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Genes within 1Mb (chr1:55647101:C:T):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000006555 TTC22 845778 sc-eQTL 2.73e-01 -0.118 0.107 0.838 B L1
ENSG00000116133 DHCR24 759906 sc-eQTL 7.81e-01 0.0283 0.102 0.838 B L1
ENSG00000162402 USP24 431737 sc-eQTL 1.07e-01 0.0998 0.0617 0.838 B L1
ENSG00000162407 PLPP3 -998200 sc-eQTL 8.29e-01 0.0227 0.105 0.838 B L1
ENSG00000243725 TTC4 931240 sc-eQTL 3.06e-01 0.107 0.104 0.838 B L1
ENSG00000006555 TTC22 845778 sc-eQTL 2.33e-01 -0.101 0.0843 0.838 CD4T L1
ENSG00000162402 USP24 431737 sc-eQTL 4.78e-01 -0.0428 0.0602 0.838 CD4T L1
ENSG00000243725 TTC4 931240 sc-eQTL 8.40e-01 0.0183 0.0907 0.838 CD4T L1
ENSG00000006555 TTC22 845778 sc-eQTL 5.89e-01 0.0391 0.0722 0.838 CD8T L1
ENSG00000162402 USP24 431737 sc-eQTL 6.10e-01 0.0305 0.0598 0.838 CD8T L1
ENSG00000243725 TTC4 931240 sc-eQTL 8.22e-01 0.0233 0.104 0.838 CD8T L1
ENSG00000116133 DHCR24 759906 sc-eQTL 6.94e-02 0.174 0.0955 0.831 DC L1
ENSG00000162402 USP24 431737 sc-eQTL 4.82e-01 -0.0414 0.0589 0.831 DC L1
ENSG00000243725 TTC4 931240 sc-eQTL 4.13e-01 -0.0939 0.114 0.831 DC L1
ENSG00000116133 DHCR24 759906 sc-eQTL 3.73e-01 -0.0619 0.0694 0.838 Mono L1
ENSG00000162402 USP24 431737 sc-eQTL 8.25e-02 0.11 0.0632 0.838 Mono L1
ENSG00000243725 TTC4 931240 sc-eQTL 5.09e-01 0.074 0.112 0.838 Mono L1
ENSG00000006555 TTC22 845778 sc-eQTL 6.54e-01 0.0439 0.0978 0.837 NK L1
ENSG00000116133 DHCR24 759906 sc-eQTL 2.21e-02 -0.225 0.0975 0.837 NK L1
ENSG00000162398 LEXM 841038 sc-eQTL 2.71e-01 -0.102 0.0921 0.837 NK L1
ENSG00000162402 USP24 431737 sc-eQTL 6.92e-01 0.0222 0.056 0.837 NK L1
ENSG00000243725 TTC4 931240 sc-eQTL 1.69e-01 0.145 0.105 0.837 NK L1
ENSG00000006555 TTC22 845778 sc-eQTL 2.15e-01 -0.106 0.085 0.838 Other_T L1
ENSG00000116133 DHCR24 759906 sc-eQTL 2.61e-01 -0.0744 0.066 0.838 Other_T L1
ENSG00000162402 USP24 431737 sc-eQTL 4.64e-01 0.0575 0.0783 0.838 Other_T L1
ENSG00000243725 TTC4 931240 sc-eQTL 7.40e-01 -0.0355 0.107 0.838 Other_T L1
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000006555 TTC22 845778 sc-eQTL 5.73e-01 -0.0498 0.0882 0.827 B_Activated L2
ENSG00000116133 DHCR24 759906 sc-eQTL 5.07e-01 0.0688 0.104 0.827 B_Activated L2
ENSG00000162402 USP24 431737 sc-eQTL 8.46e-01 0.0219 0.113 0.827 B_Activated L2
ENSG00000162407 PLPP3 -998200 sc-eQTL 9.11e-01 0.0127 0.113 0.827 B_Activated L2
ENSG00000243725 TTC4 931240 sc-eQTL 9.24e-01 0.0103 0.108 0.827 B_Activated L2
ENSG00000006555 TTC22 845778 sc-eQTL 1.32e-01 -0.174 0.115 0.837 B_Intermediate L2
ENSG00000116133 DHCR24 759906 sc-eQTL 2.17e-01 -0.132 0.107 0.837 B_Intermediate L2
ENSG00000162402 USP24 431737 sc-eQTL 5.79e-02 0.16 0.084 0.837 B_Intermediate L2
ENSG00000162407 PLPP3 -998200 sc-eQTL 8.47e-01 0.0209 0.108 0.837 B_Intermediate L2
ENSG00000243725 TTC4 931240 sc-eQTL 1.40e-01 0.161 0.108 0.837 B_Intermediate L2
ENSG00000006555 TTC22 845778 sc-eQTL 4.59e-01 0.0814 0.11 0.838 B_Memory L2
ENSG00000116133 DHCR24 759906 sc-eQTL 7.72e-01 0.0316 0.109 0.838 B_Memory L2
ENSG00000162402 USP24 431737 sc-eQTL 8.55e-01 0.0165 0.0899 0.838 B_Memory L2
ENSG00000162407 PLPP3 -998200 sc-eQTL 6.59e-01 -0.0443 0.1 0.838 B_Memory L2
ENSG00000243725 TTC4 931240 sc-eQTL 4.47e-01 -0.0876 0.115 0.838 B_Memory L2
ENSG00000006555 TTC22 845778 sc-eQTL 9.47e-01 0.00755 0.113 0.838 B_Naive1 L2
ENSG00000116133 DHCR24 759906 sc-eQTL 5.61e-01 0.0618 0.106 0.838 B_Naive1 L2
ENSG00000162402 USP24 431737 sc-eQTL 1.07e-01 0.123 0.0758 0.838 B_Naive1 L2
ENSG00000162407 PLPP3 -998200 sc-eQTL 7.10e-01 -0.0393 0.105 0.838 B_Naive1 L2
ENSG00000243725 TTC4 931240 sc-eQTL 5.84e-02 0.196 0.103 0.838 B_Naive1 L2
ENSG00000006555 TTC22 845778 sc-eQTL 5.32e-01 -0.0714 0.114 0.839 B_Naive2 L2
ENSG00000116133 DHCR24 759906 sc-eQTL 5.71e-01 -0.0564 0.0994 0.839 B_Naive2 L2
ENSG00000162402 USP24 431737 sc-eQTL 9.70e-01 -0.0031 0.0835 0.839 B_Naive2 L2
ENSG00000162407 PLPP3 -998200 sc-eQTL 3.35e-01 -0.0944 0.0977 0.839 B_Naive2 L2
ENSG00000243725 TTC4 931240 sc-eQTL 9.38e-01 0.00945 0.122 0.839 B_Naive2 L2
ENSG00000006555 TTC22 845778 sc-eQTL 4.96e-01 -0.0747 0.11 0.834 CD4_CTL L2
ENSG00000162402 USP24 431737 sc-eQTL 8.24e-01 0.0238 0.107 0.834 CD4_CTL L2
ENSG00000243725 TTC4 931240 sc-eQTL 6.89e-01 -0.0478 0.119 0.834 CD4_CTL L2
ENSG00000006555 TTC22 845778 sc-eQTL 1.14e-01 -0.154 0.0972 0.838 CD4_Naive L2
ENSG00000162402 USP24 431737 sc-eQTL 9.50e-01 -0.00401 0.0642 0.838 CD4_Naive L2
ENSG00000243725 TTC4 931240 sc-eQTL 6.95e-01 0.0384 0.0979 0.838 CD4_Naive L2
ENSG00000006555 TTC22 845778 sc-eQTL 2.53e-01 -0.118 0.103 0.838 CD4_TCM L2
ENSG00000162402 USP24 431737 sc-eQTL 1.78e-01 -0.104 0.0771 0.838 CD4_TCM L2
ENSG00000243725 TTC4 931240 sc-eQTL 5.58e-01 0.0653 0.111 0.838 CD4_TCM L2
ENSG00000006555 TTC22 845778 sc-eQTL 6.01e-01 -0.0616 0.118 0.838 CD4_TEM L2
ENSG00000162402 USP24 431737 sc-eQTL 2.15e-01 0.108 0.0865 0.838 CD4_TEM L2
ENSG00000243725 TTC4 931240 sc-eQTL 1.71e-01 -0.157 0.114 0.838 CD4_TEM L2
ENSG00000006555 TTC22 845778 sc-eQTL 6.64e-01 -0.0414 0.0953 0.838 CD8_CTL L2
ENSG00000162402 USP24 431737 sc-eQTL 8.48e-01 0.0142 0.0739 0.838 CD8_CTL L2
ENSG00000243725 TTC4 931240 sc-eQTL 8.04e-01 -0.0274 0.111 0.838 CD8_CTL L2
ENSG00000006555 TTC22 845778 sc-eQTL 4.72e-01 0.0765 0.106 0.838 CD8_Naive L2
ENSG00000162402 USP24 431737 sc-eQTL 6.89e-01 0.0312 0.0777 0.838 CD8_Naive L2
ENSG00000243725 TTC4 931240 sc-eQTL 8.08e-01 -0.0276 0.114 0.838 CD8_Naive L2
ENSG00000006555 TTC22 845778 sc-eQTL 1.08e-01 0.194 0.12 0.84 CD8_TCM L2
ENSG00000162402 USP24 431737 sc-eQTL 7.66e-01 0.0305 0.102 0.84 CD8_TCM L2
ENSG00000243725 TTC4 931240 sc-eQTL 2.57e-02 0.276 0.123 0.84 CD8_TCM L2
ENSG00000006555 TTC22 845778 sc-eQTL 5.86e-01 -0.0613 0.112 0.838 CD8_TEM L2
ENSG00000162402 USP24 431737 sc-eQTL 5.93e-01 -0.0615 0.115 0.838 CD8_TEM L2
ENSG00000243725 TTC4 931240 sc-eQTL 6.51e-01 -0.0528 0.117 0.838 CD8_TEM L2
ENSG00000006555 TTC22 845778 sc-eQTL 3.16e-01 -0.103 0.102 0.838 MAIT L2
ENSG00000116133 DHCR24 759906 sc-eQTL 6.70e-01 -0.0324 0.0759 0.838 MAIT L2
ENSG00000162402 USP24 431737 sc-eQTL 8.67e-01 0.0155 0.0923 0.838 MAIT L2
ENSG00000243725 TTC4 931240 sc-eQTL 8.74e-01 -0.017 0.107 0.838 MAIT L2
ENSG00000006555 TTC22 845778 sc-eQTL 4.78e-02 -0.233 0.117 0.838 NK_CD56bright L2
ENSG00000116133 DHCR24 759906 sc-eQTL 5.19e-03 -0.289 0.102 0.838 NK_CD56bright L2
ENSG00000162398 LEXM 841038 sc-eQTL 7.94e-01 -0.0279 0.107 0.838 NK_CD56bright L2
ENSG00000162402 USP24 431737 sc-eQTL 9.68e-01 -0.00365 0.0919 0.838 NK_CD56bright L2
ENSG00000243725 TTC4 931240 sc-eQTL 8.93e-01 0.0156 0.116 0.838 NK_CD56bright L2
ENSG00000006555 TTC22 845778 sc-eQTL 6.88e-01 0.0395 0.0981 0.838 NK_CD56dim L2
ENSG00000116133 DHCR24 759906 sc-eQTL 5.47e-02 -0.196 0.101 0.838 NK_CD56dim L2
ENSG00000162398 LEXM 841038 sc-eQTL 4.64e-01 -0.0737 0.1 0.838 NK_CD56dim L2
ENSG00000162402 USP24 431737 sc-eQTL 5.24e-01 0.0408 0.0639 0.838 NK_CD56dim L2
ENSG00000243725 TTC4 931240 sc-eQTL 5.60e-01 0.0639 0.109 0.838 NK_CD56dim L2
ENSG00000006555 TTC22 845778 sc-eQTL 7.77e-01 0.0336 0.118 0.836 NK_HLA L2
ENSG00000116133 DHCR24 759906 sc-eQTL 4.18e-01 -0.0933 0.115 0.836 NK_HLA L2
ENSG00000162398 LEXM 841038 sc-eQTL 4.64e-02 -0.222 0.111 0.836 NK_HLA L2
ENSG00000162402 USP24 431737 sc-eQTL 5.49e-01 -0.0493 0.0821 0.836 NK_HLA L2
ENSG00000243725 TTC4 931240 sc-eQTL 6.37e-02 0.227 0.122 0.836 NK_HLA L2
ENSG00000006555 TTC22 845778 sc-eQTL 2.99e-01 0.108 0.104 0.838 NK_cytokine L2
ENSG00000116133 DHCR24 759906 sc-eQTL 3.57e-02 -0.22 0.104 0.838 NK_cytokine L2
ENSG00000162398 LEXM 841038 sc-eQTL 1.50e-01 -0.158 0.109 0.838 NK_cytokine L2
ENSG00000162402 USP24 431737 sc-eQTL 6.61e-01 0.0329 0.0748 0.838 NK_cytokine L2
ENSG00000243725 TTC4 931240 sc-eQTL 7.30e-01 0.0383 0.111 0.838 NK_cytokine L2
ENSG00000006555 TTC22 845778 sc-eQTL 2.43e-01 -0.152 0.13 0.833 PB L2
ENSG00000116133 DHCR24 759906 sc-eQTL 2.88e-01 0.123 0.115 0.833 PB L2
ENSG00000162402 USP24 431737 sc-eQTL 7.11e-01 0.052 0.14 0.833 PB L2
ENSG00000162407 PLPP3 -998200 sc-eQTL 2.99e-01 -0.131 0.126 0.833 PB L2
ENSG00000243725 TTC4 931240 sc-eQTL 8.04e-01 0.0337 0.136 0.833 PB L2
ENSG00000006555 TTC22 845778 sc-eQTL 6.74e-01 -0.044 0.104 0.837 Pro_T L2
ENSG00000116133 DHCR24 759906 sc-eQTL 9.41e-01 0.00663 0.0887 0.837 Pro_T L2
ENSG00000162402 USP24 431737 sc-eQTL 2.02e-01 0.128 0.1 0.837 Pro_T L2
ENSG00000243725 TTC4 931240 sc-eQTL 6.91e-01 0.044 0.111 0.837 Pro_T L2
ENSG00000006555 TTC22 845778 sc-eQTL 8.98e-01 0.0135 0.105 0.838 Treg L2
ENSG00000162402 USP24 431737 sc-eQTL 1.23e-01 0.144 0.0931 0.838 Treg L2
ENSG00000243725 TTC4 931240 sc-eQTL 2.18e-01 -0.145 0.118 0.838 Treg L2
ENSG00000116133 DHCR24 759906 sc-eQTL 6.12e-01 0.0468 0.0919 0.824 cDC L2
ENSG00000162402 USP24 431737 sc-eQTL 7.45e-01 -0.0369 0.113 0.824 cDC L2
ENSG00000243725 TTC4 931240 sc-eQTL 2.50e-01 0.134 0.116 0.824 cDC L2
ENSG00000116133 DHCR24 759906 sc-eQTL 2.71e-01 -0.0739 0.067 0.838 cMono_IL1B L2
ENSG00000162402 USP24 431737 sc-eQTL 8.00e-02 0.133 0.0755 0.838 cMono_IL1B L2
ENSG00000243725 TTC4 931240 sc-eQTL 5.31e-02 0.224 0.115 0.838 cMono_IL1B L2
ENSG00000116133 DHCR24 759906 sc-eQTL 5.95e-01 0.0337 0.0632 0.838 cMono_S100A L2
ENSG00000162402 USP24 431737 sc-eQTL 3.26e-01 0.0921 0.0935 0.838 cMono_S100A L2
ENSG00000243725 TTC4 931240 sc-eQTL 8.04e-01 -0.0291 0.117 0.838 cMono_S100A L2
ENSG00000006555 TTC22 845778 sc-eQTL 1.18e-01 0.172 0.11 0.845 gdT L2
ENSG00000116133 DHCR24 759906 sc-eQTL 9.70e-01 -0.00458 0.123 0.845 gdT L2
ENSG00000162402 USP24 431737 sc-eQTL 1.18e-01 0.185 0.117 0.845 gdT L2
ENSG00000243725 TTC4 931240 sc-eQTL 9.55e-01 -0.00787 0.139 0.845 gdT L2
ENSG00000116133 DHCR24 759906 sc-eQTL 6.45e-01 -0.0391 0.0849 0.84 intMono L2
ENSG00000162402 USP24 431737 sc-eQTL 7.58e-01 0.0333 0.108 0.84 intMono L2
ENSG00000243725 TTC4 931240 sc-eQTL 6.65e-02 -0.211 0.114 0.84 intMono L2
ENSG00000116133 DHCR24 759906 sc-eQTL 2.41e-01 -0.1 0.0851 0.839 ncMono L2
ENSG00000162402 USP24 431737 sc-eQTL 6.72e-01 -0.0408 0.0962 0.839 ncMono L2
ENSG00000243725 TTC4 931240 sc-eQTL 1.72e-01 0.156 0.113 0.839 ncMono L2
ENSG00000116133 DHCR24 759906 sc-eQTL 7.15e-02 0.178 0.098 0.822 pDC L2
ENSG00000162402 USP24 431737 sc-eQTL 2.74e-01 -0.0868 0.0791 0.822 pDC L2
ENSG00000243725 TTC4 931240 sc-eQTL 6.57e-01 -0.0557 0.125 0.822 pDC L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000006555 TTC22 845778 sc-eQTL 2.20e-01 -0.135 0.11 0.838 B_Memory LOneK1K
ENSG00000116133 DHCR24 759906 sc-eQTL 7.11e-01 -0.0409 0.11 0.838 B_Memory LOneK1K
ENSG00000162402 USP24 431737 sc-eQTL 2.06e-01 0.0996 0.0785 0.838 B_Memory LOneK1K
ENSG00000162407 PLPP3 -998200 sc-eQTL 6.10e-01 0.0501 0.0981 0.838 B_Memory LOneK1K
ENSG00000243725 TTC4 931240 sc-eQTL 4.27e-01 0.0863 0.109 0.838 B_Memory LOneK1K
ENSG00000006555 TTC22 845778 sc-eQTL 6.83e-01 -0.0471 0.115 0.838 B_Naive LOneK1K
ENSG00000116133 DHCR24 759906 sc-eQTL 9.26e-01 0.00965 0.104 0.838 B_Naive LOneK1K
ENSG00000162402 USP24 431737 sc-eQTL 1.15e-01 0.116 0.0731 0.838 B_Naive LOneK1K
ENSG00000162407 PLPP3 -998200 sc-eQTL 3.49e-01 -0.108 0.114 0.838 B_Naive LOneK1K
ENSG00000243725 TTC4 931240 sc-eQTL 7.29e-02 0.196 0.109 0.838 B_Naive LOneK1K
ENSG00000116133 DHCR24 759906 sc-eQTL 6.50e-01 -0.0296 0.0653 0.838 CD14_Mono LOneK1K
ENSG00000162402 USP24 431737 sc-eQTL 5.53e-02 0.136 0.0707 0.838 CD14_Mono LOneK1K
ENSG00000243725 TTC4 931240 sc-eQTL 1.66e-01 0.164 0.118 0.838 CD14_Mono LOneK1K
ENSG00000116133 DHCR24 759906 sc-eQTL 4.82e-01 -0.0561 0.0796 0.836 CD16_Mono LOneK1K
ENSG00000162402 USP24 431737 sc-eQTL 8.58e-01 0.0161 0.0897 0.836 CD16_Mono LOneK1K
ENSG00000243725 TTC4 931240 sc-eQTL 7.37e-01 0.0378 0.112 0.836 CD16_Mono LOneK1K
ENSG00000006555 TTC22 845778 sc-eQTL 3.69e-01 0.086 0.0955 0.838 NK_CD56dim LOneK1K
ENSG00000116133 DHCR24 759906 sc-eQTL 2.96e-02 -0.216 0.0988 0.838 NK_CD56dim LOneK1K
ENSG00000162398 LEXM 841038 sc-eQTL 2.03e-01 -0.119 0.0936 0.838 NK_CD56dim LOneK1K
ENSG00000162402 USP24 431737 sc-eQTL 6.33e-01 0.0285 0.0595 0.838 NK_CD56dim LOneK1K
ENSG00000243725 TTC4 931240 sc-eQTL 2.07e-01 0.134 0.106 0.838 NK_CD56dim LOneK1K

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000162398 LEXM 841038 eQTL 0.00163 0.0858 0.0271 0.0087 0.00217 0.162
ENSG00000169174 PCSK9 607553 eQTL 0.0227 0.0507 0.0222 0.00114 0.0 0.162

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000162396 \N 882578 2.67e-07 1.3e-07 4.98e-08 1.81e-07 9.87e-08 9.9e-08 1.61e-07 5.66e-08 1.45e-07 5.67e-08 1.52e-07 1.01e-07 1.47e-07 7.13e-08 6.25e-08 7.49e-08 4.01e-08 1.33e-07 6.07e-08 4.31e-08 1.22e-07 1.24e-07 1.45e-07 2.91e-08 1.5e-07 1.21e-07 1.1e-07 9.74e-08 1.2e-07 1e-07 1.02e-07 3.1e-08 4.02e-08 8.25e-08 7.02e-08 3.04e-08 5.04e-08 9.36e-08 6.59e-08 4.47e-08 5.34e-08 1.4e-07 5.21e-08 1.42e-08 3.42e-08 1.84e-08 1.21e-07 1.88e-09 4.99e-08