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Genes within 1Mb (chr1:53238600:C:A):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000058799 YIPF1 -651198 sc-eQTL 7.29e-01 0.0691 0.199 0.05 CD8_TEM L2
ENSG00000058804 NDC1 -599863 sc-eQTL 5.27e-01 -0.12 0.189 0.05 CD8_TEM L2
ENSG00000081870 HSPB11 -707329 sc-eQTL 7.13e-01 0.0659 0.179 0.05 CD8_TEM L2
ENSG00000116157 GPX7 636229 sc-eQTL 2.34e-01 -0.229 0.192 0.05 CD8_TEM L2
ENSG00000116171 SCP2 311324 sc-eQTL 1.31e-01 0.246 0.163 0.05 CD8_TEM L2
ENSG00000116205 TCEANC2 -814984 sc-eQTL 9.84e-01 -0.00387 0.194 0.05 CD8_TEM L2
ENSG00000116209 TMEM59 -814904 sc-eQTL 2.53e-02 0.417 0.185 0.05 CD8_TEM L2
ENSG00000116212 LRRC42 -707485 sc-eQTL 9.07e-01 0.0235 0.202 0.05 CD8_TEM L2
ENSG00000116221 MRPL37 -945441 sc-eQTL 4.11e-01 -0.156 0.189 0.05 CD8_TEM L2
ENSG00000121310 ECHDC2 311388 sc-eQTL 3.45e-01 -0.196 0.207 0.05 CD8_TEM L2
ENSG00000134744 TUT4 685113 sc-eQTL 6.22e-01 0.0913 0.185 0.05 CD8_TEM L2
ENSG00000134748 PRPF38A 833998 sc-eQTL 5.83e-01 -0.106 0.193 0.05 CD8_TEM L2
ENSG00000154222 CC2D1B 872407 sc-eQTL 9.17e-01 -0.0199 0.191 0.05 CD8_TEM L2
ENSG00000157184 CPT2 41808 sc-eQTL 8.86e-02 0.334 0.195 0.05 CD8_TEM L2
ENSG00000157193 LRP8 -89869 sc-eQTL 9.58e-01 -0.0101 0.189 0.05 CD8_TEM L2
ENSG00000162378 ZYG11B 512147 sc-eQTL 1.54e-01 -0.278 0.194 0.05 CD8_TEM L2
ENSG00000162383 SLC1A7 95968 sc-eQTL 5.07e-01 0.081 0.122 0.05 CD8_TEM L2
ENSG00000162384 CZIB 17966 sc-eQTL 3.01e-01 0.209 0.201 0.05 CD8_TEM L2
ENSG00000162385 MAGOH 82 sc-eQTL 2.52e-01 0.195 0.17 0.05 CD8_TEM L2
ENSG00000182183 SHISAL2A 605432 sc-eQTL 5.67e-01 0.106 0.185 0.05 CD8_TEM L2
ENSG00000058799 YIPF1 -651198 sc-eQTL 2.57e-02 -0.43 0.191 0.05 NK_HLA L2
ENSG00000058804 NDC1 -599863 sc-eQTL 6.80e-01 0.08 0.193 0.05 NK_HLA L2
ENSG00000081870 HSPB11 -707329 sc-eQTL 8.44e-01 -0.0362 0.184 0.05 NK_HLA L2
ENSG00000116157 GPX7 636229 sc-eQTL 6.35e-01 -0.0898 0.189 0.05 NK_HLA L2
ENSG00000116171 SCP2 311324 sc-eQTL 7.45e-01 -0.0492 0.151 0.05 NK_HLA L2
ENSG00000116205 TCEANC2 -814984 sc-eQTL 4.29e-01 -0.141 0.178 0.05 NK_HLA L2
ENSG00000116209 TMEM59 -814904 sc-eQTL 7.68e-01 0.0522 0.177 0.05 NK_HLA L2
ENSG00000116212 LRRC42 -707485 sc-eQTL 7.45e-01 0.0624 0.191 0.05 NK_HLA L2
ENSG00000116221 MRPL37 -945441 sc-eQTL 8.13e-01 -0.0462 0.195 0.05 NK_HLA L2
ENSG00000121310 ECHDC2 311388 sc-eQTL 2.20e-01 -0.238 0.194 0.05 NK_HLA L2
ENSG00000134744 TUT4 685113 sc-eQTL 5.79e-01 -0.107 0.192 0.05 NK_HLA L2
ENSG00000134748 PRPF38A 833998 sc-eQTL 9.31e-01 -0.0169 0.194 0.05 NK_HLA L2
ENSG00000154222 CC2D1B 872407 sc-eQTL 2.29e-01 -0.242 0.2 0.05 NK_HLA L2
ENSG00000157184 CPT2 41808 sc-eQTL 7.76e-01 -0.0514 0.18 0.05 NK_HLA L2
ENSG00000157193 LRP8 -89869 sc-eQTL 6.57e-01 -0.0811 0.183 0.05 NK_HLA L2
ENSG00000162377 COA7 540253 sc-eQTL 6.41e-01 -0.0803 0.172 0.05 NK_HLA L2
ENSG00000162378 ZYG11B 512147 sc-eQTL 1.23e-03 0.604 0.184 0.05 NK_HLA L2
ENSG00000162383 SLC1A7 95968 sc-eQTL 3.53e-01 0.162 0.174 0.05 NK_HLA L2
ENSG00000162384 CZIB 17966 sc-eQTL 9.11e-01 -0.0206 0.183 0.05 NK_HLA L2
ENSG00000162385 MAGOH 82 sc-eQTL 9.25e-01 0.0164 0.175 0.05 NK_HLA L2
ENSG00000174348 PODN 176548 sc-eQTL 7.22e-02 -0.326 0.18 0.05 NK_HLA L2
ENSG00000182183 SHISAL2A 605432 sc-eQTL 2.28e-02 0.434 0.189 0.05 NK_HLA L2
ENSG00000058799 YIPF1 -651198 sc-eQTL 7.05e-04 0.473 0.136 0.052 PB L2
ENSG00000058804 NDC1 -599863 sc-eQTL 3.96e-03 0.604 0.205 0.052 PB L2
ENSG00000081870 HSPB11 -707329 sc-eQTL 6.22e-01 0.0885 0.179 0.052 PB L2
ENSG00000116157 GPX7 636229 sc-eQTL 2.92e-01 0.188 0.178 0.052 PB L2
ENSG00000116171 SCP2 311324 sc-eQTL 7.10e-02 0.279 0.153 0.052 PB L2
ENSG00000116205 TCEANC2 -814984 sc-eQTL 1.99e-01 0.282 0.218 0.052 PB L2
ENSG00000116209 TMEM59 -814904 sc-eQTL 4.75e-01 -0.0657 0.0916 0.052 PB L2
ENSG00000116212 LRRC42 -707485 sc-eQTL 3.81e-01 -0.182 0.206 0.052 PB L2
ENSG00000116221 MRPL37 -945441 sc-eQTL 1.66e-02 -0.395 0.163 0.052 PB L2
ENSG00000121310 ECHDC2 311388 sc-eQTL 3.47e-02 -0.484 0.226 0.052 PB L2
ENSG00000134744 TUT4 685113 sc-eQTL 5.63e-01 -0.122 0.211 0.052 PB L2
ENSG00000134748 PRPF38A 833998 sc-eQTL 2.80e-01 -0.215 0.198 0.052 PB L2
ENSG00000154222 CC2D1B 872407 sc-eQTL 2.97e-01 -0.228 0.218 0.052 PB L2
ENSG00000157184 CPT2 41808 sc-eQTL 2.00e-01 -0.254 0.197 0.052 PB L2
ENSG00000157193 LRP8 -89869 sc-eQTL 3.14e-01 -0.211 0.209 0.052 PB L2
ENSG00000162377 COA7 540253 sc-eQTL 9.04e-01 -0.0247 0.204 0.052 PB L2
ENSG00000162378 ZYG11B 512147 sc-eQTL 6.84e-01 -0.0911 0.223 0.052 PB L2
ENSG00000162384 CZIB 17966 sc-eQTL 1.07e-01 -0.352 0.216 0.052 PB L2
ENSG00000162385 MAGOH 82 sc-eQTL 4.96e-01 -0.138 0.202 0.052 PB L2
ENSG00000182183 SHISAL2A 605432 sc-eQTL 1.84e-01 -0.246 0.184 0.052 PB L2
ENSG00000215883 CYB5RL -961436 sc-eQTL 9.45e-01 -0.0157 0.227 0.052 PB L2
ENSG00000230138 LINC02812 -129645 sc-eQTL 7.05e-01 0.0617 0.163 0.052 PB L2
ENSG00000058799 YIPF1 -651198 sc-eQTL 9.46e-01 0.0144 0.211 0.058 gdT L2
ENSG00000058804 NDC1 -599863 sc-eQTL 3.09e-01 -0.21 0.205 0.058 gdT L2
ENSG00000081870 HSPB11 -707329 sc-eQTL 2.95e-02 -0.508 0.231 0.058 gdT L2
ENSG00000085840 ORC1 834177 sc-eQTL 5.22e-01 0.107 0.167 0.058 gdT L2
ENSG00000116157 GPX7 636229 sc-eQTL 7.41e-01 0.0692 0.209 0.058 gdT L2
ENSG00000116171 SCP2 311324 sc-eQTL 8.36e-01 -0.0334 0.161 0.058 gdT L2
ENSG00000116205 TCEANC2 -814984 sc-eQTL 1.52e-01 0.27 0.188 0.058 gdT L2
ENSG00000116209 TMEM59 -814904 sc-eQTL 5.18e-01 0.124 0.192 0.058 gdT L2
ENSG00000116212 LRRC42 -707485 sc-eQTL 6.69e-01 -0.0966 0.225 0.058 gdT L2
ENSG00000116221 MRPL37 -945441 sc-eQTL 9.29e-01 0.0197 0.22 0.058 gdT L2
ENSG00000121310 ECHDC2 311388 sc-eQTL 5.96e-01 0.124 0.233 0.058 gdT L2
ENSG00000134744 TUT4 685113 sc-eQTL 8.61e-01 -0.0393 0.224 0.058 gdT L2
ENSG00000134748 PRPF38A 833998 sc-eQTL 2.57e-01 -0.254 0.223 0.058 gdT L2
ENSG00000154222 CC2D1B 872407 sc-eQTL 2.68e-01 -0.224 0.201 0.058 gdT L2
ENSG00000157184 CPT2 41808 sc-eQTL 9.16e-01 0.0234 0.222 0.058 gdT L2
ENSG00000157193 LRP8 -89869 sc-eQTL 3.02e-01 0.225 0.217 0.058 gdT L2
ENSG00000162377 COA7 540253 sc-eQTL 8.89e-01 -0.0274 0.195 0.058 gdT L2
ENSG00000162378 ZYG11B 512147 sc-eQTL 8.47e-01 0.0411 0.213 0.058 gdT L2
ENSG00000162383 SLC1A7 95968 sc-eQTL 9.15e-01 -0.0159 0.15 0.058 gdT L2
ENSG00000162384 CZIB 17966 sc-eQTL 6.36e-01 0.0985 0.207 0.058 gdT L2
ENSG00000162385 MAGOH 82 sc-eQTL 8.66e-01 0.0358 0.212 0.058 gdT L2
ENSG00000182183 SHISAL2A 605432 sc-eQTL 2.22e-01 0.246 0.2 0.058 gdT L2
ENSG00000215883 CYB5RL -961436 sc-eQTL 7.20e-01 -0.0677 0.188 0.058 gdT L2
ENSG00000058799 YIPF1 -651198 sc-eQTL 5.39e-01 0.123 0.2 0.051 pDC L2
ENSG00000058804 NDC1 -599863 sc-eQTL 8.91e-01 -0.0275 0.199 0.051 pDC L2
ENSG00000081870 HSPB11 -707329 sc-eQTL 1.19e-02 -0.437 0.172 0.051 pDC L2
ENSG00000116157 GPX7 636229 sc-eQTL 5.06e-01 0.103 0.155 0.051 pDC L2
ENSG00000116171 SCP2 311324 sc-eQTL 7.56e-01 -0.0577 0.186 0.051 pDC L2
ENSG00000116205 TCEANC2 -814984 sc-eQTL 6.18e-01 -0.0964 0.193 0.051 pDC L2
ENSG00000116209 TMEM59 -814904 sc-eQTL 7.23e-01 -0.0548 0.154 0.051 pDC L2
ENSG00000116212 LRRC42 -707485 sc-eQTL 3.40e-01 0.183 0.192 0.051 pDC L2
ENSG00000116221 MRPL37 -945441 sc-eQTL 3.76e-02 -0.424 0.202 0.051 pDC L2
ENSG00000121310 ECHDC2 311388 sc-eQTL 4.59e-01 -0.149 0.201 0.051 pDC L2
ENSG00000134744 TUT4 685113 sc-eQTL 5.86e-01 -0.0908 0.166 0.051 pDC L2
ENSG00000134748 PRPF38A 833998 sc-eQTL 9.17e-01 -0.0223 0.214 0.051 pDC L2
ENSG00000154222 CC2D1B 872407 sc-eQTL 2.16e-01 -0.252 0.203 0.051 pDC L2
ENSG00000157184 CPT2 41808 sc-eQTL 6.68e-01 -0.083 0.193 0.051 pDC L2
ENSG00000157193 LRP8 -89869 sc-eQTL 1.46e-01 -0.248 0.17 0.051 pDC L2
ENSG00000162377 COA7 540253 sc-eQTL 8.83e-01 -0.0245 0.166 0.051 pDC L2
ENSG00000162378 ZYG11B 512147 sc-eQTL 9.69e-02 0.33 0.197 0.051 pDC L2
ENSG00000162384 CZIB 17966 sc-eQTL 4.98e-01 -0.136 0.2 0.051 pDC L2
ENSG00000162385 MAGOH 82 sc-eQTL 1.55e-01 0.254 0.178 0.051 pDC L2
ENSG00000215883 CYB5RL -961436 sc-eQTL 1.22e-01 0.273 0.175 0.051 pDC L2
ENSG00000230138 LINC02812 -129645 sc-eQTL 5.91e-01 -0.074 0.138 0.051 pDC L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000116157 GPX7 636229 eQTL 0.0326 -0.118 0.055 0.00123 0.0 0.0559
ENSG00000162384 CZIB 17966 eQTL 7.73e-06 -0.139 0.031 0.0 0.0 0.0559
ENSG00000226754 AL606760.1 -10 eQTL 0.00169 0.278 0.0881 0.00679 0.00392 0.0559
ENSG00000285954 AC119428.3 -105431 eQTL 0.0593 -0.144 0.0763 0.0011 0.0 0.0559

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000121310 \N 311388 1.26e-06 4.97e-07 6.57e-08 3.48e-07 9.25e-08 2.46e-07 1.07e-06 5.2e-08 4.19e-07 4.94e-08 5.73e-07 1.01e-07 5.54e-07 8.26e-08 6e-08 1.06e-07 4.63e-08 1.77e-07 5.82e-08 4.03e-08 1.39e-07 2.15e-07 4.13e-07 4.54e-08 2.99e-07 1.14e-07 1.57e-07 9.65e-08 2.84e-07 3.3e-07 2.11e-07 3.19e-08 3.26e-08 9.81e-08 3.07e-07 3.94e-08 4.85e-08 9.22e-08 8.3e-08 3e-08 3.44e-08 7.7e-07 4.12e-08 2.66e-08 7.79e-08 1.83e-08 1.24e-07 4.82e-09 4.72e-08
ENSG00000134748 \N 833998 2.91e-07 1.11e-07 3.31e-08 1.84e-07 1.02e-07 9.8e-08 1.67e-07 5.29e-08 1.4e-07 3.99e-08 1.59e-07 7.6e-08 1.26e-07 6.21e-08 4.77e-08 7.87e-08 4.94e-08 1.07e-07 5.12e-08 2.88e-08 1.05e-07 1.33e-07 1.34e-07 5.19e-08 1.29e-07 1.09e-07 1.1e-07 8.49e-08 1.05e-07 1.09e-07 9.58e-08 3.29e-08 2.75e-08 8.25e-08 8.76e-08 4.19e-08 4.7e-08 8.75e-08 8.44e-08 3.87e-08 3.31e-08 1.36e-07 3.98e-08 0.0 1.12e-07 1.83e-08 1.46e-07 4.96e-09 4.72e-08
ENSG00000157184 \N 41808 3.69e-05 1.52e-05 2.57e-06 4.79e-06 1.71e-06 6.19e-06 1.83e-05 1.91e-06 1.49e-05 4.05e-06 2.01e-05 5.09e-06 2.79e-05 5.36e-06 3.46e-06 7.21e-06 5.65e-06 3.79e-06 2.2e-06 2.86e-06 5.81e-06 1.36e-05 1.72e-05 2.21e-06 1.67e-05 2.07e-06 5.21e-06 3.37e-06 1.58e-05 8.64e-06 7.63e-06 1.07e-06 1.22e-06 5.28e-06 6.01e-06 1.61e-06 1.55e-06 2.07e-06 1.62e-06 1.5e-06 1.64e-06 3.71e-05 2.81e-06 1.57e-07 1.05e-06 2.45e-06 1.06e-06 6.8e-07 5.6e-07
ENSG00000162377 \N 540253 5.59e-07 1.33e-07 3.88e-08 2.2e-07 9.91e-08 8.89e-08 3.57e-07 5.24e-08 1.5e-07 4.23e-08 1.73e-07 8.03e-08 1.53e-07 6.76e-08 4.89e-08 7.17e-08 3.9e-08 1.14e-07 5.2e-08 3.15e-08 1.13e-07 1.27e-07 1.64e-07 5.01e-08 1.4e-07 1.13e-07 1.07e-07 8.71e-08 1.24e-07 1.03e-07 9.92e-08 3.29e-08 2.74e-08 8.55e-08 3.51e-08 4.02e-08 5.1e-08 9.2e-08 8.3e-08 3.74e-08 3.07e-08 1.55e-07 5.22e-08 0.0 1.09e-07 1.78e-08 1.44e-07 4.96e-09 4.72e-08
ENSG00000174348 \N 176548 2.28e-06 1.13e-06 1.48e-07 5.88e-07 1.07e-07 6.25e-07 1.59e-06 1.31e-07 1.74e-06 2.26e-07 1.84e-06 4.28e-07 2.43e-06 2.68e-07 1.57e-07 7.13e-07 7.68e-07 4.65e-07 1.55e-07 8.69e-08 5.47e-07 1.2e-06 1.35e-06 4.07e-08 1.85e-06 2.4e-07 7.12e-07 1.85e-07 1.46e-06 1.34e-06 7.1e-07 3.68e-08 4.34e-08 6.99e-07 5.41e-07 5.41e-08 4.47e-08 9.33e-08 5.8e-08 5.61e-08 5.28e-08 2.5e-06 3.74e-07 1.09e-08 4.06e-08 3.92e-08 7.66e-08 4.09e-09 4.91e-08