logo

Genes within 1Mb (chr1:55523973:T:C):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000006555 TTC22 722650 sc-eQTL 5.09e-01 -0.0574 0.0868 0.66 B L1
ENSG00000116133 DHCR24 636778 sc-eQTL 6.98e-01 -0.0319 0.0822 0.66 B L1
ENSG00000162402 USP24 308609 sc-eQTL 6.96e-01 -0.0196 0.0501 0.66 B L1
ENSG00000243725 TTC4 808112 sc-eQTL 2.89e-01 -0.0892 0.0838 0.66 B L1
ENSG00000006555 TTC22 722650 sc-eQTL 3.59e-01 -0.0625 0.068 0.66 CD4T L1
ENSG00000162402 USP24 308609 sc-eQTL 4.80e-01 -0.0343 0.0485 0.66 CD4T L1
ENSG00000243725 TTC4 808112 sc-eQTL 8.86e-01 -0.0105 0.073 0.66 CD4T L1
ENSG00000006555 TTC22 722650 sc-eQTL 2.99e-01 0.061 0.0585 0.66 CD8T L1
ENSG00000162402 USP24 308609 sc-eQTL 5.36e-01 -0.03 0.0485 0.66 CD8T L1
ENSG00000243725 TTC4 808112 sc-eQTL 1.33e-02 -0.207 0.083 0.66 CD8T L1
ENSG00000116133 DHCR24 636778 sc-eQTL 1.92e-02 -0.182 0.0771 0.662 DC L1
ENSG00000162390 ACOT11 981716 sc-eQTL 4.32e-02 -0.16 0.0785 0.662 DC L1
ENSG00000162402 USP24 308609 sc-eQTL 2.36e-01 0.0566 0.0477 0.662 DC L1
ENSG00000243725 TTC4 808112 sc-eQTL 3.97e-02 -0.191 0.0921 0.662 DC L1
ENSG00000116133 DHCR24 636778 sc-eQTL 2.02e-01 0.0721 0.0563 0.66 Mono L1
ENSG00000162402 USP24 308609 sc-eQTL 9.56e-01 0.00286 0.0517 0.66 Mono L1
ENSG00000243725 TTC4 808112 sc-eQTL 1.00e-01 -0.149 0.0904 0.66 Mono L1
ENSG00000006555 TTC22 722650 sc-eQTL 2.97e-02 0.169 0.077 0.659 NK L1
ENSG00000116133 DHCR24 636778 sc-eQTL 1.89e-01 -0.103 0.0783 0.659 NK L1
ENSG00000162398 LEXM 717910 sc-eQTL 6.80e-01 -0.0304 0.0735 0.659 NK L1
ENSG00000162402 USP24 308609 sc-eQTL 7.33e-01 0.0152 0.0446 0.659 NK L1
ENSG00000243725 TTC4 808112 sc-eQTL 3.21e-01 -0.0836 0.0841 0.659 NK L1
ENSG00000006555 TTC22 722650 sc-eQTL 7.85e-01 0.0193 0.0706 0.66 Other_T L1
ENSG00000116133 DHCR24 636778 sc-eQTL 1.09e-02 -0.139 0.054 0.66 Other_T L1
ENSG00000162402 USP24 308609 sc-eQTL 4.65e-01 -0.0474 0.0648 0.66 Other_T L1
ENSG00000243725 TTC4 808112 sc-eQTL 1.66e-01 -0.122 0.088 0.66 Other_T L1
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000006555 TTC22 722650 sc-eQTL 3.97e-01 0.0636 0.0749 0.671 B_Activated L2
ENSG00000116133 DHCR24 636778 sc-eQTL 8.39e-03 0.23 0.0864 0.671 B_Activated L2
ENSG00000162402 USP24 308609 sc-eQTL 9.40e-01 0.00719 0.096 0.671 B_Activated L2
ENSG00000243725 TTC4 808112 sc-eQTL 3.89e-01 -0.0792 0.0917 0.671 B_Activated L2
ENSG00000006555 TTC22 722650 sc-eQTL 7.92e-02 -0.166 0.0939 0.661 B_Intermediate L2
ENSG00000116133 DHCR24 636778 sc-eQTL 3.70e-01 0.0787 0.0876 0.661 B_Intermediate L2
ENSG00000162402 USP24 308609 sc-eQTL 1.08e-01 0.111 0.0688 0.661 B_Intermediate L2
ENSG00000243725 TTC4 808112 sc-eQTL 5.22e-02 -0.172 0.0883 0.661 B_Intermediate L2
ENSG00000006555 TTC22 722650 sc-eQTL 3.39e-01 0.0847 0.0884 0.664 B_Memory L2
ENSG00000116133 DHCR24 636778 sc-eQTL 5.99e-01 -0.0463 0.0879 0.664 B_Memory L2
ENSG00000162402 USP24 308609 sc-eQTL 2.66e-01 -0.0806 0.0723 0.664 B_Memory L2
ENSG00000243725 TTC4 808112 sc-eQTL 9.66e-01 0.00399 0.0929 0.664 B_Memory L2
ENSG00000006555 TTC22 722650 sc-eQTL 3.11e-01 -0.0944 0.093 0.66 B_Naive1 L2
ENSG00000116133 DHCR24 636778 sc-eQTL 4.44e-01 -0.0669 0.0873 0.66 B_Naive1 L2
ENSG00000162402 USP24 308609 sc-eQTL 3.13e-02 -0.134 0.062 0.66 B_Naive1 L2
ENSG00000243725 TTC4 808112 sc-eQTL 3.26e-01 0.0838 0.0852 0.66 B_Naive1 L2
ENSG00000006555 TTC22 722650 sc-eQTL 7.72e-01 0.027 0.0929 0.663 B_Naive2 L2
ENSG00000116133 DHCR24 636778 sc-eQTL 8.64e-01 -0.0138 0.0809 0.663 B_Naive2 L2
ENSG00000162402 USP24 308609 sc-eQTL 4.62e-01 0.05 0.0678 0.663 B_Naive2 L2
ENSG00000243725 TTC4 808112 sc-eQTL 3.02e-02 -0.215 0.0983 0.663 B_Naive2 L2
ENSG00000006555 TTC22 722650 sc-eQTL 2.28e-01 0.107 0.0883 0.668 CD4_CTL L2
ENSG00000162402 USP24 308609 sc-eQTL 4.35e-01 0.0673 0.0861 0.668 CD4_CTL L2
ENSG00000243725 TTC4 808112 sc-eQTL 7.80e-01 0.0269 0.0964 0.668 CD4_CTL L2
ENSG00000006555 TTC22 722650 sc-eQTL 2.20e-01 -0.0972 0.079 0.66 CD4_Naive L2
ENSG00000162402 USP24 308609 sc-eQTL 8.33e-01 -0.011 0.052 0.66 CD4_Naive L2
ENSG00000243725 TTC4 808112 sc-eQTL 3.92e-01 -0.068 0.0792 0.66 CD4_Naive L2
ENSG00000006555 TTC22 722650 sc-eQTL 7.50e-01 0.027 0.0845 0.66 CD4_TCM L2
ENSG00000162402 USP24 308609 sc-eQTL 7.60e-01 -0.0194 0.0634 0.66 CD4_TCM L2
ENSG00000243725 TTC4 808112 sc-eQTL 7.63e-01 -0.0276 0.0913 0.66 CD4_TCM L2
ENSG00000006555 TTC22 722650 sc-eQTL 3.07e-01 -0.0997 0.0974 0.66 CD4_TEM L2
ENSG00000162402 USP24 308609 sc-eQTL 2.04e-01 -0.0915 0.0717 0.66 CD4_TEM L2
ENSG00000243725 TTC4 808112 sc-eQTL 9.74e-01 -0.00309 0.0952 0.66 CD4_TEM L2
ENSG00000006555 TTC22 722650 sc-eQTL 3.80e-01 0.0682 0.0775 0.66 CD8_CTL L2
ENSG00000162402 USP24 308609 sc-eQTL 4.52e-02 -0.12 0.0597 0.66 CD8_CTL L2
ENSG00000243725 TTC4 808112 sc-eQTL 6.03e-01 -0.047 0.0901 0.66 CD8_CTL L2
ENSG00000006555 TTC22 722650 sc-eQTL 7.68e-01 0.0255 0.0866 0.66 CD8_Naive L2
ENSG00000162402 USP24 308609 sc-eQTL 4.29e-01 -0.05 0.0631 0.66 CD8_Naive L2
ENSG00000243725 TTC4 808112 sc-eQTL 1.46e-01 -0.134 0.0921 0.66 CD8_Naive L2
ENSG00000006555 TTC22 722650 sc-eQTL 4.98e-01 -0.0636 0.0936 0.669 CD8_TCM L2
ENSG00000162402 USP24 308609 sc-eQTL 7.16e-02 0.142 0.0785 0.669 CD8_TCM L2
ENSG00000243725 TTC4 808112 sc-eQTL 2.78e-01 -0.104 0.096 0.669 CD8_TCM L2
ENSG00000006555 TTC22 722650 sc-eQTL 2.87e-01 0.0962 0.0901 0.66 CD8_TEM L2
ENSG00000162402 USP24 308609 sc-eQTL 1.87e-01 0.121 0.0918 0.66 CD8_TEM L2
ENSG00000243725 TTC4 808112 sc-eQTL 5.83e-01 0.0515 0.0936 0.66 CD8_TEM L2
ENSG00000006555 TTC22 722650 sc-eQTL 2.75e-01 -0.0908 0.083 0.662 MAIT L2
ENSG00000116133 DHCR24 636778 sc-eQTL 6.14e-01 -0.0311 0.0616 0.662 MAIT L2
ENSG00000162402 USP24 308609 sc-eQTL 7.76e-01 -0.0214 0.0749 0.662 MAIT L2
ENSG00000243725 TTC4 808112 sc-eQTL 4.38e-01 -0.0672 0.0865 0.662 MAIT L2
ENSG00000006555 TTC22 722650 sc-eQTL 1.99e-02 0.22 0.0938 0.656 NK_CD56bright L2
ENSG00000116133 DHCR24 636778 sc-eQTL 5.15e-01 -0.0547 0.0839 0.656 NK_CD56bright L2
ENSG00000162398 LEXM 717910 sc-eQTL 1.06e-01 0.139 0.0855 0.656 NK_CD56bright L2
ENSG00000162402 USP24 308609 sc-eQTL 5.11e-01 0.0487 0.074 0.656 NK_CD56bright L2
ENSG00000243725 TTC4 808112 sc-eQTL 7.93e-01 -0.0246 0.0934 0.656 NK_CD56bright L2
ENSG00000006555 TTC22 722650 sc-eQTL 6.56e-02 0.143 0.0775 0.659 NK_CD56dim L2
ENSG00000116133 DHCR24 636778 sc-eQTL 3.82e-01 -0.0712 0.0814 0.659 NK_CD56dim L2
ENSG00000162398 LEXM 717910 sc-eQTL 6.92e-02 -0.145 0.0795 0.659 NK_CD56dim L2
ENSG00000162402 USP24 308609 sc-eQTL 5.93e-01 0.0272 0.0509 0.659 NK_CD56dim L2
ENSG00000243725 TTC4 808112 sc-eQTL 1.96e-01 -0.113 0.0868 0.659 NK_CD56dim L2
ENSG00000006555 TTC22 722650 sc-eQTL 4.12e-01 0.0759 0.0923 0.651 NK_HLA L2
ENSG00000116133 DHCR24 636778 sc-eQTL 2.86e-01 -0.0961 0.0899 0.651 NK_HLA L2
ENSG00000162398 LEXM 717910 sc-eQTL 9.06e-01 0.0103 0.0876 0.651 NK_HLA L2
ENSG00000162402 USP24 308609 sc-eQTL 2.48e-02 -0.144 0.0634 0.651 NK_HLA L2
ENSG00000243725 TTC4 808112 sc-eQTL 5.91e-01 0.0516 0.0959 0.651 NK_HLA L2
ENSG00000006555 TTC22 722650 sc-eQTL 2.57e-01 0.0945 0.0831 0.659 NK_cytokine L2
ENSG00000116133 DHCR24 636778 sc-eQTL 6.39e-01 -0.0396 0.0843 0.659 NK_cytokine L2
ENSG00000162398 LEXM 717910 sc-eQTL 3.96e-01 0.0747 0.0878 0.659 NK_cytokine L2
ENSG00000162402 USP24 308609 sc-eQTL 9.29e-01 0.00538 0.0599 0.659 NK_cytokine L2
ENSG00000243725 TTC4 808112 sc-eQTL 3.25e-01 -0.0874 0.0887 0.659 NK_cytokine L2
ENSG00000006555 TTC22 722650 sc-eQTL 4.28e-01 0.093 0.117 0.656 PB L2
ENSG00000116133 DHCR24 636778 sc-eQTL 5.56e-01 -0.0613 0.104 0.656 PB L2
ENSG00000162402 USP24 308609 sc-eQTL 4.79e-01 -0.0895 0.126 0.656 PB L2
ENSG00000243725 TTC4 808112 sc-eQTL 3.36e-01 0.117 0.122 0.656 PB L2
ENSG00000006555 TTC22 722650 sc-eQTL 8.85e-01 0.0126 0.0872 0.661 Pro_T L2
ENSG00000116133 DHCR24 636778 sc-eQTL 1.24e-01 -0.114 0.0737 0.661 Pro_T L2
ENSG00000162402 USP24 308609 sc-eQTL 3.23e-01 -0.083 0.0839 0.661 Pro_T L2
ENSG00000243725 TTC4 808112 sc-eQTL 1.29e-01 -0.14 0.0918 0.661 Pro_T L2
ENSG00000006555 TTC22 722650 sc-eQTL 7.71e-01 0.025 0.0858 0.66 Treg L2
ENSG00000162402 USP24 308609 sc-eQTL 1.77e-01 -0.103 0.0761 0.66 Treg L2
ENSG00000243725 TTC4 808112 sc-eQTL 3.59e-02 0.201 0.0953 0.66 Treg L2
ENSG00000116133 DHCR24 636778 sc-eQTL 4.46e-01 -0.0576 0.0754 0.661 cDC L2
ENSG00000162390 ACOT11 981716 sc-eQTL 3.15e-02 -0.178 0.082 0.661 cDC L2
ENSG00000162402 USP24 308609 sc-eQTL 7.46e-02 0.166 0.0923 0.661 cDC L2
ENSG00000243725 TTC4 808112 sc-eQTL 1.33e-01 -0.143 0.0949 0.661 cDC L2
ENSG00000116133 DHCR24 636778 sc-eQTL 3.27e-01 0.0536 0.0545 0.66 cMono_IL1B L2
ENSG00000162402 USP24 308609 sc-eQTL 4.71e-01 0.0446 0.0618 0.66 cMono_IL1B L2
ENSG00000243725 TTC4 808112 sc-eQTL 8.30e-01 -0.0203 0.0946 0.66 cMono_IL1B L2
ENSG00000116133 DHCR24 636778 sc-eQTL 5.47e-01 0.0309 0.0513 0.66 cMono_S100A L2
ENSG00000162402 USP24 308609 sc-eQTL 2.45e-01 -0.0886 0.0759 0.66 cMono_S100A L2
ENSG00000243725 TTC4 808112 sc-eQTL 4.29e-01 -0.0755 0.0952 0.66 cMono_S100A L2
ENSG00000006555 TTC22 722650 sc-eQTL 3.93e-01 0.0741 0.0865 0.664 gdT L2
ENSG00000116133 DHCR24 636778 sc-eQTL 1.89e-01 -0.127 0.096 0.664 gdT L2
ENSG00000162402 USP24 308609 sc-eQTL 6.09e-01 0.0476 0.0928 0.664 gdT L2
ENSG00000243725 TTC4 808112 sc-eQTL 4.27e-01 -0.0864 0.109 0.664 gdT L2
ENSG00000116133 DHCR24 636778 sc-eQTL 1.74e-01 0.0939 0.0688 0.66 intMono L2
ENSG00000162402 USP24 308609 sc-eQTL 6.13e-01 0.0446 0.0881 0.66 intMono L2
ENSG00000243725 TTC4 808112 sc-eQTL 5.12e-01 -0.0616 0.0937 0.66 intMono L2
ENSG00000116133 DHCR24 636778 sc-eQTL 2.22e-02 0.154 0.0669 0.649 ncMono L2
ENSG00000162402 USP24 308609 sc-eQTL 7.90e-01 0.0204 0.0765 0.649 ncMono L2
ENSG00000243725 TTC4 808112 sc-eQTL 4.35e-01 -0.0707 0.0904 0.649 ncMono L2
ENSG00000116133 DHCR24 636778 sc-eQTL 6.30e-03 -0.218 0.0785 0.638 pDC L2
ENSG00000162390 ACOT11 981716 sc-eQTL 5.16e-01 -0.0249 0.0382 0.638 pDC L2
ENSG00000162402 USP24 308609 sc-eQTL 6.17e-01 0.0324 0.0645 0.638 pDC L2
ENSG00000243725 TTC4 808112 sc-eQTL 2.98e-01 -0.106 0.102 0.638 pDC L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000006555 TTC22 722650 sc-eQTL 5.89e-01 -0.0476 0.088 0.66 B_Memory LOneK1K
ENSG00000116133 DHCR24 636778 sc-eQTL 6.05e-01 0.0458 0.0883 0.66 B_Memory LOneK1K
ENSG00000162402 USP24 308609 sc-eQTL 4.25e-01 0.0504 0.063 0.66 B_Memory LOneK1K
ENSG00000243725 TTC4 808112 sc-eQTL 1.90e-01 -0.114 0.0867 0.66 B_Memory LOneK1K
ENSG00000006555 TTC22 722650 sc-eQTL 5.62e-01 -0.0545 0.0939 0.66 B_Naive LOneK1K
ENSG00000116133 DHCR24 636778 sc-eQTL 3.35e-01 -0.0816 0.0844 0.66 B_Naive LOneK1K
ENSG00000162402 USP24 308609 sc-eQTL 2.16e-01 -0.0741 0.0597 0.66 B_Naive LOneK1K
ENSG00000243725 TTC4 808112 sc-eQTL 4.84e-01 -0.0625 0.0892 0.66 B_Naive LOneK1K
ENSG00000116133 DHCR24 636778 sc-eQTL 2.92e-01 0.0557 0.0527 0.66 CD14_Mono LOneK1K
ENSG00000162402 USP24 308609 sc-eQTL 8.20e-01 -0.0132 0.0578 0.66 CD14_Mono LOneK1K
ENSG00000243725 TTC4 808112 sc-eQTL 5.39e-01 -0.0588 0.0957 0.66 CD14_Mono LOneK1K
ENSG00000116133 DHCR24 636778 sc-eQTL 6.76e-02 0.118 0.0645 0.657 CD16_Mono LOneK1K
ENSG00000162402 USP24 308609 sc-eQTL 3.92e-01 0.0627 0.073 0.657 CD16_Mono LOneK1K
ENSG00000243725 TTC4 808112 sc-eQTL 8.98e-02 -0.155 0.0911 0.657 CD16_Mono LOneK1K
ENSG00000006555 TTC22 722650 sc-eQTL 1.01e-01 0.125 0.0757 0.659 NK_CD56dim LOneK1K
ENSG00000116133 DHCR24 636778 sc-eQTL 2.06e-01 -0.101 0.0793 0.659 NK_CD56dim LOneK1K
ENSG00000162398 LEXM 717910 sc-eQTL 3.62e-01 -0.0682 0.0746 0.659 NK_CD56dim LOneK1K
ENSG00000162402 USP24 308609 sc-eQTL 9.75e-01 -0.00149 0.0474 0.659 NK_CD56dim LOneK1K
ENSG00000243725 TTC4 808112 sc-eQTL 3.07e-01 -0.0863 0.0842 0.659 NK_CD56dim LOneK1K

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000169174 PCSK9 484425 pQTL 0.00296 -0.0837 0.0281 0.0 0.0 0.335
ENSG00000234810 AL603840.1 194685 eQTL 0.00206 -0.0956 0.0309 0.0 0.0 0.353

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000234810 AL603840.1 194685 2.28e-06 2.61e-06 3.66e-07 1.69e-06 5.79e-07 7.9e-07 1.56e-06 7.37e-07 1.89e-06 9.55e-07 2.11e-06 1.25e-06 3.49e-06 1.11e-06 8.18e-07 1.69e-06 1.1e-06 2.23e-06 1.09e-06 1.3e-06 1.16e-06 2.87e-06 2.13e-06 9.91e-07 3.07e-06 1.08e-06 1.29e-06 1.54e-06 1.95e-06 1.68e-06 1.45e-06 3.78e-07 5.43e-07 1.22e-06 1.03e-06 9.6e-07 7.7e-07 4.13e-07 1.21e-06 3.8e-07 2.54e-07 2.87e-06 4.24e-07 1.99e-07 2.91e-07 3.35e-07 8e-07 2.21e-07 1.54e-07