logo

Genes within 1Mb (chr1:55555316:A:C):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000006555 TTC22 753993 sc-eQTL 8.93e-01 -0.0114 0.0848 0.419 B L1
ENSG00000116133 DHCR24 668121 sc-eQTL 5.14e-01 -0.0524 0.0801 0.419 B L1
ENSG00000162402 USP24 339952 sc-eQTL 9.79e-01 -0.0013 0.0489 0.419 B L1
ENSG00000243725 TTC4 839455 sc-eQTL 9.91e-01 0.00091 0.082 0.419 B L1
ENSG00000006555 TTC22 753993 sc-eQTL 1.53e-01 0.0948 0.0661 0.419 CD4T L1
ENSG00000162402 USP24 339952 sc-eQTL 8.11e-01 -0.0113 0.0473 0.419 CD4T L1
ENSG00000243725 TTC4 839455 sc-eQTL 8.92e-01 -0.0097 0.0712 0.419 CD4T L1
ENSG00000006555 TTC22 753993 sc-eQTL 3.42e-01 -0.0549 0.0577 0.419 CD8T L1
ENSG00000162402 USP24 339952 sc-eQTL 4.15e-01 -0.039 0.0477 0.419 CD8T L1
ENSG00000243725 TTC4 839455 sc-eQTL 1.33e-01 0.124 0.0825 0.419 CD8T L1
ENSG00000116133 DHCR24 668121 sc-eQTL 1.33e-01 0.117 0.0773 0.414 DC L1
ENSG00000162402 USP24 339952 sc-eQTL 9.76e-02 -0.0786 0.0473 0.414 DC L1
ENSG00000243725 TTC4 839455 sc-eQTL 8.92e-02 0.157 0.0919 0.414 DC L1
ENSG00000116133 DHCR24 668121 sc-eQTL 2.33e-01 -0.0658 0.055 0.419 Mono L1
ENSG00000162402 USP24 339952 sc-eQTL 6.99e-01 0.0196 0.0505 0.419 Mono L1
ENSG00000243725 TTC4 839455 sc-eQTL 7.26e-02 0.159 0.0883 0.419 Mono L1
ENSG00000006555 TTC22 753993 sc-eQTL 3.46e-02 -0.16 0.075 0.421 NK L1
ENSG00000116133 DHCR24 668121 sc-eQTL 4.17e-01 0.0622 0.0764 0.421 NK L1
ENSG00000162398 LEXM 749253 sc-eQTL 3.49e-01 0.067 0.0714 0.421 NK L1
ENSG00000162402 USP24 339952 sc-eQTL 8.29e-01 -0.00937 0.0434 0.421 NK L1
ENSG00000243725 TTC4 839455 sc-eQTL 8.80e-01 -0.0124 0.082 0.421 NK L1
ENSG00000006555 TTC22 753993 sc-eQTL 6.01e-01 0.0357 0.0682 0.419 Other_T L1
ENSG00000116133 DHCR24 668121 sc-eQTL 5.10e-02 0.103 0.0524 0.419 Other_T L1
ENSG00000162402 USP24 339952 sc-eQTL 2.93e-01 0.0659 0.0625 0.419 Other_T L1
ENSG00000243725 TTC4 839455 sc-eQTL 8.17e-01 -0.0198 0.0854 0.419 Other_T L1
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000006555 TTC22 753993 sc-eQTL 5.12e-01 -0.0476 0.0725 0.411 B_Activated L2
ENSG00000116133 DHCR24 668121 sc-eQTL 4.51e-03 -0.24 0.0833 0.411 B_Activated L2
ENSG00000162402 USP24 339952 sc-eQTL 7.58e-01 0.0286 0.0928 0.411 B_Activated L2
ENSG00000243725 TTC4 839455 sc-eQTL 4.61e-01 0.0655 0.0887 0.411 B_Activated L2
ENSG00000006555 TTC22 753993 sc-eQTL 2.86e-01 0.0975 0.091 0.418 B_Intermediate L2
ENSG00000116133 DHCR24 668121 sc-eQTL 9.03e-01 -0.0103 0.0847 0.418 B_Intermediate L2
ENSG00000162402 USP24 339952 sc-eQTL 1.07e-02 -0.17 0.0658 0.418 B_Intermediate L2
ENSG00000243725 TTC4 839455 sc-eQTL 1.91e-01 0.112 0.0857 0.418 B_Intermediate L2
ENSG00000006555 TTC22 753993 sc-eQTL 6.34e-01 -0.0419 0.088 0.416 B_Memory L2
ENSG00000116133 DHCR24 668121 sc-eQTL 6.03e-01 -0.0455 0.0873 0.416 B_Memory L2
ENSG00000162402 USP24 339952 sc-eQTL 8.87e-01 0.0103 0.072 0.416 B_Memory L2
ENSG00000243725 TTC4 839455 sc-eQTL 6.95e-01 0.0362 0.0923 0.416 B_Memory L2
ENSG00000006555 TTC22 753993 sc-eQTL 7.42e-01 -0.0298 0.0905 0.419 B_Naive1 L2
ENSG00000116133 DHCR24 668121 sc-eQTL 6.00e-01 0.0446 0.0848 0.419 B_Naive1 L2
ENSG00000162402 USP24 339952 sc-eQTL 1.83e-01 0.081 0.0606 0.419 B_Naive1 L2
ENSG00000243725 TTC4 839455 sc-eQTL 1.04e-01 -0.134 0.0824 0.419 B_Naive1 L2
ENSG00000006555 TTC22 753993 sc-eQTL 9.32e-01 0.00774 0.0905 0.416 B_Naive2 L2
ENSG00000116133 DHCR24 668121 sc-eQTL 4.64e-01 -0.0578 0.0787 0.416 B_Naive2 L2
ENSG00000162402 USP24 339952 sc-eQTL 7.27e-01 0.0231 0.0662 0.416 B_Naive2 L2
ENSG00000243725 TTC4 839455 sc-eQTL 5.52e-01 0.0577 0.0968 0.416 B_Naive2 L2
ENSG00000006555 TTC22 753993 sc-eQTL 6.25e-01 0.0419 0.0858 0.42 CD4_CTL L2
ENSG00000162402 USP24 339952 sc-eQTL 9.65e-01 -0.00363 0.0835 0.42 CD4_CTL L2
ENSG00000243725 TTC4 839455 sc-eQTL 4.98e-01 -0.0634 0.0933 0.42 CD4_CTL L2
ENSG00000006555 TTC22 753993 sc-eQTL 2.80e-01 0.0839 0.0774 0.419 CD4_Naive L2
ENSG00000162402 USP24 339952 sc-eQTL 8.04e-01 -0.0127 0.051 0.419 CD4_Naive L2
ENSG00000243725 TTC4 839455 sc-eQTL 8.74e-01 -0.0124 0.0777 0.419 CD4_Naive L2
ENSG00000006555 TTC22 753993 sc-eQTL 7.72e-01 0.0238 0.0819 0.419 CD4_TCM L2
ENSG00000162402 USP24 339952 sc-eQTL 5.24e-01 -0.0392 0.0614 0.419 CD4_TCM L2
ENSG00000243725 TTC4 839455 sc-eQTL 3.58e-01 0.0814 0.0883 0.419 CD4_TCM L2
ENSG00000006555 TTC22 753993 sc-eQTL 7.44e-01 0.0309 0.0946 0.419 CD4_TEM L2
ENSG00000162402 USP24 339952 sc-eQTL 9.65e-01 0.0031 0.0697 0.419 CD4_TEM L2
ENSG00000243725 TTC4 839455 sc-eQTL 4.30e-01 0.0728 0.092 0.419 CD4_TEM L2
ENSG00000006555 TTC22 753993 sc-eQTL 1.64e-01 -0.105 0.075 0.419 CD8_CTL L2
ENSG00000162402 USP24 339952 sc-eQTL 3.69e-01 0.0526 0.0583 0.419 CD8_CTL L2
ENSG00000243725 TTC4 839455 sc-eQTL 6.82e-01 -0.0358 0.0874 0.419 CD8_CTL L2
ENSG00000006555 TTC22 753993 sc-eQTL 3.17e-01 0.085 0.0847 0.419 CD8_Naive L2
ENSG00000162402 USP24 339952 sc-eQTL 3.70e-01 -0.0556 0.0619 0.419 CD8_Naive L2
ENSG00000243725 TTC4 839455 sc-eQTL 1.52e-01 0.13 0.0903 0.419 CD8_Naive L2
ENSG00000006555 TTC22 753993 sc-eQTL 7.12e-01 -0.0348 0.094 0.417 CD8_TCM L2
ENSG00000162402 USP24 339952 sc-eQTL 2.18e-02 -0.181 0.0784 0.417 CD8_TCM L2
ENSG00000243725 TTC4 839455 sc-eQTL 7.13e-01 0.0355 0.0965 0.417 CD8_TCM L2
ENSG00000006555 TTC22 753993 sc-eQTL 3.24e-01 -0.087 0.0881 0.42 CD8_TEM L2
ENSG00000162402 USP24 339952 sc-eQTL 4.29e-01 -0.0713 0.0899 0.42 CD8_TEM L2
ENSG00000243725 TTC4 839455 sc-eQTL 7.05e-02 -0.165 0.0907 0.42 CD8_TEM L2
ENSG00000006555 TTC22 753993 sc-eQTL 2.99e-02 0.176 0.0804 0.42 MAIT L2
ENSG00000116133 DHCR24 668121 sc-eQTL 6.47e-01 0.0276 0.0601 0.42 MAIT L2
ENSG00000162402 USP24 339952 sc-eQTL 5.49e-01 0.0439 0.0731 0.42 MAIT L2
ENSG00000243725 TTC4 839455 sc-eQTL 9.42e-01 0.0062 0.0846 0.42 MAIT L2
ENSG00000006555 TTC22 753993 sc-eQTL 1.76e-01 -0.124 0.0915 0.42 NK_CD56bright L2
ENSG00000116133 DHCR24 668121 sc-eQTL 6.62e-01 0.0356 0.0812 0.42 NK_CD56bright L2
ENSG00000162398 LEXM 749253 sc-eQTL 5.14e-01 -0.0543 0.0832 0.42 NK_CD56bright L2
ENSG00000162402 USP24 339952 sc-eQTL 4.10e-01 -0.059 0.0715 0.42 NK_CD56bright L2
ENSG00000243725 TTC4 839455 sc-eQTL 5.69e-01 -0.0515 0.0903 0.42 NK_CD56bright L2
ENSG00000006555 TTC22 753993 sc-eQTL 8.01e-02 -0.133 0.0757 0.42 NK_CD56dim L2
ENSG00000116133 DHCR24 668121 sc-eQTL 3.17e-01 0.0796 0.0794 0.42 NK_CD56dim L2
ENSG00000162398 LEXM 749253 sc-eQTL 3.03e-02 0.169 0.0773 0.42 NK_CD56dim L2
ENSG00000162402 USP24 339952 sc-eQTL 7.57e-01 -0.0154 0.0497 0.42 NK_CD56dim L2
ENSG00000243725 TTC4 839455 sc-eQTL 4.43e-01 0.0653 0.085 0.42 NK_CD56dim L2
ENSG00000006555 TTC22 753993 sc-eQTL 2.19e-01 -0.11 0.0894 0.427 NK_HLA L2
ENSG00000116133 DHCR24 668121 sc-eQTL 8.06e-02 0.152 0.0868 0.427 NK_HLA L2
ENSG00000162398 LEXM 749253 sc-eQTL 7.51e-01 -0.027 0.085 0.427 NK_HLA L2
ENSG00000162402 USP24 339952 sc-eQTL 2.05e-01 0.079 0.0621 0.427 NK_HLA L2
ENSG00000243725 TTC4 839455 sc-eQTL 4.28e-01 -0.0739 0.093 0.427 NK_HLA L2
ENSG00000006555 TTC22 753993 sc-eQTL 4.80e-01 -0.0579 0.0818 0.42 NK_cytokine L2
ENSG00000116133 DHCR24 668121 sc-eQTL 3.97e-01 -0.0702 0.0827 0.42 NK_cytokine L2
ENSG00000162398 LEXM 749253 sc-eQTL 1.96e-01 -0.112 0.086 0.42 NK_cytokine L2
ENSG00000162402 USP24 339952 sc-eQTL 6.28e-01 0.0285 0.0588 0.42 NK_cytokine L2
ENSG00000243725 TTC4 839455 sc-eQTL 4.24e-01 -0.0698 0.0871 0.42 NK_cytokine L2
ENSG00000006555 TTC22 753993 sc-eQTL 9.45e-01 -0.00771 0.111 0.407 PB L2
ENSG00000116133 DHCR24 668121 sc-eQTL 7.11e-01 -0.0364 0.0979 0.407 PB L2
ENSG00000162402 USP24 339952 sc-eQTL 2.99e-01 0.123 0.118 0.407 PB L2
ENSG00000243725 TTC4 839455 sc-eQTL 8.59e-01 -0.0204 0.115 0.407 PB L2
ENSG00000006555 TTC22 753993 sc-eQTL 6.60e-01 0.0368 0.0834 0.417 Pro_T L2
ENSG00000116133 DHCR24 668121 sc-eQTL 1.19e-02 0.177 0.0699 0.417 Pro_T L2
ENSG00000162402 USP24 339952 sc-eQTL 1.85e-01 0.107 0.0802 0.417 Pro_T L2
ENSG00000243725 TTC4 839455 sc-eQTL 4.42e-01 0.0679 0.0883 0.417 Pro_T L2
ENSG00000006555 TTC22 753993 sc-eQTL 8.66e-01 0.0141 0.0838 0.419 Treg L2
ENSG00000162402 USP24 339952 sc-eQTL 4.27e-01 0.0593 0.0745 0.419 Treg L2
ENSG00000243725 TTC4 839455 sc-eQTL 5.52e-02 -0.18 0.0932 0.419 Treg L2
ENSG00000116133 DHCR24 668121 sc-eQTL 8.97e-01 0.00976 0.0756 0.417 cDC L2
ENSG00000162402 USP24 339952 sc-eQTL 1.52e-01 -0.133 0.0927 0.417 cDC L2
ENSG00000243725 TTC4 839455 sc-eQTL 1.96e-01 0.123 0.0952 0.417 cDC L2
ENSG00000116133 DHCR24 668121 sc-eQTL 4.42e-01 -0.0417 0.0541 0.419 cMono_IL1B L2
ENSG00000162402 USP24 339952 sc-eQTL 5.93e-01 -0.0328 0.0613 0.419 cMono_IL1B L2
ENSG00000243725 TTC4 839455 sc-eQTL 8.16e-01 0.0219 0.0938 0.419 cMono_IL1B L2
ENSG00000116133 DHCR24 668121 sc-eQTL 4.92e-01 -0.0348 0.0505 0.419 cMono_S100A L2
ENSG00000162402 USP24 339952 sc-eQTL 1.93e-01 0.0975 0.0747 0.419 cMono_S100A L2
ENSG00000243725 TTC4 839455 sc-eQTL 6.24e-01 0.0461 0.0938 0.419 cMono_S100A L2
ENSG00000006555 TTC22 753993 sc-eQTL 7.42e-02 -0.149 0.0829 0.415 gdT L2
ENSG00000116133 DHCR24 668121 sc-eQTL 9.56e-01 0.00518 0.0934 0.415 gdT L2
ENSG00000162402 USP24 339952 sc-eQTL 3.35e-01 -0.0866 0.0895 0.415 gdT L2
ENSG00000243725 TTC4 839455 sc-eQTL 8.10e-01 0.0253 0.105 0.415 gdT L2
ENSG00000116133 DHCR24 668121 sc-eQTL 2.91e-01 -0.0724 0.0683 0.416 intMono L2
ENSG00000162402 USP24 339952 sc-eQTL 3.24e-01 -0.0862 0.0871 0.416 intMono L2
ENSG00000243725 TTC4 839455 sc-eQTL 3.82e-01 0.0813 0.0928 0.416 intMono L2
ENSG00000116133 DHCR24 668121 sc-eQTL 1.94e-01 -0.0861 0.0661 0.419 ncMono L2
ENSG00000162402 USP24 339952 sc-eQTL 7.27e-01 0.0261 0.0748 0.419 ncMono L2
ENSG00000243725 TTC4 839455 sc-eQTL 2.69e-01 0.098 0.0883 0.419 ncMono L2
ENSG00000116133 DHCR24 668121 sc-eQTL 1.25e-02 0.198 0.0783 0.432 pDC L2
ENSG00000162402 USP24 339952 sc-eQTL 9.17e-01 -0.00671 0.0641 0.432 pDC L2
ENSG00000243725 TTC4 839455 sc-eQTL 7.56e-02 0.179 0.1 0.432 pDC L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000006555 TTC22 753993 sc-eQTL 9.40e-01 0.00648 0.0856 0.419 B_Memory LOneK1K
ENSG00000116133 DHCR24 668121 sc-eQTL 2.52e-01 -0.0984 0.0857 0.419 B_Memory LOneK1K
ENSG00000162402 USP24 339952 sc-eQTL 2.31e-01 -0.0734 0.0612 0.419 B_Memory LOneK1K
ENSG00000243725 TTC4 839455 sc-eQTL 1.75e-01 0.115 0.0843 0.419 B_Memory LOneK1K
ENSG00000006555 TTC22 753993 sc-eQTL 8.41e-01 -0.0183 0.091 0.419 B_Naive LOneK1K
ENSG00000116133 DHCR24 668121 sc-eQTL 6.47e-01 0.0376 0.082 0.419 B_Naive LOneK1K
ENSG00000162402 USP24 339952 sc-eQTL 2.90e-01 0.0615 0.0579 0.419 B_Naive LOneK1K
ENSG00000243725 TTC4 839455 sc-eQTL 3.83e-01 -0.0755 0.0864 0.419 B_Naive LOneK1K
ENSG00000116133 DHCR24 668121 sc-eQTL 4.16e-01 -0.0426 0.0522 0.419 CD14_Mono LOneK1K
ENSG00000162402 USP24 339952 sc-eQTL 7.00e-01 0.022 0.0571 0.419 CD14_Mono LOneK1K
ENSG00000243725 TTC4 839455 sc-eQTL 5.00e-01 0.0639 0.0947 0.419 CD14_Mono LOneK1K
ENSG00000116133 DHCR24 668121 sc-eQTL 1.24e-01 -0.0976 0.0632 0.42 CD16_Mono LOneK1K
ENSG00000162402 USP24 339952 sc-eQTL 6.25e-01 -0.035 0.0715 0.42 CD16_Mono LOneK1K
ENSG00000243725 TTC4 839455 sc-eQTL 5.13e-02 0.174 0.0888 0.42 CD16_Mono LOneK1K
ENSG00000006555 TTC22 753993 sc-eQTL 4.56e-02 -0.148 0.0734 0.42 NK_CD56dim LOneK1K
ENSG00000116133 DHCR24 668121 sc-eQTL 4.31e-01 0.0609 0.0773 0.42 NK_CD56dim LOneK1K
ENSG00000162398 LEXM 749253 sc-eQTL 3.10e-01 0.0738 0.0726 0.42 NK_CD56dim LOneK1K
ENSG00000162402 USP24 339952 sc-eQTL 9.69e-01 0.00182 0.0461 0.42 NK_CD56dim LOneK1K
ENSG00000243725 TTC4 839455 sc-eQTL 8.61e-01 -0.0144 0.0821 0.42 NK_CD56dim LOneK1K

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000162396 PARS2 790793 eQTL 0.0379 0.0542 0.0261 0.0 0.0 0.446
ENSG00000162398 LEXM 749253 eQTL 0.0376 -0.0406 0.0195 0.0 0.0 0.446

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000162396 PARS2 790793 2.74e-07 1.35e-07 5.72e-08 2.01e-07 9.87e-08 9.05e-08 1.67e-07 5.75e-08 1.45e-07 6.4e-08 1.73e-07 1.05e-07 1.71e-07 7.64e-08 5.72e-08 7.5e-08 4.12e-08 1.44e-07 7.12e-08 4.92e-08 1.27e-07 1.26e-07 1.5e-07 2.87e-08 1.65e-07 1.26e-07 1.13e-07 1.06e-07 1.22e-07 1.05e-07 1.07e-07 3.03e-08 3.13e-08 8.89e-08 4.92e-08 3.14e-08 5.58e-08 8.89e-08 6.71e-08 4.19e-08 5.13e-08 1.46e-07 5.08e-08 2.06e-08 3.4e-08 1.65e-08 1e-07 1.96e-09 4.94e-08