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Genes within 1Mb (chr1:55532762:G:A):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000006555 TTC22 731439 sc-eQTL 7.38e-01 -0.0278 0.0829 0.59 B L1
ENSG00000116133 DHCR24 645567 sc-eQTL 9.38e-01 0.00608 0.0784 0.59 B L1
ENSG00000162402 USP24 317398 sc-eQTL 5.25e-01 -0.0304 0.0478 0.59 B L1
ENSG00000243725 TTC4 816901 sc-eQTL 3.83e-01 -0.0699 0.08 0.59 B L1
ENSG00000006555 TTC22 731439 sc-eQTL 4.06e-01 -0.0546 0.0655 0.59 CD4T L1
ENSG00000162402 USP24 317398 sc-eQTL 8.38e-01 -0.00955 0.0467 0.59 CD4T L1
ENSG00000243725 TTC4 816901 sc-eQTL 8.18e-01 -0.0162 0.0703 0.59 CD4T L1
ENSG00000006555 TTC22 731439 sc-eQTL 3.47e-01 0.0524 0.0555 0.59 CD8T L1
ENSG00000162402 USP24 317398 sc-eQTL 5.03e-01 -0.0309 0.046 0.59 CD8T L1
ENSG00000243725 TTC4 816901 sc-eQTL 8.87e-03 -0.208 0.0786 0.59 CD8T L1
ENSG00000116133 DHCR24 645567 sc-eQTL 9.71e-02 -0.123 0.074 0.59 DC L1
ENSG00000162390 ACOT11 990505 sc-eQTL 1.72e-01 -0.103 0.0752 0.59 DC L1
ENSG00000162402 USP24 317398 sc-eQTL 4.99e-01 0.0308 0.0456 0.59 DC L1
ENSG00000243725 TTC4 816901 sc-eQTL 3.79e-01 -0.0781 0.0885 0.59 DC L1
ENSG00000116133 DHCR24 645567 sc-eQTL 2.62e-01 0.06 0.0534 0.59 Mono L1
ENSG00000162402 USP24 317398 sc-eQTL 7.13e-01 -0.0181 0.049 0.59 Mono L1
ENSG00000243725 TTC4 816901 sc-eQTL 1.45e-01 -0.126 0.0858 0.59 Mono L1
ENSG00000006555 TTC22 731439 sc-eQTL 5.99e-02 0.138 0.0731 0.59 NK L1
ENSG00000116133 DHCR24 645567 sc-eQTL 7.79e-01 -0.0209 0.0744 0.59 NK L1
ENSG00000162398 LEXM 726699 sc-eQTL 5.36e-01 -0.0431 0.0695 0.59 NK L1
ENSG00000162402 USP24 317398 sc-eQTL 6.79e-01 -0.0175 0.0422 0.59 NK L1
ENSG00000243725 TTC4 816901 sc-eQTL 2.19e-01 -0.0981 0.0795 0.59 NK L1
ENSG00000006555 TTC22 731439 sc-eQTL 4.12e-01 0.055 0.0669 0.59 Other_T L1
ENSG00000116133 DHCR24 645567 sc-eQTL 7.22e-02 -0.0933 0.0516 0.59 Other_T L1
ENSG00000162402 USP24 317398 sc-eQTL 6.63e-01 -0.0269 0.0616 0.59 Other_T L1
ENSG00000243725 TTC4 816901 sc-eQTL 6.17e-01 -0.0421 0.0839 0.59 Other_T L1
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000006555 TTC22 731439 sc-eQTL 5.26e-01 0.0445 0.07 0.607 B_Activated L2
ENSG00000116133 DHCR24 645567 sc-eQTL 4.25e-02 0.166 0.0813 0.607 B_Activated L2
ENSG00000162402 USP24 317398 sc-eQTL 3.81e-01 0.0785 0.0894 0.607 B_Activated L2
ENSG00000243725 TTC4 816901 sc-eQTL 3.50e-01 -0.0802 0.0855 0.607 B_Activated L2
ENSG00000006555 TTC22 731439 sc-eQTL 6.84e-01 -0.0367 0.0901 0.59 B_Intermediate L2
ENSG00000116133 DHCR24 645567 sc-eQTL 7.75e-02 0.147 0.083 0.59 B_Intermediate L2
ENSG00000162402 USP24 317398 sc-eQTL 1.30e-01 0.0998 0.0656 0.59 B_Intermediate L2
ENSG00000243725 TTC4 816901 sc-eQTL 1.31e-02 -0.209 0.0837 0.59 B_Intermediate L2
ENSG00000006555 TTC22 731439 sc-eQTL 9.50e-01 -0.00526 0.0844 0.593 B_Memory L2
ENSG00000116133 DHCR24 645567 sc-eQTL 4.74e-01 -0.0601 0.0837 0.593 B_Memory L2
ENSG00000162402 USP24 317398 sc-eQTL 2.91e-01 -0.0729 0.0689 0.593 B_Memory L2
ENSG00000243725 TTC4 816901 sc-eQTL 4.43e-01 0.068 0.0884 0.593 B_Memory L2
ENSG00000006555 TTC22 731439 sc-eQTL 3.87e-01 -0.0759 0.0875 0.59 B_Naive1 L2
ENSG00000116133 DHCR24 645567 sc-eQTL 7.89e-01 -0.022 0.0822 0.59 B_Naive1 L2
ENSG00000162402 USP24 317398 sc-eQTL 4.53e-02 -0.118 0.0584 0.59 B_Naive1 L2
ENSG00000243725 TTC4 816901 sc-eQTL 5.81e-01 0.0443 0.0802 0.59 B_Naive1 L2
ENSG00000006555 TTC22 731439 sc-eQTL 5.24e-01 0.056 0.0878 0.592 B_Naive2 L2
ENSG00000116133 DHCR24 645567 sc-eQTL 4.09e-01 0.0632 0.0764 0.592 B_Naive2 L2
ENSG00000162402 USP24 317398 sc-eQTL 6.73e-01 0.0271 0.0642 0.592 B_Naive2 L2
ENSG00000243725 TTC4 816901 sc-eQTL 1.72e-01 -0.128 0.0937 0.592 B_Naive2 L2
ENSG00000006555 TTC22 731439 sc-eQTL 5.50e-01 0.0504 0.0843 0.598 CD4_CTL L2
ENSG00000162402 USP24 317398 sc-eQTL 8.63e-01 -0.0141 0.082 0.598 CD4_CTL L2
ENSG00000243725 TTC4 816901 sc-eQTL 2.10e-01 0.115 0.0915 0.598 CD4_CTL L2
ENSG00000006555 TTC22 731439 sc-eQTL 4.35e-01 -0.0595 0.0761 0.59 CD4_Naive L2
ENSG00000162402 USP24 317398 sc-eQTL 6.69e-01 0.0215 0.0501 0.59 CD4_Naive L2
ENSG00000243725 TTC4 816901 sc-eQTL 5.33e-01 -0.0476 0.0762 0.59 CD4_Naive L2
ENSG00000006555 TTC22 731439 sc-eQTL 8.79e-01 0.0122 0.08 0.59 CD4_TCM L2
ENSG00000162402 USP24 317398 sc-eQTL 7.20e-01 0.0215 0.06 0.59 CD4_TCM L2
ENSG00000243725 TTC4 816901 sc-eQTL 5.34e-01 -0.0538 0.0864 0.59 CD4_TCM L2
ENSG00000006555 TTC22 731439 sc-eQTL 3.46e-01 -0.0882 0.0935 0.59 CD4_TEM L2
ENSG00000162402 USP24 317398 sc-eQTL 7.35e-02 -0.123 0.0685 0.59 CD4_TEM L2
ENSG00000243725 TTC4 816901 sc-eQTL 3.06e-01 -0.0933 0.0911 0.59 CD4_TEM L2
ENSG00000006555 TTC22 731439 sc-eQTL 6.89e-01 0.0294 0.0734 0.59 CD8_CTL L2
ENSG00000162402 USP24 317398 sc-eQTL 1.46e-01 -0.0827 0.0567 0.59 CD8_CTL L2
ENSG00000243725 TTC4 816901 sc-eQTL 8.94e-01 0.0114 0.0852 0.59 CD8_CTL L2
ENSG00000006555 TTC22 731439 sc-eQTL 5.12e-01 0.0538 0.0819 0.59 CD8_Naive L2
ENSG00000162402 USP24 317398 sc-eQTL 6.35e-01 -0.0285 0.0599 0.59 CD8_Naive L2
ENSG00000243725 TTC4 816901 sc-eQTL 2.03e-01 -0.112 0.0873 0.59 CD8_Naive L2
ENSG00000006555 TTC22 731439 sc-eQTL 4.99e-01 0.0598 0.0884 0.597 CD8_TCM L2
ENSG00000162402 USP24 317398 sc-eQTL 3.44e-01 0.0707 0.0746 0.597 CD8_TCM L2
ENSG00000243725 TTC4 816901 sc-eQTL 5.27e-01 -0.0575 0.0908 0.597 CD8_TCM L2
ENSG00000006555 TTC22 731439 sc-eQTL 3.21e-01 0.0859 0.0864 0.589 CD8_TEM L2
ENSG00000162402 USP24 317398 sc-eQTL 3.04e-01 0.0908 0.0881 0.589 CD8_TEM L2
ENSG00000243725 TTC4 816901 sc-eQTL 8.56e-01 0.0163 0.0897 0.589 CD8_TEM L2
ENSG00000006555 TTC22 731439 sc-eQTL 5.46e-01 -0.0484 0.0799 0.591 MAIT L2
ENSG00000116133 DHCR24 645567 sc-eQTL 5.82e-01 -0.0326 0.0591 0.591 MAIT L2
ENSG00000162402 USP24 317398 sc-eQTL 8.47e-01 -0.0139 0.072 0.591 MAIT L2
ENSG00000243725 TTC4 816901 sc-eQTL 5.88e-01 0.0451 0.0831 0.591 MAIT L2
ENSG00000006555 TTC22 731439 sc-eQTL 4.65e-02 0.18 0.0897 0.587 NK_CD56bright L2
ENSG00000116133 DHCR24 645567 sc-eQTL 8.74e-01 0.0128 0.08 0.587 NK_CD56bright L2
ENSG00000162398 LEXM 726699 sc-eQTL 4.35e-01 0.0641 0.0819 0.587 NK_CD56bright L2
ENSG00000162402 USP24 317398 sc-eQTL 7.00e-01 0.0272 0.0705 0.587 NK_CD56bright L2
ENSG00000243725 TTC4 816901 sc-eQTL 7.78e-01 0.0251 0.089 0.587 NK_CD56bright L2
ENSG00000006555 TTC22 731439 sc-eQTL 3.37e-01 0.071 0.0738 0.591 NK_CD56dim L2
ENSG00000116133 DHCR24 645567 sc-eQTL 6.43e-01 -0.0358 0.0771 0.591 NK_CD56dim L2
ENSG00000162398 LEXM 726699 sc-eQTL 3.05e-02 -0.163 0.075 0.591 NK_CD56dim L2
ENSG00000162402 USP24 317398 sc-eQTL 8.29e-01 0.0104 0.0482 0.591 NK_CD56dim L2
ENSG00000243725 TTC4 816901 sc-eQTL 3.22e-01 -0.0818 0.0823 0.591 NK_CD56dim L2
ENSG00000006555 TTC22 731439 sc-eQTL 3.91e-01 0.0751 0.0873 0.584 NK_HLA L2
ENSG00000116133 DHCR24 645567 sc-eQTL 1.23e-01 -0.131 0.0848 0.584 NK_HLA L2
ENSG00000162398 LEXM 726699 sc-eQTL 8.36e-01 0.0172 0.0829 0.584 NK_HLA L2
ENSG00000162402 USP24 317398 sc-eQTL 2.21e-01 -0.0744 0.0606 0.584 NK_HLA L2
ENSG00000243725 TTC4 816901 sc-eQTL 8.72e-01 -0.0147 0.0909 0.584 NK_HLA L2
ENSG00000006555 TTC22 731439 sc-eQTL 1.25e-01 0.121 0.0786 0.591 NK_cytokine L2
ENSG00000116133 DHCR24 645567 sc-eQTL 8.18e-01 0.0184 0.0799 0.591 NK_cytokine L2
ENSG00000162398 LEXM 726699 sc-eQTL 4.41e-01 0.0642 0.0832 0.591 NK_cytokine L2
ENSG00000162402 USP24 317398 sc-eQTL 8.92e-01 -0.00774 0.0568 0.591 NK_cytokine L2
ENSG00000243725 TTC4 816901 sc-eQTL 1.18e-01 -0.131 0.0837 0.591 NK_cytokine L2
ENSG00000006555 TTC22 731439 sc-eQTL 4.17e-01 0.0886 0.109 0.585 PB L2
ENSG00000116133 DHCR24 645567 sc-eQTL 8.56e-01 -0.0176 0.0966 0.585 PB L2
ENSG00000162402 USP24 317398 sc-eQTL 8.96e-01 0.0154 0.117 0.585 PB L2
ENSG00000243725 TTC4 816901 sc-eQTL 9.06e-01 0.0135 0.113 0.585 PB L2
ENSG00000006555 TTC22 731439 sc-eQTL 5.44e-01 0.0497 0.0818 0.589 Pro_T L2
ENSG00000116133 DHCR24 645567 sc-eQTL 3.40e-01 -0.0665 0.0695 0.589 Pro_T L2
ENSG00000162402 USP24 317398 sc-eQTL 6.18e-01 -0.0394 0.079 0.589 Pro_T L2
ENSG00000243725 TTC4 816901 sc-eQTL 7.62e-02 -0.153 0.0861 0.589 Pro_T L2
ENSG00000006555 TTC22 731439 sc-eQTL 2.95e-01 0.0859 0.0818 0.59 Treg L2
ENSG00000162402 USP24 317398 sc-eQTL 1.60e-01 -0.102 0.0727 0.59 Treg L2
ENSG00000243725 TTC4 816901 sc-eQTL 8.35e-03 0.241 0.0905 0.59 Treg L2
ENSG00000116133 DHCR24 645567 sc-eQTL 4.37e-01 -0.057 0.0732 0.585 cDC L2
ENSG00000162390 ACOT11 990505 sc-eQTL 1.88e-01 -0.106 0.0801 0.585 cDC L2
ENSG00000162402 USP24 317398 sc-eQTL 8.91e-02 0.153 0.0896 0.585 cDC L2
ENSG00000243725 TTC4 816901 sc-eQTL 8.12e-01 -0.0221 0.0926 0.585 cDC L2
ENSG00000116133 DHCR24 645567 sc-eQTL 3.62e-01 0.0478 0.0523 0.59 cMono_IL1B L2
ENSG00000162402 USP24 317398 sc-eQTL 9.61e-01 -0.00292 0.0593 0.59 cMono_IL1B L2
ENSG00000243725 TTC4 816901 sc-eQTL 4.98e-01 0.0615 0.0906 0.59 cMono_IL1B L2
ENSG00000116133 DHCR24 645567 sc-eQTL 3.80e-01 0.0431 0.049 0.59 cMono_S100A L2
ENSG00000162402 USP24 317398 sc-eQTL 2.51e-01 -0.0835 0.0725 0.59 cMono_S100A L2
ENSG00000243725 TTC4 816901 sc-eQTL 8.78e-02 -0.155 0.0904 0.59 cMono_S100A L2
ENSG00000006555 TTC22 731439 sc-eQTL 4.15e-01 0.0682 0.0834 0.588 gdT L2
ENSG00000116133 DHCR24 645567 sc-eQTL 2.28e-01 -0.112 0.0927 0.588 gdT L2
ENSG00000162402 USP24 317398 sc-eQTL 2.33e-01 0.107 0.0891 0.588 gdT L2
ENSG00000243725 TTC4 816901 sc-eQTL 7.89e-01 -0.0281 0.105 0.588 gdT L2
ENSG00000116133 DHCR24 645567 sc-eQTL 7.28e-01 0.0231 0.0662 0.589 intMono L2
ENSG00000162402 USP24 317398 sc-eQTL 3.73e-01 0.0753 0.0842 0.589 intMono L2
ENSG00000243725 TTC4 816901 sc-eQTL 9.28e-01 -0.00815 0.0899 0.589 intMono L2
ENSG00000116133 DHCR24 645567 sc-eQTL 9.69e-02 0.107 0.064 0.577 ncMono L2
ENSG00000162402 USP24 317398 sc-eQTL 6.29e-01 0.0351 0.0727 0.577 ncMono L2
ENSG00000243725 TTC4 816901 sc-eQTL 1.79e-01 -0.116 0.0857 0.577 ncMono L2
ENSG00000116133 DHCR24 645567 sc-eQTL 4.43e-02 -0.156 0.0769 0.573 pDC L2
ENSG00000162390 ACOT11 990505 sc-eQTL 7.78e-01 -0.0104 0.037 0.573 pDC L2
ENSG00000162402 USP24 317398 sc-eQTL 4.68e-01 0.0454 0.0624 0.573 pDC L2
ENSG00000243725 TTC4 816901 sc-eQTL 4.77e-01 -0.0703 0.0986 0.573 pDC L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000006555 TTC22 731439 sc-eQTL 9.61e-01 0.00409 0.0841 0.59 B_Memory LOneK1K
ENSG00000116133 DHCR24 645567 sc-eQTL 5.24e-01 0.0539 0.0843 0.59 B_Memory LOneK1K
ENSG00000162402 USP24 317398 sc-eQTL 4.42e-01 0.0463 0.0602 0.59 B_Memory LOneK1K
ENSG00000243725 TTC4 816901 sc-eQTL 9.14e-02 -0.14 0.0826 0.59 B_Memory LOneK1K
ENSG00000006555 TTC22 731439 sc-eQTL 7.49e-01 -0.0285 0.0887 0.59 B_Naive LOneK1K
ENSG00000116133 DHCR24 645567 sc-eQTL 9.30e-01 0.00703 0.0799 0.59 B_Naive LOneK1K
ENSG00000162402 USP24 317398 sc-eQTL 1.90e-01 -0.0741 0.0564 0.59 B_Naive LOneK1K
ENSG00000243725 TTC4 816901 sc-eQTL 5.72e-01 -0.0477 0.0842 0.59 B_Naive LOneK1K
ENSG00000116133 DHCR24 645567 sc-eQTL 2.14e-01 0.0629 0.0505 0.59 CD14_Mono LOneK1K
ENSG00000162402 USP24 317398 sc-eQTL 4.95e-01 -0.0378 0.0553 0.59 CD14_Mono LOneK1K
ENSG00000243725 TTC4 816901 sc-eQTL 8.49e-01 -0.0175 0.0918 0.59 CD14_Mono LOneK1K
ENSG00000116133 DHCR24 645567 sc-eQTL 4.73e-01 0.044 0.0612 0.588 CD16_Mono LOneK1K
ENSG00000162402 USP24 317398 sc-eQTL 2.59e-01 0.0779 0.0688 0.588 CD16_Mono LOneK1K
ENSG00000243725 TTC4 816901 sc-eQTL 6.22e-02 -0.161 0.0858 0.588 CD16_Mono LOneK1K
ENSG00000006555 TTC22 731439 sc-eQTL 1.70e-01 0.099 0.0718 0.591 NK_CD56dim LOneK1K
ENSG00000116133 DHCR24 645567 sc-eQTL 7.17e-01 -0.0273 0.0753 0.591 NK_CD56dim LOneK1K
ENSG00000162398 LEXM 726699 sc-eQTL 2.75e-01 -0.0772 0.0706 0.591 NK_CD56dim LOneK1K
ENSG00000162402 USP24 317398 sc-eQTL 6.32e-01 -0.0215 0.0449 0.591 NK_CD56dim LOneK1K
ENSG00000243725 TTC4 816901 sc-eQTL 1.23e-01 -0.123 0.0795 0.591 NK_CD56dim LOneK1K

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000169174 PCSK9 493214 pQTL 0.00962 -0.0704 0.0272 0.0 0.0 0.405
ENSG00000234810 AL603840.1 203474 eQTL 0.0125 -0.0751 0.03 0.0 0.0 0.423

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000116133 \N 645567 3.02e-07 1.5e-07 5.93e-08 2.07e-07 9.8e-08 8.21e-08 1.9e-07 5.62e-08 1.5e-07 6.75e-08 1.59e-07 1.15e-07 1.87e-07 7.95e-08 5.82e-08 7.98e-08 4.45e-08 1.64e-07 6.92e-08 4.95e-08 1.27e-07 1.31e-07 1.62e-07 3.4e-08 1.85e-07 1.26e-07 1.12e-07 1.06e-07 1.31e-07 1.07e-07 1.06e-07 3.55e-08 3.68e-08 9.3e-08 2.97e-08 2.79e-08 5.58e-08 9.17e-08 6.67e-08 3.6e-08 5.39e-08 1.5e-07 5.08e-08 7.78e-09 3.2e-08 1.65e-08 8.81e-08 1.92e-09 4.83e-08
ENSG00000234810 AL603840.1 203474 1.43e-06 1.55e-06 2.4e-07 1.23e-06 3.86e-07 6.28e-07 1.36e-06 4.13e-07 1.74e-06 6.77e-07 2.09e-06 1.01e-06 2.66e-06 3.58e-07 4.96e-07 1.01e-06 1.04e-06 1.15e-06 6.08e-07 4.81e-07 7.54e-07 1.98e-06 1.4e-06 6.91e-07 2.34e-06 8.03e-07 1.05e-06 8.69e-07 1.69e-06 1.36e-06 8.51e-07 2.62e-07 3.16e-07 5.91e-07 6.04e-07 6.02e-07 7.32e-07 3.65e-07 4.8e-07 2.44e-07 2.59e-07 2.13e-06 2.73e-07 1.38e-07 3.15e-07 2.35e-07 2.71e-07 1.4e-07 2.32e-07