-07 5.34e-07 2.14e-07 3.04e-07 2.22e-06 3.52e-07 1.41e-07 3.52e-07 3.28e-07 4.27e-07 2.24e-07 3e-07