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Genes within 1Mb (chr1:55654846:C:T):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000006555 TTC22 853523 sc-eQTL 8.76e-01 0.015 0.0962 0.261 B L1
ENSG00000116133 DHCR24 767651 sc-eQTL 2.37e-01 0.108 0.0907 0.261 B L1
ENSG00000162402 USP24 439482 sc-eQTL 8.16e-01 -0.0129 0.0555 0.261 B L1
ENSG00000162407 PLPP3 -990455 sc-eQTL 7.39e-01 -0.0315 0.0943 0.261 B L1
ENSG00000243725 TTC4 938985 sc-eQTL 8.26e-01 -0.0205 0.093 0.261 B L1
ENSG00000006555 TTC22 853523 sc-eQTL 3.34e-02 0.16 0.0746 0.261 CD4T L1
ENSG00000162402 USP24 439482 sc-eQTL 9.91e-01 -0.000573 0.0537 0.261 CD4T L1
ENSG00000243725 TTC4 938985 sc-eQTL 8.22e-01 0.0182 0.0809 0.261 CD4T L1
ENSG00000006555 TTC22 853523 sc-eQTL 2.57e-01 -0.0741 0.0652 0.261 CD8T L1
ENSG00000162402 USP24 439482 sc-eQTL 4.01e-01 -0.0455 0.054 0.261 CD8T L1
ENSG00000243725 TTC4 938985 sc-eQTL 7.73e-01 -0.0271 0.0939 0.261 CD8T L1
ENSG00000116133 DHCR24 767651 sc-eQTL 1.82e-02 0.201 0.0845 0.266 DC L1
ENSG00000162402 USP24 439482 sc-eQTL 1.15e-01 -0.0826 0.0521 0.266 DC L1
ENSG00000243725 TTC4 938985 sc-eQTL 5.77e-01 -0.0569 0.102 0.266 DC L1
ENSG00000116133 DHCR24 767651 sc-eQTL 8.17e-01 -0.0143 0.062 0.261 Mono L1
ENSG00000162402 USP24 439482 sc-eQTL 1.98e-01 -0.073 0.0565 0.261 Mono L1
ENSG00000243725 TTC4 938985 sc-eQTL 9.39e-01 -0.00767 0.0998 0.261 Mono L1
ENSG00000006555 TTC22 853523 sc-eQTL 6.92e-01 0.0344 0.0868 0.262 NK L1
ENSG00000116133 DHCR24 767651 sc-eQTL 1.01e-01 0.144 0.0871 0.262 NK L1
ENSG00000162398 LEXM 848783 sc-eQTL 3.57e-02 0.171 0.0811 0.262 NK L1
ENSG00000162402 USP24 439482 sc-eQTL 4.93e-03 -0.139 0.0488 0.262 NK L1
ENSG00000243725 TTC4 938985 sc-eQTL 3.10e-01 -0.0953 0.0937 0.262 NK L1
ENSG00000006555 TTC22 853523 sc-eQTL 8.16e-02 -0.133 0.0758 0.261 Other_T L1
ENSG00000116133 DHCR24 767651 sc-eQTL 1.69e-02 0.141 0.0584 0.261 Other_T L1
ENSG00000162402 USP24 439482 sc-eQTL 5.01e-01 -0.0472 0.0701 0.261 Other_T L1
ENSG00000243725 TTC4 938985 sc-eQTL 3.60e-01 -0.0875 0.0953 0.261 Other_T L1
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000006555 TTC22 853523 sc-eQTL 2.69e-01 -0.0881 0.0794 0.258 B_Activated L2
ENSG00000116133 DHCR24 767651 sc-eQTL 2.47e-02 -0.209 0.0923 0.258 B_Activated L2
ENSG00000162402 USP24 439482 sc-eQTL 7.60e-01 0.0311 0.102 0.258 B_Activated L2
ENSG00000162407 PLPP3 -990455 sc-eQTL 5.07e-01 0.0681 0.102 0.258 B_Activated L2
ENSG00000243725 TTC4 938985 sc-eQTL 3.17e-01 0.0976 0.0973 0.258 B_Activated L2
ENSG00000006555 TTC22 853523 sc-eQTL 4.83e-02 0.2 0.101 0.26 B_Intermediate L2
ENSG00000116133 DHCR24 767651 sc-eQTL 7.88e-01 0.0253 0.0943 0.26 B_Intermediate L2
ENSG00000162402 USP24 439482 sc-eQTL 2.43e-01 -0.0868 0.0742 0.26 B_Intermediate L2
ENSG00000162407 PLPP3 -990455 sc-eQTL 5.34e-01 -0.0592 0.095 0.26 B_Intermediate L2
ENSG00000243725 TTC4 938985 sc-eQTL 9.12e-01 0.0106 0.0958 0.26 B_Intermediate L2
ENSG00000006555 TTC22 853523 sc-eQTL 3.05e-01 -0.0988 0.096 0.259 B_Memory L2
ENSG00000116133 DHCR24 767651 sc-eQTL 8.16e-01 -0.0223 0.0955 0.259 B_Memory L2
ENSG00000162402 USP24 439482 sc-eQTL 4.60e-01 0.0582 0.0787 0.259 B_Memory L2
ENSG00000162407 PLPP3 -990455 sc-eQTL 9.87e-01 0.00147 0.0878 0.259 B_Memory L2
ENSG00000243725 TTC4 938985 sc-eQTL 4.19e-01 0.0815 0.101 0.259 B_Memory L2
ENSG00000006555 TTC22 853523 sc-eQTL 3.93e-01 -0.0883 0.103 0.261 B_Naive1 L2
ENSG00000116133 DHCR24 767651 sc-eQTL 2.43e-01 0.113 0.0967 0.261 B_Naive1 L2
ENSG00000162402 USP24 439482 sc-eQTL 7.64e-01 -0.0209 0.0695 0.261 B_Naive1 L2
ENSG00000162407 PLPP3 -990455 sc-eQTL 5.24e-01 -0.0613 0.0959 0.261 B_Naive1 L2
ENSG00000243725 TTC4 938985 sc-eQTL 2.01e-01 -0.121 0.0943 0.261 B_Naive1 L2
ENSG00000006555 TTC22 853523 sc-eQTL 4.62e-01 -0.0749 0.102 0.26 B_Naive2 L2
ENSG00000116133 DHCR24 767651 sc-eQTL 1.49e-02 0.214 0.0873 0.26 B_Naive2 L2
ENSG00000162402 USP24 439482 sc-eQTL 9.09e-01 -0.00846 0.0743 0.26 B_Naive2 L2
ENSG00000162407 PLPP3 -990455 sc-eQTL 5.97e-01 -0.0462 0.0871 0.26 B_Naive2 L2
ENSG00000243725 TTC4 938985 sc-eQTL 5.86e-01 0.0593 0.109 0.26 B_Naive2 L2
ENSG00000006555 TTC22 853523 sc-eQTL 4.25e-01 -0.0759 0.0949 0.266 CD4_CTL L2
ENSG00000162402 USP24 439482 sc-eQTL 6.85e-02 -0.168 0.0917 0.266 CD4_CTL L2
ENSG00000243725 TTC4 938985 sc-eQTL 1.57e-02 0.248 0.102 0.266 CD4_CTL L2
ENSG00000006555 TTC22 853523 sc-eQTL 1.69e-02 0.21 0.087 0.261 CD4_Naive L2
ENSG00000162402 USP24 439482 sc-eQTL 6.31e-01 -0.0279 0.0579 0.261 CD4_Naive L2
ENSG00000243725 TTC4 938985 sc-eQTL 7.50e-01 -0.0282 0.0883 0.261 CD4_Naive L2
ENSG00000006555 TTC22 853523 sc-eQTL 4.69e-01 0.0669 0.0922 0.261 CD4_TCM L2
ENSG00000162402 USP24 439482 sc-eQTL 9.88e-01 0.00108 0.0693 0.261 CD4_TCM L2
ENSG00000243725 TTC4 938985 sc-eQTL 4.18e-01 0.0809 0.0996 0.261 CD4_TCM L2
ENSG00000006555 TTC22 853523 sc-eQTL 4.94e-01 0.0723 0.106 0.261 CD4_TEM L2
ENSG00000162402 USP24 439482 sc-eQTL 9.21e-01 0.00774 0.0779 0.261 CD4_TEM L2
ENSG00000243725 TTC4 938985 sc-eQTL 9.26e-01 -0.00963 0.103 0.261 CD4_TEM L2
ENSG00000006555 TTC22 853523 sc-eQTL 3.24e-01 -0.084 0.0849 0.261 CD8_CTL L2
ENSG00000162402 USP24 439482 sc-eQTL 7.02e-01 0.0253 0.066 0.261 CD8_CTL L2
ENSG00000243725 TTC4 938985 sc-eQTL 1.36e-01 -0.147 0.0983 0.261 CD8_CTL L2
ENSG00000006555 TTC22 853523 sc-eQTL 9.94e-01 -0.000675 0.0953 0.261 CD8_Naive L2
ENSG00000162402 USP24 439482 sc-eQTL 2.62e-01 -0.0781 0.0694 0.261 CD8_Naive L2
ENSG00000243725 TTC4 938985 sc-eQTL 7.01e-01 -0.0392 0.102 0.261 CD8_Naive L2
ENSG00000006555 TTC22 853523 sc-eQTL 5.95e-02 -0.191 0.101 0.264 CD8_TCM L2
ENSG00000162402 USP24 439482 sc-eQTL 5.39e-01 -0.0529 0.0859 0.264 CD8_TCM L2
ENSG00000243725 TTC4 938985 sc-eQTL 7.61e-01 -0.0319 0.105 0.264 CD8_TCM L2
ENSG00000006555 TTC22 853523 sc-eQTL 4.87e-01 -0.0688 0.0988 0.263 CD8_TEM L2
ENSG00000162402 USP24 439482 sc-eQTL 1.91e-01 -0.132 0.1 0.263 CD8_TEM L2
ENSG00000243725 TTC4 938985 sc-eQTL 8.14e-01 -0.0241 0.102 0.263 CD8_TEM L2
ENSG00000006555 TTC22 853523 sc-eQTL 8.54e-01 -0.0168 0.091 0.264 MAIT L2
ENSG00000116133 DHCR24 767651 sc-eQTL 5.83e-01 -0.037 0.0673 0.264 MAIT L2
ENSG00000162402 USP24 439482 sc-eQTL 8.85e-01 -0.0119 0.0819 0.264 MAIT L2
ENSG00000243725 TTC4 938985 sc-eQTL 3.33e-01 -0.0917 0.0944 0.264 MAIT L2
ENSG00000006555 TTC22 853523 sc-eQTL 3.57e-01 0.0959 0.104 0.264 NK_CD56bright L2
ENSG00000116133 DHCR24 767651 sc-eQTL 2.96e-01 0.0961 0.0916 0.264 NK_CD56bright L2
ENSG00000162398 LEXM 848783 sc-eQTL 8.26e-01 -0.0207 0.0941 0.264 NK_CD56bright L2
ENSG00000162402 USP24 439482 sc-eQTL 6.54e-02 -0.149 0.0803 0.264 NK_CD56bright L2
ENSG00000243725 TTC4 938985 sc-eQTL 1.54e-02 -0.246 0.101 0.264 NK_CD56bright L2
ENSG00000006555 TTC22 853523 sc-eQTL 6.78e-01 0.036 0.0866 0.261 NK_CD56dim L2
ENSG00000116133 DHCR24 767651 sc-eQTL 2.49e-02 0.202 0.0892 0.261 NK_CD56dim L2
ENSG00000162398 LEXM 848783 sc-eQTL 1.02e-02 0.227 0.0874 0.261 NK_CD56dim L2
ENSG00000162402 USP24 439482 sc-eQTL 5.88e-03 -0.154 0.0554 0.261 NK_CD56dim L2
ENSG00000243725 TTC4 938985 sc-eQTL 8.92e-01 0.0131 0.0966 0.261 NK_CD56dim L2
ENSG00000006555 TTC22 853523 sc-eQTL 3.50e-01 -0.0964 0.103 0.267 NK_HLA L2
ENSG00000116133 DHCR24 767651 sc-eQTL 2.79e-02 0.22 0.0993 0.267 NK_HLA L2
ENSG00000162398 LEXM 848783 sc-eQTL 1.45e-01 0.142 0.0971 0.267 NK_HLA L2
ENSG00000162402 USP24 439482 sc-eQTL 9.82e-01 0.00166 0.0717 0.267 NK_HLA L2
ENSG00000243725 TTC4 938985 sc-eQTL 4.06e-01 -0.0889 0.107 0.267 NK_HLA L2
ENSG00000006555 TTC22 853523 sc-eQTL 7.25e-01 -0.0328 0.0929 0.261 NK_cytokine L2
ENSG00000116133 DHCR24 767651 sc-eQTL 6.74e-01 0.0396 0.094 0.261 NK_cytokine L2
ENSG00000162398 LEXM 848783 sc-eQTL 8.76e-01 0.0153 0.098 0.261 NK_cytokine L2
ENSG00000162402 USP24 439482 sc-eQTL 9.99e-02 -0.11 0.0664 0.261 NK_cytokine L2
ENSG00000243725 TTC4 938985 sc-eQTL 6.44e-01 -0.0459 0.099 0.261 NK_cytokine L2
ENSG00000006555 TTC22 853523 sc-eQTL 5.37e-01 0.0768 0.124 0.263 PB L2
ENSG00000116133 DHCR24 767651 sc-eQTL 5.04e-01 0.0737 0.11 0.263 PB L2
ENSG00000162402 USP24 439482 sc-eQTL 2.83e-01 -0.143 0.133 0.263 PB L2
ENSG00000162407 PLPP3 -990455 sc-eQTL 2.51e-02 0.268 0.118 0.263 PB L2
ENSG00000243725 TTC4 938985 sc-eQTL 7.29e-01 -0.045 0.129 0.263 PB L2
ENSG00000006555 TTC22 853523 sc-eQTL 7.68e-01 -0.0279 0.0944 0.259 Pro_T L2
ENSG00000116133 DHCR24 767651 sc-eQTL 2.91e-02 0.174 0.0794 0.259 Pro_T L2
ENSG00000162402 USP24 439482 sc-eQTL 4.30e-01 -0.0719 0.091 0.259 Pro_T L2
ENSG00000243725 TTC4 938985 sc-eQTL 2.93e-01 0.105 0.0998 0.259 Pro_T L2
ENSG00000006555 TTC22 853523 sc-eQTL 2.84e-01 0.0993 0.0924 0.261 Treg L2
ENSG00000162402 USP24 439482 sc-eQTL 5.47e-01 0.0498 0.0825 0.261 Treg L2
ENSG00000243725 TTC4 938985 sc-eQTL 6.72e-01 -0.0441 0.104 0.261 Treg L2
ENSG00000116133 DHCR24 767651 sc-eQTL 3.08e-01 0.0838 0.082 0.273 cDC L2
ENSG00000162402 USP24 439482 sc-eQTL 1.42e-01 -0.148 0.101 0.273 cDC L2
ENSG00000243725 TTC4 938985 sc-eQTL 8.61e-01 -0.0182 0.104 0.273 cDC L2
ENSG00000116133 DHCR24 767651 sc-eQTL 3.75e-01 0.0535 0.0603 0.261 cMono_IL1B L2
ENSG00000162402 USP24 439482 sc-eQTL 1.78e-01 -0.092 0.068 0.261 cMono_IL1B L2
ENSG00000243725 TTC4 938985 sc-eQTL 9.97e-01 0.000333 0.104 0.261 cMono_IL1B L2
ENSG00000116133 DHCR24 767651 sc-eQTL 4.23e-01 -0.0453 0.0564 0.261 cMono_S100A L2
ENSG00000162402 USP24 439482 sc-eQTL 1.04e-01 0.136 0.0833 0.261 cMono_S100A L2
ENSG00000243725 TTC4 938985 sc-eQTL 5.86e-01 -0.0572 0.105 0.261 cMono_S100A L2
ENSG00000006555 TTC22 853523 sc-eQTL 2.44e-02 -0.205 0.0899 0.258 gdT L2
ENSG00000116133 DHCR24 767651 sc-eQTL 5.61e-01 -0.0593 0.102 0.258 gdT L2
ENSG00000162402 USP24 439482 sc-eQTL 1.82e-01 -0.131 0.0974 0.258 gdT L2
ENSG00000243725 TTC4 938985 sc-eQTL 1.47e-01 -0.166 0.114 0.258 gdT L2
ENSG00000116133 DHCR24 767651 sc-eQTL 3.72e-01 0.0677 0.0756 0.264 intMono L2
ENSG00000162402 USP24 439482 sc-eQTL 6.89e-01 -0.0387 0.0965 0.264 intMono L2
ENSG00000243725 TTC4 938985 sc-eQTL 1.98e-01 0.132 0.102 0.264 intMono L2
ENSG00000116133 DHCR24 767651 sc-eQTL 5.20e-01 -0.0487 0.0755 0.271 ncMono L2
ENSG00000162402 USP24 439482 sc-eQTL 2.36e-01 -0.101 0.085 0.271 ncMono L2
ENSG00000243725 TTC4 938985 sc-eQTL 5.69e-01 -0.0575 0.101 0.271 ncMono L2
ENSG00000116133 DHCR24 767651 sc-eQTL 2.60e-02 0.195 0.0868 0.277 pDC L2
ENSG00000162402 USP24 439482 sc-eQTL 1.96e-01 -0.0913 0.0704 0.277 pDC L2
ENSG00000243725 TTC4 938985 sc-eQTL 5.18e-01 -0.0723 0.112 0.277 pDC L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000006555 TTC22 853523 sc-eQTL 2.88e-01 0.103 0.0967 0.261 B_Memory LOneK1K
ENSG00000116133 DHCR24 767651 sc-eQTL 9.17e-01 0.0102 0.0974 0.261 B_Memory LOneK1K
ENSG00000162402 USP24 439482 sc-eQTL 7.30e-01 -0.024 0.0695 0.261 B_Memory LOneK1K
ENSG00000162407 PLPP3 -990455 sc-eQTL 8.94e-01 0.0116 0.0866 0.261 B_Memory LOneK1K
ENSG00000243725 TTC4 938985 sc-eQTL 5.29e-01 0.0605 0.0959 0.261 B_Memory LOneK1K
ENSG00000006555 TTC22 853523 sc-eQTL 2.19e-01 -0.127 0.103 0.261 B_Naive LOneK1K
ENSG00000116133 DHCR24 767651 sc-eQTL 2.81e-02 0.204 0.0921 0.261 B_Naive LOneK1K
ENSG00000162402 USP24 439482 sc-eQTL 6.50e-01 -0.0299 0.0659 0.261 B_Naive LOneK1K
ENSG00000162407 PLPP3 -990455 sc-eQTL 2.86e-01 -0.11 0.103 0.261 B_Naive LOneK1K
ENSG00000243725 TTC4 938985 sc-eQTL 3.61e-01 -0.0898 0.0981 0.261 B_Naive LOneK1K
ENSG00000116133 DHCR24 767651 sc-eQTL 8.78e-01 0.00894 0.0583 0.261 CD14_Mono LOneK1K
ENSG00000162402 USP24 439482 sc-eQTL 7.65e-01 -0.0191 0.0637 0.261 CD14_Mono LOneK1K
ENSG00000243725 TTC4 938985 sc-eQTL 9.88e-01 0.00166 0.106 0.261 CD14_Mono LOneK1K
ENSG00000116133 DHCR24 767651 sc-eQTL 8.41e-01 -0.0145 0.0721 0.263 CD16_Mono LOneK1K
ENSG00000162402 USP24 439482 sc-eQTL 9.48e-02 -0.135 0.0806 0.263 CD16_Mono LOneK1K
ENSG00000243725 TTC4 938985 sc-eQTL 6.14e-01 0.0514 0.102 0.263 CD16_Mono LOneK1K
ENSG00000006555 TTC22 853523 sc-eQTL 9.62e-01 0.00406 0.0849 0.261 NK_CD56dim LOneK1K
ENSG00000116133 DHCR24 767651 sc-eQTL 7.64e-02 0.157 0.088 0.261 NK_CD56dim LOneK1K
ENSG00000162398 LEXM 848783 sc-eQTL 3.69e-02 0.173 0.0824 0.261 NK_CD56dim LOneK1K
ENSG00000162402 USP24 439482 sc-eQTL 7.04e-03 -0.141 0.0519 0.261 NK_CD56dim LOneK1K
ENSG00000243725 TTC4 938985 sc-eQTL 8.72e-01 -0.0152 0.094 0.261 NK_CD56dim LOneK1K

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000162396 PARS2 890323 eQTL 0.0119 0.0744 0.0295 0.00197 0.0 0.268
ENSG00000162398 LEXM 848783 eQTL 0.00128 -0.0712 0.022 0.00261 0.0 0.268
ENSG00000234810 AL603840.1 325558 eQTL 0.187 0.0439 0.0333 0.00495 0.00129 0.268
ENSG00000243725 TTC4 938985 eQTL 0.0432 0.0381 0.0188 0.0 0.0 0.268

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000116133 \N 767651 3.21e-07 1.53e-07 5.72e-08 2.05e-07 1.03e-07 8.21e-08 1.81e-07 5.66e-08 1.5e-07 7.6e-08 1.59e-07 1.2e-07 1.95e-07 8e-08 5.36e-08 7.89e-08 4.18e-08 1.56e-07 6.92e-08 5.2e-08 1.25e-07 1.26e-07 1.58e-07 2.68e-08 1.85e-07 1.22e-07 1.12e-07 1.04e-07 1.26e-07 9.88e-08 1.06e-07 3.78e-08 3.43e-08 9.76e-08 3.12e-08 2.85e-08 5.74e-08 8.63e-08 6.43e-08 3.99e-08 5e-08 1.48e-07 5.08e-08 1.28e-08 3.29e-08 1.55e-08 1.15e-07 1.98e-09 4.81e-08