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Genes within 1Mb (chr1:54272163:A:G):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000006555 TTC22 -529160 sc-eQTL 1.75e-01 -0.242 0.177 0.05 CD4_CTL L2
ENSG00000058799 YIPF1 382365 sc-eQTL 4.59e-01 -0.14 0.189 0.05 CD4_CTL L2
ENSG00000058804 NDC1 433700 sc-eQTL 5.37e-01 0.115 0.186 0.05 CD4_CTL L2
ENSG00000081870 HSPB11 326234 sc-eQTL 4.92e-01 0.134 0.194 0.05 CD4_CTL L2
ENSG00000116205 TCEANC2 218579 sc-eQTL 2.20e-01 0.225 0.183 0.05 CD4_CTL L2
ENSG00000116209 TMEM59 218659 sc-eQTL 8.34e-01 -0.035 0.167 0.05 CD4_CTL L2
ENSG00000116212 LRRC42 326078 sc-eQTL 9.19e-01 -0.0188 0.185 0.05 CD4_CTL L2
ENSG00000116221 MRPL37 88122 sc-eQTL 8.36e-01 0.0425 0.205 0.05 CD4_CTL L2
ENSG00000157193 LRP8 943694 sc-eQTL 8.71e-01 -0.0309 0.191 0.05 CD4_CTL L2
ENSG00000157216 SSBP3 -141316 sc-eQTL 4.98e-01 0.0855 0.126 0.05 CD4_CTL L2
ENSG00000162402 USP24 -943201 sc-eQTL 4.08e-01 0.144 0.173 0.05 CD4_CTL L2
ENSG00000243725 TTC4 -443698 sc-eQTL 9.73e-01 0.00646 0.194 0.05 CD4_CTL L2
ENSG00000006555 TTC22 -529160 sc-eQTL 2.88e-01 0.202 0.19 0.051 CD8_TCM L2
ENSG00000058799 YIPF1 382365 sc-eQTL 5.61e-01 0.118 0.203 0.051 CD8_TCM L2
ENSG00000058804 NDC1 433700 sc-eQTL 5.99e-01 -0.0996 0.189 0.051 CD8_TCM L2
ENSG00000081870 HSPB11 326234 sc-eQTL 6.94e-01 0.069 0.175 0.051 CD8_TCM L2
ENSG00000116205 TCEANC2 218579 sc-eQTL 5.07e-01 0.127 0.191 0.051 CD8_TCM L2
ENSG00000116209 TMEM59 218659 sc-eQTL 9.42e-01 -0.0123 0.168 0.051 CD8_TCM L2
ENSG00000116212 LRRC42 326078 sc-eQTL 1.00e+00 -8.6e-06 0.2 0.051 CD8_TCM L2
ENSG00000116221 MRPL37 88122 sc-eQTL 5.89e-03 -0.522 0.187 0.051 CD8_TCM L2
ENSG00000157193 LRP8 943694 sc-eQTL 2.28e-01 0.214 0.177 0.051 CD8_TCM L2
ENSG00000157216 SSBP3 -141316 sc-eQTL 4.19e-01 0.134 0.165 0.051 CD8_TCM L2
ENSG00000162402 USP24 -943201 sc-eQTL 8.16e-01 -0.0373 0.161 0.051 CD8_TCM L2
ENSG00000243725 TTC4 -443698 sc-eQTL 2.65e-02 -0.431 0.193 0.051 CD8_TCM L2
ENSG00000006555 TTC22 -529160 sc-eQTL 3.94e-01 0.159 0.186 0.05 CD8_TEM L2
ENSG00000058799 YIPF1 382365 sc-eQTL 9.27e-01 -0.0182 0.199 0.05 CD8_TEM L2
ENSG00000058804 NDC1 433700 sc-eQTL 1.58e-02 -0.455 0.187 0.05 CD8_TEM L2
ENSG00000081870 HSPB11 326234 sc-eQTL 8.78e-01 0.0277 0.18 0.05 CD8_TEM L2
ENSG00000116205 TCEANC2 218579 sc-eQTL 7.99e-01 0.0494 0.194 0.05 CD8_TEM L2
ENSG00000116209 TMEM59 218659 sc-eQTL 2.43e-01 0.219 0.187 0.05 CD8_TEM L2
ENSG00000116212 LRRC42 326078 sc-eQTL 4.17e-01 0.164 0.202 0.05 CD8_TEM L2
ENSG00000116221 MRPL37 88122 sc-eQTL 5.93e-02 -0.357 0.188 0.05 CD8_TEM L2
ENSG00000157193 LRP8 943694 sc-eQTL 8.31e-01 -0.0404 0.189 0.05 CD8_TEM L2
ENSG00000157216 SSBP3 -141316 sc-eQTL 6.97e-02 0.325 0.178 0.05 CD8_TEM L2
ENSG00000162402 USP24 -943201 sc-eQTL 5.45e-01 -0.115 0.189 0.05 CD8_TEM L2
ENSG00000243725 TTC4 -443698 sc-eQTL 9.64e-01 -0.00878 0.193 0.05 CD8_TEM L2
ENSG00000006555 TTC22 -529160 sc-eQTL 2.52e-01 -0.213 0.186 0.053 NK_HLA L2
ENSG00000058799 YIPF1 382365 sc-eQTL 6.32e-02 -0.354 0.189 0.053 NK_HLA L2
ENSG00000058804 NDC1 433700 sc-eQTL 9.48e-01 -0.0125 0.191 0.053 NK_HLA L2
ENSG00000081870 HSPB11 326234 sc-eQTL 4.36e-01 -0.141 0.181 0.053 NK_HLA L2
ENSG00000116133 DHCR24 -615032 sc-eQTL 5.28e-01 0.115 0.182 0.053 NK_HLA L2
ENSG00000116205 TCEANC2 218579 sc-eQTL 1.92e-01 -0.228 0.175 0.053 NK_HLA L2
ENSG00000116209 TMEM59 218659 sc-eQTL 6.52e-01 -0.0786 0.174 0.053 NK_HLA L2
ENSG00000116212 LRRC42 326078 sc-eQTL 6.75e-01 0.0792 0.189 0.053 NK_HLA L2
ENSG00000116221 MRPL37 88122 sc-eQTL 1.51e-01 -0.275 0.191 0.053 NK_HLA L2
ENSG00000157193 LRP8 943694 sc-eQTL 6.98e-01 -0.07 0.18 0.053 NK_HLA L2
ENSG00000157216 SSBP3 -141316 sc-eQTL 6.72e-03 -0.421 0.154 0.053 NK_HLA L2
ENSG00000162398 LEXM -533900 sc-eQTL 6.15e-01 0.0888 0.177 0.053 NK_HLA L2
ENSG00000162402 USP24 -943201 sc-eQTL 7.30e-01 0.0448 0.13 0.053 NK_HLA L2
ENSG00000243725 TTC4 -443698 sc-eQTL 7.63e-01 0.0584 0.194 0.053 NK_HLA L2
ENSG00000006555 TTC22 -529160 sc-eQTL 9.49e-01 0.0102 0.159 0.064 gdT L2
ENSG00000058799 YIPF1 382365 sc-eQTL 7.85e-01 -0.0539 0.198 0.064 gdT L2
ENSG00000058804 NDC1 433700 sc-eQTL 4.83e-01 -0.136 0.193 0.064 gdT L2
ENSG00000081870 HSPB11 326234 sc-eQTL 4.41e-01 0.17 0.22 0.064 gdT L2
ENSG00000116133 DHCR24 -615032 sc-eQTL 6.77e-01 0.0737 0.177 0.064 gdT L2
ENSG00000116205 TCEANC2 218579 sc-eQTL 2.57e-01 0.201 0.177 0.064 gdT L2
ENSG00000116209 TMEM59 218659 sc-eQTL 2.45e-02 -0.402 0.177 0.064 gdT L2
ENSG00000116212 LRRC42 326078 sc-eQTL 9.54e-01 -0.0123 0.212 0.064 gdT L2
ENSG00000116221 MRPL37 88122 sc-eQTL 3.26e-01 -0.203 0.206 0.064 gdT L2
ENSG00000157193 LRP8 943694 sc-eQTL 4.17e-01 -0.166 0.204 0.064 gdT L2
ENSG00000157216 SSBP3 -141316 sc-eQTL 1.06e-01 -0.204 0.125 0.064 gdT L2
ENSG00000162402 USP24 -943201 sc-eQTL 4.92e-01 -0.117 0.17 0.064 gdT L2
ENSG00000215883 CYB5RL 72127 sc-eQTL 2.66e-01 -0.197 0.176 0.064 gdT L2
ENSG00000243725 TTC4 -443698 sc-eQTL 6.83e-01 0.0815 0.199 0.064 gdT L2
ENSG00000058799 YIPF1 382365 sc-eQTL 3.98e-02 -0.395 0.191 0.051 intMono L2
ENSG00000058804 NDC1 433700 sc-eQTL 2.71e-01 0.217 0.197 0.051 intMono L2
ENSG00000081870 HSPB11 326234 sc-eQTL 6.31e-01 0.0907 0.188 0.051 intMono L2
ENSG00000116133 DHCR24 -615032 sc-eQTL 6.27e-01 0.0702 0.144 0.051 intMono L2
ENSG00000116205 TCEANC2 218579 sc-eQTL 5.73e-01 0.101 0.179 0.051 intMono L2
ENSG00000116209 TMEM59 218659 sc-eQTL 3.95e-01 -0.112 0.132 0.051 intMono L2
ENSG00000116212 LRRC42 326078 sc-eQTL 1.58e-01 0.292 0.206 0.051 intMono L2
ENSG00000116221 MRPL37 88122 sc-eQTL 7.20e-03 -0.538 0.198 0.051 intMono L2
ENSG00000157193 LRP8 943694 sc-eQTL 9.12e-02 0.32 0.188 0.051 intMono L2
ENSG00000157216 SSBP3 -141316 sc-eQTL 5.56e-01 0.121 0.206 0.051 intMono L2
ENSG00000162402 USP24 -943201 sc-eQTL 7.50e-01 -0.0587 0.184 0.051 intMono L2
ENSG00000243725 TTC4 -443698 sc-eQTL 9.12e-01 -0.0216 0.196 0.051 intMono L2
ENSG00000058799 YIPF1 382365 sc-eQTL 1.42e-01 -0.306 0.207 0.056 pDC L2
ENSG00000058804 NDC1 433700 sc-eQTL 6.64e-01 0.0905 0.208 0.056 pDC L2
ENSG00000081870 HSPB11 326234 sc-eQTL 3.38e-02 -0.386 0.18 0.056 pDC L2
ENSG00000116133 DHCR24 -615032 sc-eQTL 1.43e-01 -0.246 0.167 0.056 pDC L2
ENSG00000116205 TCEANC2 218579 sc-eQTL 1.38e-01 -0.299 0.2 0.056 pDC L2
ENSG00000116209 TMEM59 218659 sc-eQTL 9.01e-01 0.0201 0.161 0.056 pDC L2
ENSG00000116212 LRRC42 326078 sc-eQTL 2.36e-01 0.238 0.2 0.056 pDC L2
ENSG00000116221 MRPL37 88122 sc-eQTL 1.20e-01 -0.332 0.212 0.056 pDC L2
ENSG00000157193 LRP8 943694 sc-eQTL 1.41e-01 0.262 0.177 0.056 pDC L2
ENSG00000157216 SSBP3 -141316 sc-eQTL 1.75e-01 -0.258 0.189 0.056 pDC L2
ENSG00000162390 ACOT11 -270094 sc-eQTL 3.40e-01 -0.0763 0.0797 0.056 pDC L2
ENSG00000162402 USP24 -943201 sc-eQTL 1.50e-01 -0.194 0.134 0.056 pDC L2
ENSG00000215883 CYB5RL 72127 sc-eQTL 7.94e-01 -0.0482 0.184 0.056 pDC L2
ENSG00000230138 LINC02812 903918 sc-eQTL 7.36e-01 -0.0485 0.144 0.056 pDC L2
ENSG00000243725 TTC4 -443698 sc-eQTL 5.00e-01 -0.144 0.213 0.056 pDC L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000006555 TTC22 -529160 eQTL 0.00291 0.105 0.0352 0.00427 0.0 0.0476
ENSG00000215883 CYB5RL 72127 eQTL 0.00369 0.129 0.0443 0.0 0.0 0.0476

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000184313 \N -369591 1.26e-06 1.53e-06 1.76e-07 1.18e-06 1.1e-07 4.92e-07 1.02e-06 1.31e-07 1.16e-06 2.98e-07 1.38e-06 8.67e-07 1.49e-06 2.55e-07 4.4e-07 4.84e-07 7.43e-07 4.72e-07 2.56e-07 7.84e-08 2.57e-07 1.01e-06 4.2e-07 1.19e-07 1.54e-06 3.87e-07 6.13e-07 2.63e-07 4.88e-07 9.2e-07 4.55e-07 3.26e-08 4.76e-08 2.17e-07 4.22e-07 5.23e-08 9.77e-08 6.2e-08 7.56e-08 8.72e-09 5.24e-08 1.05e-06 4.71e-08 5.27e-07 5.32e-08 3.54e-08 1.08e-07 2.2e-09 4.79e-08