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Genes within 1Mb (chr1:55532666:A:G):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000006555 TTC22 731343 sc-eQTL 3.55e-01 -0.0809 0.0873 0.66 B L1
ENSG00000116133 DHCR24 645471 sc-eQTL 7.91e-01 -0.022 0.0827 0.66 B L1
ENSG00000162402 USP24 317302 sc-eQTL 3.27e-01 -0.0495 0.0504 0.66 B L1
ENSG00000243725 TTC4 816805 sc-eQTL 7.40e-01 -0.028 0.0846 0.66 B L1
ENSG00000006555 TTC22 731343 sc-eQTL 3.58e-01 -0.063 0.0685 0.66 CD4T L1
ENSG00000162402 USP24 317302 sc-eQTL 4.31e-01 -0.0386 0.0488 0.66 CD4T L1
ENSG00000243725 TTC4 816805 sc-eQTL 9.73e-01 0.00248 0.0736 0.66 CD4T L1
ENSG00000006555 TTC22 731343 sc-eQTL 4.07e-01 0.049 0.0589 0.66 CD8T L1
ENSG00000162402 USP24 317302 sc-eQTL 5.65e-01 -0.0281 0.0488 0.66 CD8T L1
ENSG00000243725 TTC4 816805 sc-eQTL 2.72e-02 -0.186 0.0837 0.66 CD8T L1
ENSG00000116133 DHCR24 645471 sc-eQTL 3.77e-02 -0.163 0.0779 0.662 DC L1
ENSG00000162390 ACOT11 990409 sc-eQTL 2.85e-02 -0.174 0.0789 0.662 DC L1
ENSG00000162402 USP24 317302 sc-eQTL 2.77e-01 0.0524 0.0481 0.662 DC L1
ENSG00000243725 TTC4 816805 sc-eQTL 6.28e-02 -0.174 0.093 0.662 DC L1
ENSG00000116133 DHCR24 645471 sc-eQTL 3.01e-01 0.0585 0.0564 0.66 Mono L1
ENSG00000162402 USP24 317302 sc-eQTL 9.35e-01 -0.00421 0.0518 0.66 Mono L1
ENSG00000243725 TTC4 816805 sc-eQTL 8.45e-02 -0.157 0.0905 0.66 Mono L1
ENSG00000006555 TTC22 731343 sc-eQTL 4.93e-02 0.154 0.0777 0.659 NK L1
ENSG00000116133 DHCR24 645471 sc-eQTL 2.04e-01 -0.1 0.0789 0.659 NK L1
ENSG00000162398 LEXM 726603 sc-eQTL 6.83e-01 -0.0302 0.074 0.659 NK L1
ENSG00000162402 USP24 317302 sc-eQTL 7.97e-01 0.0115 0.0449 0.659 NK L1
ENSG00000243725 TTC4 816805 sc-eQTL 4.93e-01 -0.0582 0.0848 0.659 NK L1
ENSG00000006555 TTC22 731343 sc-eQTL 9.76e-01 0.0022 0.0715 0.66 Other_T L1
ENSG00000116133 DHCR24 645471 sc-eQTL 1.26e-02 -0.137 0.0546 0.66 Other_T L1
ENSG00000162402 USP24 317302 sc-eQTL 6.26e-01 -0.0321 0.0657 0.66 Other_T L1
ENSG00000243725 TTC4 816805 sc-eQTL 1.31e-01 -0.135 0.089 0.66 Other_T L1
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000006555 TTC22 731343 sc-eQTL 3.23e-01 0.0751 0.0758 0.668 B_Activated L2
ENSG00000116133 DHCR24 645471 sc-eQTL 1.66e-02 0.212 0.0878 0.668 B_Activated L2
ENSG00000162402 USP24 317302 sc-eQTL 8.09e-01 0.0235 0.0972 0.668 B_Activated L2
ENSG00000243725 TTC4 816805 sc-eQTL 4.58e-01 -0.0691 0.0929 0.668 B_Activated L2
ENSG00000006555 TTC22 731343 sc-eQTL 1.62e-01 -0.133 0.0948 0.661 B_Intermediate L2
ENSG00000116133 DHCR24 645471 sc-eQTL 4.29e-01 0.0699 0.0883 0.661 B_Intermediate L2
ENSG00000162402 USP24 317302 sc-eQTL 2.37e-01 0.0824 0.0695 0.661 B_Intermediate L2
ENSG00000243725 TTC4 816805 sc-eQTL 1.36e-01 -0.134 0.0893 0.661 B_Intermediate L2
ENSG00000006555 TTC22 731343 sc-eQTL 5.67e-01 0.0511 0.0891 0.664 B_Memory L2
ENSG00000116133 DHCR24 645471 sc-eQTL 5.35e-01 -0.0549 0.0884 0.664 B_Memory L2
ENSG00000162402 USP24 317302 sc-eQTL 4.45e-01 -0.0558 0.0729 0.664 B_Memory L2
ENSG00000243725 TTC4 816805 sc-eQTL 7.69e-01 0.0275 0.0935 0.664 B_Memory L2
ENSG00000006555 TTC22 731343 sc-eQTL 2.70e-01 -0.103 0.0934 0.66 B_Naive1 L2
ENSG00000116133 DHCR24 645471 sc-eQTL 7.05e-01 -0.0333 0.0878 0.66 B_Naive1 L2
ENSG00000162402 USP24 317302 sc-eQTL 1.32e-02 -0.155 0.0621 0.66 B_Naive1 L2
ENSG00000243725 TTC4 816805 sc-eQTL 1.39e-01 0.127 0.0853 0.66 B_Naive1 L2
ENSG00000006555 TTC22 731343 sc-eQTL 7.88e-01 0.0252 0.0934 0.663 B_Naive2 L2
ENSG00000116133 DHCR24 645471 sc-eQTL 7.72e-01 0.0236 0.0813 0.663 B_Naive2 L2
ENSG00000162402 USP24 317302 sc-eQTL 9.20e-01 0.00683 0.0683 0.663 B_Naive2 L2
ENSG00000243725 TTC4 816805 sc-eQTL 3.90e-02 -0.206 0.099 0.663 B_Naive2 L2
ENSG00000006555 TTC22 731343 sc-eQTL 1.85e-01 0.118 0.0889 0.668 CD4_CTL L2
ENSG00000162402 USP24 317302 sc-eQTL 6.41e-01 0.0405 0.0867 0.668 CD4_CTL L2
ENSG00000243725 TTC4 816805 sc-eQTL 3.97e-01 0.0823 0.097 0.668 CD4_CTL L2
ENSG00000006555 TTC22 731343 sc-eQTL 3.14e-01 -0.0804 0.0796 0.66 CD4_Naive L2
ENSG00000162402 USP24 317302 sc-eQTL 9.65e-01 -0.00229 0.0524 0.66 CD4_Naive L2
ENSG00000243725 TTC4 816805 sc-eQTL 4.82e-01 -0.0562 0.0798 0.66 CD4_Naive L2
ENSG00000006555 TTC22 731343 sc-eQTL 9.81e-01 -0.00206 0.0851 0.66 CD4_TCM L2
ENSG00000162402 USP24 317302 sc-eQTL 6.69e-01 -0.0273 0.0638 0.66 CD4_TCM L2
ENSG00000243725 TTC4 816805 sc-eQTL 8.29e-01 -0.0199 0.0919 0.66 CD4_TCM L2
ENSG00000006555 TTC22 731343 sc-eQTL 3.83e-01 -0.0857 0.0979 0.66 CD4_TEM L2
ENSG00000162402 USP24 317302 sc-eQTL 1.51e-01 -0.104 0.072 0.66 CD4_TEM L2
ENSG00000243725 TTC4 816805 sc-eQTL 9.79e-01 -0.00248 0.0956 0.66 CD4_TEM L2
ENSG00000006555 TTC22 731343 sc-eQTL 4.15e-01 0.0637 0.0779 0.66 CD8_CTL L2
ENSG00000162402 USP24 317302 sc-eQTL 5.40e-02 -0.116 0.06 0.66 CD8_CTL L2
ENSG00000243725 TTC4 816805 sc-eQTL 7.06e-01 -0.0342 0.0906 0.66 CD8_CTL L2
ENSG00000006555 TTC22 731343 sc-eQTL 8.39e-01 0.0177 0.087 0.66 CD8_Naive L2
ENSG00000162402 USP24 317302 sc-eQTL 3.45e-01 -0.06 0.0634 0.66 CD8_Naive L2
ENSG00000243725 TTC4 816805 sc-eQTL 1.65e-01 -0.129 0.0926 0.66 CD8_Naive L2
ENSG00000006555 TTC22 731343 sc-eQTL 6.78e-01 -0.0393 0.0947 0.667 CD8_TCM L2
ENSG00000162402 USP24 317302 sc-eQTL 1.41e-01 0.118 0.0796 0.667 CD8_TCM L2
ENSG00000243725 TTC4 816805 sc-eQTL 2.32e-01 -0.116 0.097 0.667 CD8_TCM L2
ENSG00000006555 TTC22 731343 sc-eQTL 4.61e-01 0.067 0.0906 0.66 CD8_TEM L2
ENSG00000162402 USP24 317302 sc-eQTL 1.63e-01 0.129 0.092 0.66 CD8_TEM L2
ENSG00000243725 TTC4 816805 sc-eQTL 5.89e-01 0.0507 0.0939 0.66 CD8_TEM L2
ENSG00000006555 TTC22 731343 sc-eQTL 1.29e-01 -0.127 0.0835 0.662 MAIT L2
ENSG00000116133 DHCR24 645471 sc-eQTL 8.66e-01 0.0105 0.0622 0.662 MAIT L2
ENSG00000162402 USP24 317302 sc-eQTL 9.88e-01 -0.00114 0.0756 0.662 MAIT L2
ENSG00000243725 TTC4 816805 sc-eQTL 5.40e-01 -0.0536 0.0873 0.662 MAIT L2
ENSG00000006555 TTC22 731343 sc-eQTL 4.41e-02 0.193 0.0951 0.656 NK_CD56bright L2
ENSG00000116133 DHCR24 645471 sc-eQTL 8.67e-01 -0.0143 0.0849 0.656 NK_CD56bright L2
ENSG00000162398 LEXM 726603 sc-eQTL 1.57e-01 0.123 0.0865 0.656 NK_CD56bright L2
ENSG00000162402 USP24 317302 sc-eQTL 5.28e-01 0.0472 0.0748 0.656 NK_CD56bright L2
ENSG00000243725 TTC4 816805 sc-eQTL 8.57e-01 -0.017 0.0944 0.656 NK_CD56bright L2
ENSG00000006555 TTC22 731343 sc-eQTL 1.18e-01 0.123 0.0782 0.659 NK_CD56dim L2
ENSG00000116133 DHCR24 645471 sc-eQTL 3.17e-01 -0.0821 0.0819 0.659 NK_CD56dim L2
ENSG00000162398 LEXM 726603 sc-eQTL 1.58e-01 -0.114 0.0803 0.659 NK_CD56dim L2
ENSG00000162402 USP24 317302 sc-eQTL 6.79e-01 0.0213 0.0513 0.659 NK_CD56dim L2
ENSG00000243725 TTC4 816805 sc-eQTL 2.54e-01 -0.1 0.0875 0.659 NK_CD56dim L2
ENSG00000006555 TTC22 731343 sc-eQTL 3.19e-01 0.0926 0.0927 0.651 NK_HLA L2
ENSG00000116133 DHCR24 645471 sc-eQTL 1.64e-01 -0.126 0.0902 0.651 NK_HLA L2
ENSG00000162398 LEXM 726603 sc-eQTL 9.88e-01 0.0013 0.088 0.651 NK_HLA L2
ENSG00000162402 USP24 317302 sc-eQTL 5.99e-02 -0.121 0.064 0.651 NK_HLA L2
ENSG00000243725 TTC4 816805 sc-eQTL 5.69e-01 0.055 0.0964 0.651 NK_HLA L2
ENSG00000006555 TTC22 731343 sc-eQTL 1.81e-01 0.112 0.0835 0.659 NK_cytokine L2
ENSG00000116133 DHCR24 645471 sc-eQTL 8.12e-01 -0.0202 0.0848 0.659 NK_cytokine L2
ENSG00000162398 LEXM 726603 sc-eQTL 7.07e-01 0.0333 0.0884 0.659 NK_cytokine L2
ENSG00000162402 USP24 317302 sc-eQTL 9.12e-01 0.00667 0.0603 0.659 NK_cytokine L2
ENSG00000243725 TTC4 816805 sc-eQTL 4.55e-01 -0.0669 0.0893 0.659 NK_cytokine L2
ENSG00000006555 TTC22 731343 sc-eQTL 4.56e-01 0.0866 0.116 0.659 PB L2
ENSG00000116133 DHCR24 645471 sc-eQTL 6.05e-01 -0.0533 0.103 0.659 PB L2
ENSG00000162402 USP24 317302 sc-eQTL 5.56e-01 -0.0736 0.125 0.659 PB L2
ENSG00000243725 TTC4 816805 sc-eQTL 3.36e-01 0.116 0.12 0.659 PB L2
ENSG00000006555 TTC22 731343 sc-eQTL 9.58e-01 -0.00461 0.0879 0.661 Pro_T L2
ENSG00000116133 DHCR24 645471 sc-eQTL 1.10e-01 -0.119 0.0743 0.661 Pro_T L2
ENSG00000162402 USP24 317302 sc-eQTL 3.71e-01 -0.0758 0.0847 0.661 Pro_T L2
ENSG00000243725 TTC4 816805 sc-eQTL 6.02e-02 -0.174 0.0923 0.661 Pro_T L2
ENSG00000006555 TTC22 731343 sc-eQTL 9.09e-01 0.00988 0.0865 0.66 Treg L2
ENSG00000162402 USP24 317302 sc-eQTL 1.70e-01 -0.106 0.0766 0.66 Treg L2
ENSG00000243725 TTC4 816805 sc-eQTL 2.47e-02 0.217 0.0958 0.66 Treg L2
ENSG00000116133 DHCR24 645471 sc-eQTL 3.72e-01 -0.0681 0.0761 0.661 cDC L2
ENSG00000162390 ACOT11 990409 sc-eQTL 1.92e-02 -0.195 0.0826 0.661 cDC L2
ENSG00000162402 USP24 317302 sc-eQTL 1.06e-01 0.152 0.0933 0.661 cDC L2
ENSG00000243725 TTC4 816805 sc-eQTL 2.22e-01 -0.118 0.096 0.661 cDC L2
ENSG00000116133 DHCR24 645471 sc-eQTL 5.28e-01 0.0347 0.0548 0.66 cMono_IL1B L2
ENSG00000162402 USP24 317302 sc-eQTL 6.66e-01 0.0269 0.0621 0.66 cMono_IL1B L2
ENSG00000243725 TTC4 816805 sc-eQTL 9.00e-01 -0.012 0.095 0.66 cMono_IL1B L2
ENSG00000116133 DHCR24 645471 sc-eQTL 6.25e-01 0.0252 0.0515 0.66 cMono_S100A L2
ENSG00000162402 USP24 317302 sc-eQTL 3.26e-01 -0.0751 0.0762 0.66 cMono_S100A L2
ENSG00000243725 TTC4 816805 sc-eQTL 3.62e-01 -0.0873 0.0955 0.66 cMono_S100A L2
ENSG00000006555 TTC22 731343 sc-eQTL 5.45e-01 0.0535 0.0881 0.658 gdT L2
ENSG00000116133 DHCR24 645471 sc-eQTL 2.08e-01 -0.124 0.0978 0.658 gdT L2
ENSG00000162402 USP24 317302 sc-eQTL 6.87e-01 0.0381 0.0945 0.658 gdT L2
ENSG00000243725 TTC4 816805 sc-eQTL 4.68e-01 -0.0804 0.11 0.658 gdT L2
ENSG00000116133 DHCR24 645471 sc-eQTL 1.62e-01 0.097 0.069 0.66 intMono L2
ENSG00000162402 USP24 317302 sc-eQTL 5.49e-01 0.053 0.0883 0.66 intMono L2
ENSG00000243725 TTC4 816805 sc-eQTL 4.18e-01 -0.0763 0.094 0.66 intMono L2
ENSG00000116133 DHCR24 645471 sc-eQTL 2.54e-02 0.152 0.0674 0.649 ncMono L2
ENSG00000162402 USP24 317302 sc-eQTL 8.83e-01 0.0114 0.077 0.649 ncMono L2
ENSG00000243725 TTC4 816805 sc-eQTL 4.74e-01 -0.0653 0.091 0.649 ncMono L2
ENSG00000116133 DHCR24 645471 sc-eQTL 2.61e-02 -0.18 0.0803 0.638 pDC L2
ENSG00000162390 ACOT11 990409 sc-eQTL 4.95e-01 -0.0264 0.0387 0.638 pDC L2
ENSG00000162402 USP24 317302 sc-eQTL 5.63e-01 0.0379 0.0654 0.638 pDC L2
ENSG00000243725 TTC4 816805 sc-eQTL 2.22e-01 -0.126 0.103 0.638 pDC L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000006555 TTC22 731343 sc-eQTL 7.04e-01 -0.0337 0.0887 0.66 B_Memory LOneK1K
ENSG00000116133 DHCR24 645471 sc-eQTL 7.52e-01 0.0282 0.089 0.66 B_Memory LOneK1K
ENSG00000162402 USP24 317302 sc-eQTL 4.93e-01 0.0436 0.0635 0.66 B_Memory LOneK1K
ENSG00000243725 TTC4 816805 sc-eQTL 2.84e-01 -0.0939 0.0875 0.66 B_Memory LOneK1K
ENSG00000006555 TTC22 731343 sc-eQTL 4.92e-01 -0.0649 0.0943 0.66 B_Naive LOneK1K
ENSG00000116133 DHCR24 645471 sc-eQTL 7.28e-01 -0.0296 0.085 0.66 B_Naive LOneK1K
ENSG00000162402 USP24 317302 sc-eQTL 6.71e-02 -0.11 0.0598 0.66 B_Naive LOneK1K
ENSG00000243725 TTC4 816805 sc-eQTL 8.69e-01 -0.0148 0.0897 0.66 B_Naive LOneK1K
ENSG00000116133 DHCR24 645471 sc-eQTL 4.04e-01 0.0443 0.053 0.66 CD14_Mono LOneK1K
ENSG00000162402 USP24 317302 sc-eQTL 7.85e-01 -0.0158 0.058 0.66 CD14_Mono LOneK1K
ENSG00000243725 TTC4 816805 sc-eQTL 4.79e-01 -0.0682 0.096 0.66 CD14_Mono LOneK1K
ENSG00000116133 DHCR24 645471 sc-eQTL 6.69e-02 0.119 0.0647 0.657 CD16_Mono LOneK1K
ENSG00000162402 USP24 317302 sc-eQTL 4.49e-01 0.0555 0.0733 0.657 CD16_Mono LOneK1K
ENSG00000243725 TTC4 816805 sc-eQTL 8.00e-02 -0.161 0.0913 0.657 CD16_Mono LOneK1K
ENSG00000006555 TTC22 731343 sc-eQTL 1.12e-01 0.122 0.0763 0.659 NK_CD56dim LOneK1K
ENSG00000116133 DHCR24 645471 sc-eQTL 1.88e-01 -0.105 0.0798 0.659 NK_CD56dim LOneK1K
ENSG00000162398 LEXM 726603 sc-eQTL 3.70e-01 -0.0676 0.0752 0.659 NK_CD56dim LOneK1K
ENSG00000162402 USP24 317302 sc-eQTL 9.66e-01 -0.00206 0.0478 0.659 NK_CD56dim LOneK1K
ENSG00000243725 TTC4 816805 sc-eQTL 4.40e-01 -0.0657 0.0849 0.659 NK_CD56dim LOneK1K

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000169174 PCSK9 493118 pQTL 0.00149 -0.0895 0.0281 0.0 0.00118 0.343
ENSG00000234810 AL603840.1 203378 eQTL 0.0016 -0.098 0.031 0.00103 0.0 0.361

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000234810 AL603840.1 203378 1.97e-06 2.43e-06 3.51e-07 1.54e-06 4.77e-07 7.75e-07 1.3e-06 6.19e-07 1.72e-06 8.34e-07 1.96e-06 1.29e-06 3.31e-06 9.92e-07 6.94e-07 1.49e-06 9.63e-07 1.85e-06 8.1e-07 1.15e-06 9.29e-07 2.43e-06 1.95e-06 1.07e-06 2.62e-06 1.29e-06 1.21e-06 1.46e-06 1.92e-06 1.79e-06 1.08e-06 3.04e-07 5.03e-07 1.27e-06 9.46e-07 9.23e-07 8.3e-07 4.1e-07 9.58e-07 3.76e-07 2.11e-07 2.89e-06 4.16e-07 1.99e-07 3.14e-07 3.09e-07 6.73e-07 2.25e-07 1.9e-07