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Genes within 1Mb (chr1:53542359:G:A):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000058799 YIPF1 -347439 sc-eQTL 8.87e-01 -0.029 0.204 0.051 CD8_TCM L2
ENSG00000058804 NDC1 -296104 sc-eQTL 9.30e-01 0.0167 0.19 0.051 CD8_TCM L2
ENSG00000081870 HSPB11 -403570 sc-eQTL 4.46e-02 0.352 0.174 0.051 CD8_TCM L2
ENSG00000116157 GPX7 939988 sc-eQTL 5.50e-02 -0.389 0.201 0.051 CD8_TCM L2
ENSG00000116171 SCP2 615083 sc-eQTL 7.45e-01 0.057 0.175 0.051 CD8_TCM L2
ENSG00000116205 TCEANC2 -511225 sc-eQTL 9.97e-01 -0.000739 0.192 0.051 CD8_TCM L2
ENSG00000116209 TMEM59 -511145 sc-eQTL 6.41e-01 0.0788 0.169 0.051 CD8_TCM L2
ENSG00000116212 LRRC42 -403726 sc-eQTL 6.79e-01 0.0829 0.2 0.051 CD8_TCM L2
ENSG00000116221 MRPL37 -641682 sc-eQTL 8.77e-01 -0.0298 0.192 0.051 CD8_TCM L2
ENSG00000121310 ECHDC2 615147 sc-eQTL 8.57e-01 0.0362 0.201 0.051 CD8_TCM L2
ENSG00000134744 TUT4 988872 sc-eQTL 2.53e-01 0.214 0.186 0.051 CD8_TCM L2
ENSG00000157184 CPT2 345567 sc-eQTL 1.52e-01 0.287 0.2 0.051 CD8_TCM L2
ENSG00000157193 LRP8 213890 sc-eQTL 3.85e-02 -0.366 0.176 0.051 CD8_TCM L2
ENSG00000157216 SSBP3 -871120 sc-eQTL 3.06e-01 -0.17 0.166 0.051 CD8_TCM L2
ENSG00000162378 ZYG11B 815906 sc-eQTL 6.47e-01 0.0857 0.187 0.051 CD8_TCM L2
ENSG00000162383 SLC1A7 399727 sc-eQTL 7.68e-01 0.012 0.0407 0.051 CD8_TCM L2
ENSG00000162384 CZIB 321725 sc-eQTL 9.89e-01 0.00258 0.19 0.051 CD8_TCM L2
ENSG00000162385 MAGOH 303841 sc-eQTL 1.08e-01 0.288 0.178 0.051 CD8_TCM L2
ENSG00000182183 SHISAL2A 909191 sc-eQTL 8.86e-01 0.0265 0.184 0.051 CD8_TCM L2
ENSG00000058799 YIPF1 -347439 sc-eQTL 6.39e-01 0.076 0.162 0.05 Pro_T L2
ENSG00000058804 NDC1 -296104 sc-eQTL 3.45e-01 -0.121 0.128 0.05 Pro_T L2
ENSG00000081870 HSPB11 -403570 sc-eQTL 1.11e-03 0.372 0.112 0.05 Pro_T L2
ENSG00000116157 GPX7 939988 sc-eQTL 6.45e-01 0.07 0.152 0.05 Pro_T L2
ENSG00000116171 SCP2 615083 sc-eQTL 8.99e-01 0.0197 0.155 0.05 Pro_T L2
ENSG00000116205 TCEANC2 -511225 sc-eQTL 9.73e-01 -0.0059 0.177 0.05 Pro_T L2
ENSG00000116209 TMEM59 -511145 sc-eQTL 1.98e-01 0.158 0.123 0.05 Pro_T L2
ENSG00000116212 LRRC42 -403726 sc-eQTL 9.63e-01 -0.00727 0.158 0.05 Pro_T L2
ENSG00000116221 MRPL37 -641682 sc-eQTL 5.18e-01 -0.078 0.12 0.05 Pro_T L2
ENSG00000121310 ECHDC2 615147 sc-eQTL 1.63e-01 0.236 0.169 0.05 Pro_T L2
ENSG00000134744 TUT4 988872 sc-eQTL 6.13e-01 0.0995 0.197 0.05 Pro_T L2
ENSG00000157184 CPT2 345567 sc-eQTL 8.97e-01 -0.0215 0.166 0.05 Pro_T L2
ENSG00000157193 LRP8 213890 sc-eQTL 5.56e-01 0.0973 0.165 0.05 Pro_T L2
ENSG00000157216 SSBP3 -871120 sc-eQTL 6.78e-01 -0.0561 0.135 0.05 Pro_T L2
ENSG00000162377 COA7 844012 sc-eQTL 7.08e-01 0.0592 0.158 0.05 Pro_T L2
ENSG00000162378 ZYG11B 815906 sc-eQTL 3.65e-01 -0.175 0.193 0.05 Pro_T L2
ENSG00000162383 SLC1A7 399727 sc-eQTL 8.31e-01 -0.0335 0.157 0.05 Pro_T L2
ENSG00000162384 CZIB 321725 sc-eQTL 4.55e-01 -0.14 0.186 0.05 Pro_T L2
ENSG00000162385 MAGOH 303841 sc-eQTL 9.03e-01 -0.0184 0.151 0.05 Pro_T L2
ENSG00000182183 SHISAL2A 909191 sc-eQTL 4.63e-01 0.132 0.18 0.05 Pro_T L2
ENSG00000215883 CYB5RL -657677 sc-eQTL 5.83e-01 -0.0895 0.163 0.05 Pro_T L2
ENSG00000058799 YIPF1 -347439 sc-eQTL 2.24e-01 0.228 0.187 0.051 cDC L2
ENSG00000058804 NDC1 -296104 sc-eQTL 9.85e-01 -0.00367 0.19 0.051 cDC L2
ENSG00000081870 HSPB11 -403570 sc-eQTL 7.15e-01 0.0734 0.201 0.051 cDC L2
ENSG00000116157 GPX7 939988 sc-eQTL 3.82e-01 -0.148 0.169 0.051 cDC L2
ENSG00000116171 SCP2 615083 sc-eQTL 1.54e-01 -0.237 0.166 0.051 cDC L2
ENSG00000116205 TCEANC2 -511225 sc-eQTL 4.35e-01 -0.143 0.183 0.051 cDC L2
ENSG00000116209 TMEM59 -511145 sc-eQTL 6.62e-01 -0.0682 0.156 0.051 cDC L2
ENSG00000116212 LRRC42 -403726 sc-eQTL 9.67e-01 0.00777 0.19 0.051 cDC L2
ENSG00000116221 MRPL37 -641682 sc-eQTL 1.32e-03 0.632 0.194 0.051 cDC L2
ENSG00000121310 ECHDC2 615147 sc-eQTL 2.89e-02 -0.42 0.191 0.051 cDC L2
ENSG00000134744 TUT4 988872 sc-eQTL 1.29e-01 -0.305 0.2 0.051 cDC L2
ENSG00000157184 CPT2 345567 sc-eQTL 1.10e-01 0.309 0.192 0.051 cDC L2
ENSG00000157193 LRP8 213890 sc-eQTL 2.76e-01 -0.215 0.197 0.051 cDC L2
ENSG00000157216 SSBP3 -871120 sc-eQTL 7.15e-01 0.0672 0.184 0.051 cDC L2
ENSG00000162377 COA7 844012 sc-eQTL 3.73e-01 -0.17 0.19 0.051 cDC L2
ENSG00000162378 ZYG11B 815906 sc-eQTL 9.95e-01 0.00127 0.201 0.051 cDC L2
ENSG00000162384 CZIB 321725 sc-eQTL 2.62e-01 0.203 0.18 0.051 cDC L2
ENSG00000162385 MAGOH 303841 sc-eQTL 1.35e-01 0.248 0.165 0.051 cDC L2
ENSG00000162390 ACOT11 -999898 sc-eQTL 6.27e-01 -0.0831 0.171 0.051 cDC L2
ENSG00000215883 CYB5RL -657677 sc-eQTL 7.22e-01 0.0587 0.164 0.051 cDC L2
ENSG00000230138 LINC02812 174114 sc-eQTL 8.52e-01 -0.0318 0.17 0.051 cDC L2
ENSG00000058799 YIPF1 -347439 sc-eQTL 6.17e-02 0.35 0.186 0.051 intMono L2
ENSG00000058804 NDC1 -296104 sc-eQTL 9.68e-01 -0.00763 0.193 0.051 intMono L2
ENSG00000081870 HSPB11 -403570 sc-eQTL 1.05e-01 -0.297 0.183 0.051 intMono L2
ENSG00000116171 SCP2 615083 sc-eQTL 4.11e-01 -0.13 0.157 0.051 intMono L2
ENSG00000116205 TCEANC2 -511225 sc-eQTL 1.83e-01 0.233 0.174 0.051 intMono L2
ENSG00000116209 TMEM59 -511145 sc-eQTL 3.81e-01 0.113 0.128 0.051 intMono L2
ENSG00000116212 LRRC42 -403726 sc-eQTL 5.31e-01 0.127 0.202 0.051 intMono L2
ENSG00000116221 MRPL37 -641682 sc-eQTL 3.97e-01 0.167 0.196 0.051 intMono L2
ENSG00000121310 ECHDC2 615147 sc-eQTL 3.63e-01 0.174 0.191 0.051 intMono L2
ENSG00000134744 TUT4 988872 sc-eQTL 6.54e-01 0.0871 0.194 0.051 intMono L2
ENSG00000157184 CPT2 345567 sc-eQTL 7.72e-01 -0.0558 0.192 0.051 intMono L2
ENSG00000157193 LRP8 213890 sc-eQTL 6.85e-01 0.075 0.185 0.051 intMono L2
ENSG00000157216 SSBP3 -871120 sc-eQTL 6.96e-01 -0.0786 0.201 0.051 intMono L2
ENSG00000162377 COA7 844012 sc-eQTL 2.96e-01 0.19 0.182 0.051 intMono L2
ENSG00000162378 ZYG11B 815906 sc-eQTL 4.81e-01 -0.138 0.196 0.051 intMono L2
ENSG00000162384 CZIB 321725 sc-eQTL 3.83e-01 0.168 0.192 0.051 intMono L2
ENSG00000162385 MAGOH 303841 sc-eQTL 7.78e-01 -0.0449 0.159 0.051 intMono L2
ENSG00000058799 YIPF1 -347439 sc-eQTL 5.84e-01 -0.12 0.218 0.051 pDC L2
ENSG00000058804 NDC1 -296104 sc-eQTL 5.94e-01 0.116 0.218 0.051 pDC L2
ENSG00000081870 HSPB11 -403570 sc-eQTL 9.86e-01 0.00347 0.191 0.051 pDC L2
ENSG00000116157 GPX7 939988 sc-eQTL 1.15e-01 -0.266 0.168 0.051 pDC L2
ENSG00000116171 SCP2 615083 sc-eQTL 6.88e-01 -0.0815 0.203 0.051 pDC L2
ENSG00000116205 TCEANC2 -511225 sc-eQTL 4.46e-01 0.161 0.211 0.051 pDC L2
ENSG00000116209 TMEM59 -511145 sc-eQTL 9.53e-01 0.00995 0.169 0.051 pDC L2
ENSG00000116212 LRRC42 -403726 sc-eQTL 1.43e-01 0.307 0.208 0.051 pDC L2
ENSG00000116221 MRPL37 -641682 sc-eQTL 9.06e-02 -0.378 0.222 0.051 pDC L2
ENSG00000121310 ECHDC2 615147 sc-eQTL 3.10e-01 0.223 0.219 0.051 pDC L2
ENSG00000134744 TUT4 988872 sc-eQTL 6.87e-01 0.0734 0.182 0.051 pDC L2
ENSG00000157184 CPT2 345567 sc-eQTL 4.88e-02 0.414 0.209 0.051 pDC L2
ENSG00000157193 LRP8 213890 sc-eQTL 4.41e-01 -0.144 0.186 0.051 pDC L2
ENSG00000157216 SSBP3 -871120 sc-eQTL 8.55e-01 -0.0364 0.199 0.051 pDC L2
ENSG00000162377 COA7 844012 sc-eQTL 7.26e-02 -0.324 0.179 0.051 pDC L2
ENSG00000162378 ZYG11B 815906 sc-eQTL 3.94e-01 -0.185 0.217 0.051 pDC L2
ENSG00000162384 CZIB 321725 sc-eQTL 8.14e-01 -0.0516 0.219 0.051 pDC L2
ENSG00000162385 MAGOH 303841 sc-eQTL 9.06e-01 0.0232 0.196 0.051 pDC L2
ENSG00000162390 ACOT11 -999898 sc-eQTL 4.42e-01 0.0643 0.0835 0.051 pDC L2
ENSG00000215883 CYB5RL -657677 sc-eQTL 9.61e-01 -0.00951 0.193 0.051 pDC L2
ENSG00000230138 LINC02812 174114 sc-eQTL 5.39e-02 -0.289 0.149 0.051 pDC L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000162378 ZYG11B 815906 eQTL 0.024 -0.0942 0.0417 0.0 0.0 0.052
ENSG00000174348 PODN 480307 eQTL 0.0194 -0.0943 0.0403 0.00356 0.00107 0.052
ENSG00000182183 SHISAL2A 909191 eQTL 0.045 -0.0728 0.0363 0.0 0.0 0.052
ENSG00000215883 CYB5RL -657677 eQTL 0.0485 0.0782 0.0396 0.0 0.0 0.052

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000116205 \N -511225 1.58e-06 1.84e-06 3.25e-07 1.16e-06 3.6e-07 6.68e-07 1.6e-06 1.31e-07 1.2e-06 3.85e-07 1.86e-06 5.45e-07 2.72e-06 3.39e-07 9.73e-07 3.35e-07 7.93e-07 5.66e-07 7.02e-07 3.34e-07 2.93e-07 1.27e-06 7.52e-07 1.19e-07 1.69e-06 2.55e-07 4.62e-07 4.98e-07 1.18e-06 1.22e-06 6.68e-07 3.6e-08 5.2e-08 3.28e-07 3.18e-07 9.51e-08 1.05e-07 5.92e-08 3.87e-07 2.83e-08 5.43e-08 4.04e-06 5.45e-08 1.68e-07 1.69e-07 6.87e-08 9.19e-08 1.91e-09 4.68e-08
ENSG00000174348 PODN 480307 1.89e-06 2.35e-06 3.45e-07 1.27e-06 3.71e-07 6.22e-07 1.5e-06 1.56e-07 1.41e-06 3.99e-07 2.05e-06 5.7e-07 2.69e-06 5.23e-07 9.02e-07 4.12e-07 7.97e-07 5.76e-07 8.21e-07 4.38e-07 3.91e-07 1.6e-06 8.96e-07 1.58e-07 1.92e-06 3.02e-07 5.24e-07 5.8e-07 1.32e-06 1.29e-06 7.79e-07 4.32e-08 5.64e-08 4.29e-07 3.67e-07 1.48e-07 1.05e-07 6e-08 4.8e-07 1.63e-08 5.37e-08 4.1e-06 6.17e-08 1.68e-07 2.03e-07 7.84e-08 9.83e-08 1.98e-09 4.61e-08
ENSG00000226147 \N 547633 1.34e-06 1.38e-06 3.02e-07 8.58e-07 2.76e-07 6.09e-07 1.26e-06 9.78e-08 1.11e-06 2.67e-07 1.41e-06 5.08e-07 2.46e-06 2.83e-07 5.74e-07 2.69e-07 7.22e-07 5.27e-07 5.31e-07 2.27e-07 2.38e-07 9.92e-07 6.33e-07 7.36e-08 1.39e-06 2.53e-07 3.48e-07 4.11e-07 8.97e-07 1e-06 6.02e-07 3.03e-08 4.74e-08 2.31e-07 3.57e-07 6.83e-08 7.97e-08 6.98e-08 2.32e-07 3.09e-08 5.14e-08 3.32e-06 5.54e-08 1.68e-07 1.34e-07 3.54e-08 9.23e-08 1.88e-09 4.98e-08
ENSG00000280378 \N -492521 1.68e-06 2.05e-06 3.45e-07 1.18e-06 3.45e-07 6.45e-07 1.53e-06 1.45e-07 1.28e-06 3.78e-07 1.85e-06 5.77e-07 2.64e-06 4.3e-07 9.19e-07 3.96e-07 8.4e-07 5.45e-07 8.13e-07 3.99e-07 3.6e-07 1.45e-06 8.95e-07 1.25e-07 1.86e-06 2.9e-07 4.97e-07 5.44e-07 1.28e-06 1.25e-06 7.58e-07 3.84e-08 4.93e-08 3.66e-07 3.35e-07 1.21e-07 1.08e-07 5.36e-08 4.12e-07 1.56e-08 5e-08 3.88e-06 5.85e-08 1.68e-07 1.94e-07 7.43e-08 1.03e-07 1.95e-09 4.47e-08