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Genes within 1Mb (chr1:54219113:C:A):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000006555 TTC22 -582210 sc-eQTL 3.75e-02 0.385 0.184 0.05 CD4_CTL L2
ENSG00000058799 YIPF1 329315 sc-eQTL 1.03e-01 -0.321 0.196 0.05 CD4_CTL L2
ENSG00000058804 NDC1 380650 sc-eQTL 6.08e-01 0.0997 0.194 0.05 CD4_CTL L2
ENSG00000081870 HSPB11 273184 sc-eQTL 3.90e-01 0.174 0.202 0.05 CD4_CTL L2
ENSG00000116205 TCEANC2 165529 sc-eQTL 5.33e-01 0.119 0.191 0.05 CD4_CTL L2
ENSG00000116209 TMEM59 165609 sc-eQTL 9.65e-02 -0.289 0.173 0.05 CD4_CTL L2
ENSG00000116212 LRRC42 273028 sc-eQTL 2.40e-02 0.433 0.191 0.05 CD4_CTL L2
ENSG00000116221 MRPL37 35072 sc-eQTL 8.03e-03 -0.563 0.21 0.05 CD4_CTL L2
ENSG00000157193 LRP8 890644 sc-eQTL 6.39e-01 -0.0932 0.199 0.05 CD4_CTL L2
ENSG00000157216 SSBP3 -194366 sc-eQTL 9.12e-01 0.0146 0.132 0.05 CD4_CTL L2
ENSG00000162384 CZIB 998479 sc-eQTL 4.69e-01 -0.151 0.208 0.05 CD4_CTL L2
ENSG00000162385 MAGOH 980595 sc-eQTL 8.72e-01 -0.0307 0.19 0.05 CD4_CTL L2
ENSG00000162402 USP24 -996251 sc-eQTL 6.59e-01 0.08 0.181 0.05 CD4_CTL L2
ENSG00000243725 TTC4 -496748 sc-eQTL 6.66e-01 -0.0875 0.202 0.05 CD4_CTL L2
ENSG00000006555 TTC22 -582210 sc-eQTL 8.42e-01 0.038 0.191 0.051 CD8_TCM L2
ENSG00000058799 YIPF1 329315 sc-eQTL 1.35e-01 0.305 0.203 0.051 CD8_TCM L2
ENSG00000058804 NDC1 380650 sc-eQTL 2.37e-01 -0.225 0.189 0.051 CD8_TCM L2
ENSG00000081870 HSPB11 273184 sc-eQTL 6.10e-01 -0.0898 0.176 0.051 CD8_TCM L2
ENSG00000116205 TCEANC2 165529 sc-eQTL 5.95e-01 -0.102 0.192 0.051 CD8_TCM L2
ENSG00000116209 TMEM59 165609 sc-eQTL 1.46e-01 0.245 0.168 0.051 CD8_TCM L2
ENSG00000116212 LRRC42 273028 sc-eQTL 2.86e-01 -0.214 0.2 0.051 CD8_TCM L2
ENSG00000116221 MRPL37 35072 sc-eQTL 6.15e-01 0.0967 0.192 0.051 CD8_TCM L2
ENSG00000157193 LRP8 890644 sc-eQTL 5.17e-01 -0.115 0.178 0.051 CD8_TCM L2
ENSG00000157216 SSBP3 -194366 sc-eQTL 2.63e-02 0.368 0.164 0.051 CD8_TCM L2
ENSG00000162384 CZIB 998479 sc-eQTL 7.03e-02 0.343 0.189 0.051 CD8_TCM L2
ENSG00000162385 MAGOH 980595 sc-eQTL 6.32e-01 -0.0862 0.18 0.051 CD8_TCM L2
ENSG00000162402 USP24 -996251 sc-eQTL 9.20e-01 -0.0162 0.161 0.051 CD8_TCM L2
ENSG00000243725 TTC4 -496748 sc-eQTL 1.94e-01 0.254 0.195 0.051 CD8_TCM L2
ENSG00000006555 TTC22 -582210 sc-eQTL 2.45e-01 0.211 0.181 0.05 CD8_TEM L2
ENSG00000058799 YIPF1 329315 sc-eQTL 2.25e-01 -0.236 0.194 0.05 CD8_TEM L2
ENSG00000058804 NDC1 380650 sc-eQTL 6.35e-01 0.0879 0.185 0.05 CD8_TEM L2
ENSG00000081870 HSPB11 273184 sc-eQTL 8.66e-01 0.0298 0.175 0.05 CD8_TEM L2
ENSG00000116205 TCEANC2 165529 sc-eQTL 8.91e-01 -0.0261 0.189 0.05 CD8_TEM L2
ENSG00000116209 TMEM59 165609 sc-eQTL 3.96e-01 0.156 0.183 0.05 CD8_TEM L2
ENSG00000116212 LRRC42 273028 sc-eQTL 5.92e-01 -0.106 0.197 0.05 CD8_TEM L2
ENSG00000116221 MRPL37 35072 sc-eQTL 7.47e-01 -0.0601 0.186 0.05 CD8_TEM L2
ENSG00000157193 LRP8 890644 sc-eQTL 7.09e-01 -0.0691 0.185 0.05 CD8_TEM L2
ENSG00000157216 SSBP3 -194366 sc-eQTL 6.37e-01 -0.0829 0.176 0.05 CD8_TEM L2
ENSG00000162384 CZIB 998479 sc-eQTL 2.71e-02 -0.434 0.195 0.05 CD8_TEM L2
ENSG00000162385 MAGOH 980595 sc-eQTL 5.22e-01 0.107 0.167 0.05 CD8_TEM L2
ENSG00000162402 USP24 -996251 sc-eQTL 7.15e-01 -0.0678 0.185 0.05 CD8_TEM L2
ENSG00000243725 TTC4 -496748 sc-eQTL 9.58e-01 -0.00997 0.188 0.05 CD8_TEM L2
ENSG00000006555 TTC22 -582210 sc-eQTL 2.28e-01 -0.232 0.192 0.056 PB L2
ENSG00000058799 YIPF1 329315 sc-eQTL 9.19e-01 -0.0138 0.136 0.056 PB L2
ENSG00000058804 NDC1 380650 sc-eQTL 2.60e-01 -0.227 0.201 0.056 PB L2
ENSG00000081870 HSPB11 273184 sc-eQTL 7.69e-01 0.0502 0.17 0.056 PB L2
ENSG00000116133 DHCR24 -668082 sc-eQTL 2.23e-01 0.209 0.17 0.056 PB L2
ENSG00000116205 TCEANC2 165529 sc-eQTL 1.41e-01 0.306 0.206 0.056 PB L2
ENSG00000116209 TMEM59 165609 sc-eQTL 3.60e-01 -0.0797 0.0868 0.056 PB L2
ENSG00000116212 LRRC42 273028 sc-eQTL 3.78e-03 0.56 0.189 0.056 PB L2
ENSG00000116221 MRPL37 35072 sc-eQTL 6.92e-03 -0.422 0.153 0.056 PB L2
ENSG00000157193 LRP8 890644 sc-eQTL 4.51e-01 0.15 0.199 0.056 PB L2
ENSG00000157216 SSBP3 -194366 sc-eQTL 9.09e-01 -0.021 0.183 0.056 PB L2
ENSG00000162384 CZIB 998479 sc-eQTL 6.55e-01 -0.093 0.208 0.056 PB L2
ENSG00000162385 MAGOH 980595 sc-eQTL 1.96e-01 0.248 0.191 0.056 PB L2
ENSG00000162402 USP24 -996251 sc-eQTL 1.65e-01 -0.288 0.206 0.056 PB L2
ENSG00000215883 CYB5RL 19077 sc-eQTL 9.12e-01 -0.0237 0.215 0.056 PB L2
ENSG00000230138 LINC02812 850868 sc-eQTL 8.63e-01 -0.0267 0.155 0.056 PB L2
ENSG00000243725 TTC4 -496748 sc-eQTL 4.01e-01 -0.169 0.2 0.056 PB L2
ENSG00000006555 TTC22 -582210 sc-eQTL 3.91e-01 -0.147 0.171 0.05 Pro_T L2
ENSG00000058799 YIPF1 329315 sc-eQTL 3.99e-01 0.137 0.162 0.05 Pro_T L2
ENSG00000058804 NDC1 380650 sc-eQTL 1.72e-01 -0.175 0.128 0.05 Pro_T L2
ENSG00000081870 HSPB11 273184 sc-eQTL 3.91e-01 -0.0991 0.115 0.05 Pro_T L2
ENSG00000116133 DHCR24 -668082 sc-eQTL 4.46e-01 0.111 0.145 0.05 Pro_T L2
ENSG00000116205 TCEANC2 165529 sc-eQTL 2.57e-01 0.201 0.177 0.05 Pro_T L2
ENSG00000116209 TMEM59 165609 sc-eQTL 9.91e-01 0.00144 0.123 0.05 Pro_T L2
ENSG00000116212 LRRC42 273028 sc-eQTL 3.47e-01 -0.149 0.158 0.05 Pro_T L2
ENSG00000116221 MRPL37 35072 sc-eQTL 8.91e-02 -0.205 0.12 0.05 Pro_T L2
ENSG00000157193 LRP8 890644 sc-eQTL 3.02e-01 0.171 0.165 0.05 Pro_T L2
ENSG00000157216 SSBP3 -194366 sc-eQTL 8.96e-01 -0.0177 0.135 0.05 Pro_T L2
ENSG00000162384 CZIB 998479 sc-eQTL 6.43e-01 -0.0867 0.187 0.05 Pro_T L2
ENSG00000162385 MAGOH 980595 sc-eQTL 4.23e-02 -0.306 0.15 0.05 Pro_T L2
ENSG00000162402 USP24 -996251 sc-eQTL 3.22e-01 0.164 0.165 0.05 Pro_T L2
ENSG00000215883 CYB5RL 19077 sc-eQTL 2.96e-01 0.17 0.163 0.05 Pro_T L2
ENSG00000243725 TTC4 -496748 sc-eQTL 8.72e-01 0.0292 0.181 0.05 Pro_T L2
ENSG00000058799 YIPF1 329315 sc-eQTL 4.06e-01 -0.156 0.188 0.051 cDC L2
ENSG00000058804 NDC1 380650 sc-eQTL 3.89e-01 0.164 0.19 0.051 cDC L2
ENSG00000081870 HSPB11 273184 sc-eQTL 9.73e-01 -0.00685 0.201 0.051 cDC L2
ENSG00000116133 DHCR24 -668082 sc-eQTL 6.50e-01 -0.0708 0.156 0.051 cDC L2
ENSG00000116205 TCEANC2 165529 sc-eQTL 3.47e-01 -0.173 0.183 0.051 cDC L2
ENSG00000116209 TMEM59 165609 sc-eQTL 7.19e-01 -0.0563 0.156 0.051 cDC L2
ENSG00000116212 LRRC42 273028 sc-eQTL 9.02e-01 -0.0234 0.191 0.051 cDC L2
ENSG00000116221 MRPL37 35072 sc-eQTL 9.78e-01 -0.00558 0.2 0.051 cDC L2
ENSG00000157193 LRP8 890644 sc-eQTL 2.59e-01 -0.224 0.198 0.051 cDC L2
ENSG00000157216 SSBP3 -194366 sc-eQTL 5.42e-01 0.112 0.184 0.051 cDC L2
ENSG00000162384 CZIB 998479 sc-eQTL 1.60e-01 0.255 0.18 0.051 cDC L2
ENSG00000162385 MAGOH 980595 sc-eQTL 5.12e-01 0.109 0.166 0.051 cDC L2
ENSG00000162390 ACOT11 -323144 sc-eQTL 1.37e-01 0.254 0.17 0.051 cDC L2
ENSG00000162402 USP24 -996251 sc-eQTL 3.69e-01 0.173 0.192 0.051 cDC L2
ENSG00000215883 CYB5RL 19077 sc-eQTL 1.92e-01 -0.215 0.164 0.051 cDC L2
ENSG00000230138 LINC02812 850868 sc-eQTL 3.63e-01 -0.155 0.17 0.051 cDC L2
ENSG00000243725 TTC4 -496748 sc-eQTL 2.16e-02 -0.45 0.194 0.051 cDC L2
ENSG00000058799 YIPF1 329315 sc-eQTL 3.52e-01 -0.18 0.193 0.052 ncMono L2
ENSG00000058804 NDC1 380650 sc-eQTL 7.49e-01 -0.0613 0.191 0.052 ncMono L2
ENSG00000081870 HSPB11 273184 sc-eQTL 7.72e-01 0.0589 0.203 0.052 ncMono L2
ENSG00000116133 DHCR24 -668082 sc-eQTL 4.39e-01 0.113 0.146 0.052 ncMono L2
ENSG00000116205 TCEANC2 165529 sc-eQTL 5.51e-01 0.109 0.182 0.052 ncMono L2
ENSG00000116209 TMEM59 165609 sc-eQTL 3.60e-01 0.134 0.146 0.052 ncMono L2
ENSG00000116212 LRRC42 273028 sc-eQTL 8.26e-01 0.0438 0.199 0.052 ncMono L2
ENSG00000116221 MRPL37 35072 sc-eQTL 8.28e-01 -0.0409 0.188 0.052 ncMono L2
ENSG00000157193 LRP8 890644 sc-eQTL 7.70e-01 0.0602 0.205 0.052 ncMono L2
ENSG00000157216 SSBP3 -194366 sc-eQTL 9.99e-02 -0.338 0.204 0.052 ncMono L2
ENSG00000162384 CZIB 998479 sc-eQTL 1.77e-01 0.268 0.197 0.052 ncMono L2
ENSG00000162385 MAGOH 980595 sc-eQTL 5.99e-01 -0.0902 0.172 0.052 ncMono L2
ENSG00000162402 USP24 -996251 sc-eQTL 2.40e-01 0.193 0.164 0.052 ncMono L2
ENSG00000243725 TTC4 -496748 sc-eQTL 8.92e-01 0.0264 0.195 0.052 ncMono L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000116221 MRPL37 35072 eQTL 6.61e-08 -0.128 0.0236 0.0 0.0 0.0746
ENSG00000157193 LRP8 891043 eQTL 0.017 0.0923 0.0386 0.0 0.0 0.0746
ENSG00000157216 SSBP3 -194366 eQTL 1.26e-07 -0.134 0.0251 0.0246 0.023 0.0746
ENSG00000162390 ACOT11 -323144 eQTL 0.0451 0.0853 0.0425 0.0 0.0 0.0746
ENSG00000285954 AC119428.3 875082 eQTL 0.00949 -0.17 0.0653 0.00251 0.0 0.0746

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000116133 \N -668082 5.59e-07 5.33e-07 1.05e-07 3.58e-07 1.05e-07 1.28e-07 4.05e-07 8.11e-08 2.26e-07 1.15e-07 3.25e-07 2.11e-07 4.34e-07 1.1e-07 2.57e-07 1.49e-07 9.53e-08 3.3e-07 1.55e-07 1.65e-07 1.35e-07 2.7e-07 2.56e-07 1.15e-07 4.67e-07 1.86e-07 2.43e-07 2.57e-07 1.6e-07 1.8e-07 1.76e-07 3.31e-08 5.73e-08 1.36e-07 3.05e-07 5.41e-08 1.44e-07 6.98e-08 5.4e-08 2.56e-08 2.84e-08 2e-07 5.58e-08 1.3e-07 8.68e-08 1.44e-08 7.89e-08 1.22e-08 4.83e-08
ENSG00000116221 MRPL37 35072 2.62e-05 2.7e-05 4.42e-06 1.29e-05 4.08e-06 1.13e-05 3.41e-05 3.72e-06 2.17e-05 1.1e-05 2.93e-05 1.35e-05 3.59e-05 1.06e-05 5.97e-06 1.33e-05 1.27e-05 2.03e-05 6e-06 5.37e-06 1.12e-05 2.31e-05 2.49e-05 6.81e-06 3.36e-05 6.84e-06 1.02e-05 9.74e-06 2.52e-05 1.93e-05 1.46e-05 1.61e-06 2.23e-06 6.01e-06 9.27e-06 4.54e-06 2.65e-06 2.96e-06 3.81e-06 2.6e-06 1.7e-06 2.6e-05 2.99e-06 3.33e-07 2.04e-06 2.97e-06 3.49e-06 1.46e-06 1.36e-06
ENSG00000157216 SSBP3 -194366 4.81e-06 7.73e-06 7.1e-07 3.45e-06 1.35e-06 1.74e-06 5.25e-06 9.98e-07 5.13e-06 2.22e-06 5.75e-06 3.27e-06 7.1e-06 2.09e-06 1.02e-06 3.74e-06 1.9e-06 3.79e-06 1.41e-06 1.25e-06 2.98e-06 4.95e-06 4.58e-06 1.48e-06 7.87e-06 1.98e-06 2.23e-06 1.8e-06 4.44e-06 3.94e-06 2.83e-06 4.74e-07 5.74e-07 1.64e-06 1.99e-06 1.06e-06 1.07e-06 4.07e-07 9.31e-07 4.73e-07 4.94e-07 5.19e-06 7.84e-07 1.88e-07 4.86e-07 1.08e-06 1.08e-06 6.35e-07 3.26e-07
ENSG00000184313 \N -422641 1.32e-06 1.33e-06 2.24e-07 1.14e-06 2.71e-07 4.63e-07 1.45e-06 3.46e-07 1.2e-06 3.64e-07 1.39e-06 6.36e-07 1.96e-06 2.92e-07 4.96e-07 8.22e-07 8.37e-07 6.94e-07 7.25e-07 5.08e-07 3.91e-07 1.33e-06 9.22e-07 6.57e-07 2.29e-06 3.71e-07 9.29e-07 9.25e-07 1.11e-06 1.01e-06 5.45e-07 2.81e-07 1.88e-07 6.68e-07 5.46e-07 4.66e-07 7.71e-07 1.51e-07 2.9e-07 3.1e-07 3.03e-07 1.22e-06 3.9e-07 1.57e-07 1.73e-07 2.3e-07 2.18e-07 1.16e-07 4.96e-08
ENSG00000198711 \N -17327 3.49e-05 3.22e-05 6.15e-06 1.54e-05 5.76e-06 1.39e-05 4.4e-05 4.35e-06 2.98e-05 1.49e-05 3.73e-05 1.74e-05 4.54e-05 1.36e-05 6.95e-06 1.84e-05 1.7e-05 2.48e-05 7.51e-06 6.6e-06 1.49e-05 3.17e-05 3.15e-05 8.69e-06 4.3e-05 8.09e-06 1.39e-05 1.28e-05 3.14e-05 2.45e-05 1.95e-05 1.64e-06 2.6e-06 7.05e-06 1.12e-05 5.77e-06 3.17e-06 3.11e-06 4.65e-06 3.2e-06 1.76e-06 3.56e-05 3.64e-06 3.62e-07 2.48e-06 3.75e-06 4.09e-06 1.57e-06 1.52e-06
ENSG00000215883 \N 19077 3.39e-05 3.18e-05 5.99e-06 1.51e-05 5.71e-06 1.37e-05 4.33e-05 4.28e-06 2.93e-05 1.45e-05 3.66e-05 1.7e-05 4.46e-05 1.35e-05 6.78e-06 1.79e-05 1.63e-05 2.44e-05 7.47e-06 6.57e-06 1.43e-05 3.06e-05 3.09e-05 8.57e-06 4.2e-05 7.99e-06 1.33e-05 1.24e-05 3.09e-05 2.4e-05 1.87e-05 1.61e-06 2.59e-06 7.02e-06 1.11e-05 5.68e-06 3.1e-06 3.18e-06 4.58e-06 3.15e-06 1.74e-06 3.51e-05 3.55e-06 3.55e-07 2.49e-06 3.66e-06 4.09e-06 1.61e-06 1.53e-06