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Genes within 1Mb (chr1:54220371:C:T):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000006555 TTC22 -580952 sc-eQTL 3.75e-02 0.385 0.184 0.05 CD4_CTL L2
ENSG00000058799 YIPF1 330573 sc-eQTL 1.03e-01 -0.321 0.196 0.05 CD4_CTL L2
ENSG00000058804 NDC1 381908 sc-eQTL 6.08e-01 0.0997 0.194 0.05 CD4_CTL L2
ENSG00000081870 HSPB11 274442 sc-eQTL 3.90e-01 0.174 0.202 0.05 CD4_CTL L2
ENSG00000116205 TCEANC2 166787 sc-eQTL 5.33e-01 0.119 0.191 0.05 CD4_CTL L2
ENSG00000116209 TMEM59 166867 sc-eQTL 9.65e-02 -0.289 0.173 0.05 CD4_CTL L2
ENSG00000116212 LRRC42 274286 sc-eQTL 2.40e-02 0.433 0.191 0.05 CD4_CTL L2
ENSG00000116221 MRPL37 36330 sc-eQTL 8.03e-03 -0.563 0.21 0.05 CD4_CTL L2
ENSG00000157193 LRP8 891902 sc-eQTL 6.39e-01 -0.0932 0.199 0.05 CD4_CTL L2
ENSG00000157216 SSBP3 -193108 sc-eQTL 9.12e-01 0.0146 0.132 0.05 CD4_CTL L2
ENSG00000162384 CZIB 999737 sc-eQTL 4.69e-01 -0.151 0.208 0.05 CD4_CTL L2
ENSG00000162385 MAGOH 981853 sc-eQTL 8.72e-01 -0.0307 0.19 0.05 CD4_CTL L2
ENSG00000162402 USP24 -994993 sc-eQTL 6.59e-01 0.08 0.181 0.05 CD4_CTL L2
ENSG00000243725 TTC4 -495490 sc-eQTL 6.66e-01 -0.0875 0.202 0.05 CD4_CTL L2
ENSG00000006555 TTC22 -580952 sc-eQTL 8.42e-01 0.038 0.191 0.051 CD8_TCM L2
ENSG00000058799 YIPF1 330573 sc-eQTL 1.35e-01 0.305 0.203 0.051 CD8_TCM L2
ENSG00000058804 NDC1 381908 sc-eQTL 2.37e-01 -0.225 0.189 0.051 CD8_TCM L2
ENSG00000081870 HSPB11 274442 sc-eQTL 6.10e-01 -0.0898 0.176 0.051 CD8_TCM L2
ENSG00000116205 TCEANC2 166787 sc-eQTL 5.95e-01 -0.102 0.192 0.051 CD8_TCM L2
ENSG00000116209 TMEM59 166867 sc-eQTL 1.46e-01 0.245 0.168 0.051 CD8_TCM L2
ENSG00000116212 LRRC42 274286 sc-eQTL 2.86e-01 -0.214 0.2 0.051 CD8_TCM L2
ENSG00000116221 MRPL37 36330 sc-eQTL 6.15e-01 0.0967 0.192 0.051 CD8_TCM L2
ENSG00000157193 LRP8 891902 sc-eQTL 5.17e-01 -0.115 0.178 0.051 CD8_TCM L2
ENSG00000157216 SSBP3 -193108 sc-eQTL 2.63e-02 0.368 0.164 0.051 CD8_TCM L2
ENSG00000162384 CZIB 999737 sc-eQTL 7.03e-02 0.343 0.189 0.051 CD8_TCM L2
ENSG00000162385 MAGOH 981853 sc-eQTL 6.32e-01 -0.0862 0.18 0.051 CD8_TCM L2
ENSG00000162402 USP24 -994993 sc-eQTL 9.20e-01 -0.0162 0.161 0.051 CD8_TCM L2
ENSG00000243725 TTC4 -495490 sc-eQTL 1.94e-01 0.254 0.195 0.051 CD8_TCM L2
ENSG00000006555 TTC22 -580952 sc-eQTL 2.45e-01 0.211 0.181 0.05 CD8_TEM L2
ENSG00000058799 YIPF1 330573 sc-eQTL 2.25e-01 -0.236 0.194 0.05 CD8_TEM L2
ENSG00000058804 NDC1 381908 sc-eQTL 6.35e-01 0.0879 0.185 0.05 CD8_TEM L2
ENSG00000081870 HSPB11 274442 sc-eQTL 8.66e-01 0.0298 0.175 0.05 CD8_TEM L2
ENSG00000116205 TCEANC2 166787 sc-eQTL 8.91e-01 -0.0261 0.189 0.05 CD8_TEM L2
ENSG00000116209 TMEM59 166867 sc-eQTL 3.96e-01 0.156 0.183 0.05 CD8_TEM L2
ENSG00000116212 LRRC42 274286 sc-eQTL 5.92e-01 -0.106 0.197 0.05 CD8_TEM L2
ENSG00000116221 MRPL37 36330 sc-eQTL 7.47e-01 -0.0601 0.186 0.05 CD8_TEM L2
ENSG00000157193 LRP8 891902 sc-eQTL 7.09e-01 -0.0691 0.185 0.05 CD8_TEM L2
ENSG00000157216 SSBP3 -193108 sc-eQTL 6.37e-01 -0.0829 0.176 0.05 CD8_TEM L2
ENSG00000162384 CZIB 999737 sc-eQTL 2.71e-02 -0.434 0.195 0.05 CD8_TEM L2
ENSG00000162385 MAGOH 981853 sc-eQTL 5.22e-01 0.107 0.167 0.05 CD8_TEM L2
ENSG00000162402 USP24 -994993 sc-eQTL 7.15e-01 -0.0678 0.185 0.05 CD8_TEM L2
ENSG00000243725 TTC4 -495490 sc-eQTL 9.58e-01 -0.00997 0.188 0.05 CD8_TEM L2
ENSG00000006555 TTC22 -580952 sc-eQTL 2.28e-01 -0.232 0.192 0.056 PB L2
ENSG00000058799 YIPF1 330573 sc-eQTL 9.19e-01 -0.0138 0.136 0.056 PB L2
ENSG00000058804 NDC1 381908 sc-eQTL 2.60e-01 -0.227 0.201 0.056 PB L2
ENSG00000081870 HSPB11 274442 sc-eQTL 7.69e-01 0.0502 0.17 0.056 PB L2
ENSG00000116133 DHCR24 -666824 sc-eQTL 2.23e-01 0.209 0.17 0.056 PB L2
ENSG00000116205 TCEANC2 166787 sc-eQTL 1.41e-01 0.306 0.206 0.056 PB L2
ENSG00000116209 TMEM59 166867 sc-eQTL 3.60e-01 -0.0797 0.0868 0.056 PB L2
ENSG00000116212 LRRC42 274286 sc-eQTL 3.78e-03 0.56 0.189 0.056 PB L2
ENSG00000116221 MRPL37 36330 sc-eQTL 6.92e-03 -0.422 0.153 0.056 PB L2
ENSG00000157193 LRP8 891902 sc-eQTL 4.51e-01 0.15 0.199 0.056 PB L2
ENSG00000157216 SSBP3 -193108 sc-eQTL 9.09e-01 -0.021 0.183 0.056 PB L2
ENSG00000162384 CZIB 999737 sc-eQTL 6.55e-01 -0.093 0.208 0.056 PB L2
ENSG00000162385 MAGOH 981853 sc-eQTL 1.96e-01 0.248 0.191 0.056 PB L2
ENSG00000162402 USP24 -994993 sc-eQTL 1.65e-01 -0.288 0.206 0.056 PB L2
ENSG00000215883 CYB5RL 20335 sc-eQTL 9.12e-01 -0.0237 0.215 0.056 PB L2
ENSG00000230138 LINC02812 852126 sc-eQTL 8.63e-01 -0.0267 0.155 0.056 PB L2
ENSG00000243725 TTC4 -495490 sc-eQTL 4.01e-01 -0.169 0.2 0.056 PB L2
ENSG00000006555 TTC22 -580952 sc-eQTL 3.91e-01 -0.147 0.171 0.05 Pro_T L2
ENSG00000058799 YIPF1 330573 sc-eQTL 3.99e-01 0.137 0.162 0.05 Pro_T L2
ENSG00000058804 NDC1 381908 sc-eQTL 1.72e-01 -0.175 0.128 0.05 Pro_T L2
ENSG00000081870 HSPB11 274442 sc-eQTL 3.91e-01 -0.0991 0.115 0.05 Pro_T L2
ENSG00000116133 DHCR24 -666824 sc-eQTL 4.46e-01 0.111 0.145 0.05 Pro_T L2
ENSG00000116205 TCEANC2 166787 sc-eQTL 2.57e-01 0.201 0.177 0.05 Pro_T L2
ENSG00000116209 TMEM59 166867 sc-eQTL 9.91e-01 0.00144 0.123 0.05 Pro_T L2
ENSG00000116212 LRRC42 274286 sc-eQTL 3.47e-01 -0.149 0.158 0.05 Pro_T L2
ENSG00000116221 MRPL37 36330 sc-eQTL 8.91e-02 -0.205 0.12 0.05 Pro_T L2
ENSG00000157193 LRP8 891902 sc-eQTL 3.02e-01 0.171 0.165 0.05 Pro_T L2
ENSG00000157216 SSBP3 -193108 sc-eQTL 8.96e-01 -0.0177 0.135 0.05 Pro_T L2
ENSG00000162384 CZIB 999737 sc-eQTL 6.43e-01 -0.0867 0.187 0.05 Pro_T L2
ENSG00000162385 MAGOH 981853 sc-eQTL 4.23e-02 -0.306 0.15 0.05 Pro_T L2
ENSG00000162402 USP24 -994993 sc-eQTL 3.22e-01 0.164 0.165 0.05 Pro_T L2
ENSG00000215883 CYB5RL 20335 sc-eQTL 2.96e-01 0.17 0.163 0.05 Pro_T L2
ENSG00000243725 TTC4 -495490 sc-eQTL 8.72e-01 0.0292 0.181 0.05 Pro_T L2
ENSG00000058799 YIPF1 330573 sc-eQTL 4.06e-01 -0.156 0.188 0.051 cDC L2
ENSG00000058804 NDC1 381908 sc-eQTL 3.89e-01 0.164 0.19 0.051 cDC L2
ENSG00000081870 HSPB11 274442 sc-eQTL 9.73e-01 -0.00685 0.201 0.051 cDC L2
ENSG00000116133 DHCR24 -666824 sc-eQTL 6.50e-01 -0.0708 0.156 0.051 cDC L2
ENSG00000116205 TCEANC2 166787 sc-eQTL 3.47e-01 -0.173 0.183 0.051 cDC L2
ENSG00000116209 TMEM59 166867 sc-eQTL 7.19e-01 -0.0563 0.156 0.051 cDC L2
ENSG00000116212 LRRC42 274286 sc-eQTL 9.02e-01 -0.0234 0.191 0.051 cDC L2
ENSG00000116221 MRPL37 36330 sc-eQTL 9.78e-01 -0.00558 0.2 0.051 cDC L2
ENSG00000157193 LRP8 891902 sc-eQTL 2.59e-01 -0.224 0.198 0.051 cDC L2
ENSG00000157216 SSBP3 -193108 sc-eQTL 5.42e-01 0.112 0.184 0.051 cDC L2
ENSG00000162384 CZIB 999737 sc-eQTL 1.60e-01 0.255 0.18 0.051 cDC L2
ENSG00000162385 MAGOH 981853 sc-eQTL 5.12e-01 0.109 0.166 0.051 cDC L2
ENSG00000162390 ACOT11 -321886 sc-eQTL 1.37e-01 0.254 0.17 0.051 cDC L2
ENSG00000162402 USP24 -994993 sc-eQTL 3.69e-01 0.173 0.192 0.051 cDC L2
ENSG00000215883 CYB5RL 20335 sc-eQTL 1.92e-01 -0.215 0.164 0.051 cDC L2
ENSG00000230138 LINC02812 852126 sc-eQTL 3.63e-01 -0.155 0.17 0.051 cDC L2
ENSG00000243725 TTC4 -495490 sc-eQTL 2.16e-02 -0.45 0.194 0.051 cDC L2
ENSG00000058799 YIPF1 330573 sc-eQTL 3.52e-01 -0.18 0.193 0.052 ncMono L2
ENSG00000058804 NDC1 381908 sc-eQTL 7.49e-01 -0.0613 0.191 0.052 ncMono L2
ENSG00000081870 HSPB11 274442 sc-eQTL 7.72e-01 0.0589 0.203 0.052 ncMono L2
ENSG00000116133 DHCR24 -666824 sc-eQTL 4.39e-01 0.113 0.146 0.052 ncMono L2
ENSG00000116205 TCEANC2 166787 sc-eQTL 5.51e-01 0.109 0.182 0.052 ncMono L2
ENSG00000116209 TMEM59 166867 sc-eQTL 3.60e-01 0.134 0.146 0.052 ncMono L2
ENSG00000116212 LRRC42 274286 sc-eQTL 8.26e-01 0.0438 0.199 0.052 ncMono L2
ENSG00000116221 MRPL37 36330 sc-eQTL 8.28e-01 -0.0409 0.188 0.052 ncMono L2
ENSG00000157193 LRP8 891902 sc-eQTL 7.70e-01 0.0602 0.205 0.052 ncMono L2
ENSG00000157216 SSBP3 -193108 sc-eQTL 9.99e-02 -0.338 0.204 0.052 ncMono L2
ENSG00000162384 CZIB 999737 sc-eQTL 1.77e-01 0.268 0.197 0.052 ncMono L2
ENSG00000162385 MAGOH 981853 sc-eQTL 5.99e-01 -0.0902 0.172 0.052 ncMono L2
ENSG00000162402 USP24 -994993 sc-eQTL 2.40e-01 0.193 0.164 0.052 ncMono L2
ENSG00000243725 TTC4 -495490 sc-eQTL 8.92e-01 0.0264 0.195 0.052 ncMono L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000116221 MRPL37 36330 eQTL 6.58e-08 -0.128 0.0236 0.0 0.0 0.0746
ENSG00000157193 LRP8 892301 eQTL 0.017 0.0923 0.0386 0.0 0.0 0.0746
ENSG00000157216 SSBP3 -193108 eQTL 1.25e-07 -0.134 0.0251 0.0249 0.0233 0.0746
ENSG00000162390 ACOT11 -321886 eQTL 0.0452 0.0853 0.0425 0.0 0.0 0.0746
ENSG00000285954 AC119428.3 876340 eQTL 0.0095 -0.17 0.0653 0.00251 0.0 0.0746

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000116133 \N -666824 1.31e-06 7.58e-07 8.02e-08 4.15e-07 1.05e-07 3.22e-07 6.19e-07 7.56e-08 4.43e-07 2.39e-07 9.39e-07 3.61e-07 9.65e-07 1.84e-07 2.26e-07 2e-07 2.77e-07 3.74e-07 1.93e-07 1.31e-07 1.76e-07 5.2e-07 4e-07 7.94e-08 1.3e-06 1.94e-07 3.93e-07 2.19e-07 3.83e-07 7.42e-07 3.32e-07 3.9e-08 5.75e-08 1.69e-07 3.42e-07 4.77e-08 1e-07 7.92e-08 5.98e-08 1.63e-08 6.31e-08 1.09e-06 5.62e-08 1.81e-08 8.59e-08 1.88e-08 8.21e-08 2.02e-09 4.69e-08
ENSG00000116221 MRPL37 36330 6.53e-05 1.71e-05 2.16e-06 1.03e-05 2.47e-06 1.29e-05 2.53e-05 2.45e-06 1.45e-05 7.65e-06 1.82e-05 6.98e-06 2.82e-05 6.03e-06 5.1e-06 9.88e-06 9.13e-06 1.87e-05 3.61e-06 3.25e-06 8.04e-06 1.73e-05 1.77e-05 4.71e-06 2.84e-05 5.01e-06 7.92e-06 6.89e-06 1.67e-05 1.55e-05 8.34e-06 1.08e-06 1.23e-06 4.07e-06 6.38e-06 2.81e-06 1.9e-06 1.86e-06 2.35e-06 1.38e-06 9.48e-07 2.52e-05 3.87e-06 1.66e-07 1.7e-06 1.76e-06 2.13e-06 7.66e-07 4.14e-07
ENSG00000157216 SSBP3 -193108 1.12e-05 6.47e-06 5.8e-07 3.69e-06 1.08e-06 2.56e-06 7e-06 9.62e-07 4.95e-06 2.42e-06 4.85e-06 3.37e-06 7.64e-06 2.13e-06 1.35e-06 3.32e-06 1.8e-06 3.49e-06 1.45e-06 9.89e-07 2.91e-06 4.83e-06 4.61e-06 1.87e-06 8.07e-06 1.23e-06 2.35e-06 1.72e-06 4.58e-06 4.71e-06 2.23e-06 3.82e-07 7.1e-07 1.9e-06 2.09e-06 1e-06 9.24e-07 3.84e-07 1.32e-06 4.08e-07 2.4e-07 7.97e-06 1.39e-06 8.96e-08 4.35e-07 3.5e-07 8.59e-07 2.22e-07 2.02e-07
ENSG00000184313 \N -421383 3.91e-06 2.06e-06 2.81e-07 1.57e-06 2.71e-07 7.28e-07 1.44e-06 3.34e-07 1.42e-06 6.14e-07 2.05e-06 7.5e-07 2.56e-06 5.4e-07 5.39e-07 9.16e-07 8.85e-07 7.89e-07 8.33e-07 6.55e-07 6.12e-07 1.93e-06 1.09e-06 5.98e-07 2.34e-06 2.99e-07 1.02e-06 6.88e-07 1.48e-06 1.3e-06 7.32e-07 3.28e-08 2.24e-07 6.27e-07 5.42e-07 3.1e-07 5.12e-07 1.13e-07 2.94e-07 2.03e-07 2.57e-07 2.7e-06 6.52e-07 1.23e-08 1.86e-07 1.24e-07 1.8e-07 3.09e-08 6.03e-08
ENSG00000198711 \N -16069 8.36e-05 2.24e-05 3.05e-06 1.27e-05 3.53e-06 1.82e-05 3.36e-05 3.36e-06 1.97e-05 1.13e-05 2.39e-05 9.14e-06 3.56e-05 8.78e-06 6.04e-06 1.4e-05 1.35e-05 2.86e-05 5.8e-06 4.51e-06 1.19e-05 2.46e-05 2.63e-05 7.06e-06 3.6e-05 6.16e-06 9.54e-06 9e-06 2.14e-05 2.14e-05 1.24e-05 1.23e-06 1.56e-06 5.41e-06 8.6e-06 3.83e-06 1.79e-06 2.16e-06 3.44e-06 2.38e-06 1.48e-06 3.29e-05 4.89e-06 1.44e-07 2.27e-06 2.6e-06 3.4e-06 8.11e-07 6.66e-07
ENSG00000215883 \N 20335 8.01e-05 2.13e-05 2.91e-06 1.22e-05 3.26e-06 1.72e-05 3.22e-05 3.36e-06 1.84e-05 1.02e-05 2.23e-05 8.31e-06 3.39e-05 7.86e-06 5.81e-06 1.29e-05 1.24e-05 2.56e-05 5.1e-06 4.29e-06 1.05e-05 2.33e-05 2.47e-05 6.4e-06 3.43e-05 5.97e-06 8.81e-06 8.42e-06 2.04e-05 2.02e-05 1.16e-05 1.17e-06 1.4e-06 5.15e-06 7.96e-06 3.3e-06 1.71e-06 2.04e-06 3.22e-06 2.17e-06 1.28e-06 3.12e-05 4.93e-06 1.67e-07 2.04e-06 2.45e-06 3.25e-06 6.88e-07 5.41e-07