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Genes within 1Mb (chr1:55521259:G:C):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000006555 TTC22 719936 sc-eQTL 5.57e-01 0.0724 0.123 0.1 B L1
ENSG00000116133 DHCR24 634064 sc-eQTL 1.46e-01 -0.169 0.116 0.1 B L1
ENSG00000162402 USP24 305895 sc-eQTL 3.95e-01 -0.0605 0.071 0.1 B L1
ENSG00000243725 TTC4 805398 sc-eQTL 6.33e-01 -0.0569 0.119 0.1 B L1
ENSG00000006555 TTC22 719936 sc-eQTL 2.69e-01 0.105 0.0947 0.1 CD4T L1
ENSG00000162402 USP24 305895 sc-eQTL 3.34e-01 -0.0653 0.0675 0.1 CD4T L1
ENSG00000243725 TTC4 805398 sc-eQTL 3.54e-01 0.0943 0.102 0.1 CD4T L1
ENSG00000006555 TTC22 719936 sc-eQTL 8.31e-01 0.0178 0.083 0.1 CD8T L1
ENSG00000162402 USP24 305895 sc-eQTL 8.97e-01 -0.00887 0.0686 0.1 CD8T L1
ENSG00000243725 TTC4 805398 sc-eQTL 2.19e-01 -0.146 0.119 0.1 CD8T L1
ENSG00000116133 DHCR24 634064 sc-eQTL 1.74e-01 0.152 0.111 0.104 DC L1
ENSG00000162390 ACOT11 979002 sc-eQTL 1.28e-01 -0.172 0.113 0.104 DC L1
ENSG00000162402 USP24 305895 sc-eQTL 4.27e-01 0.0543 0.0683 0.104 DC L1
ENSG00000243725 TTC4 805398 sc-eQTL 3.51e-01 -0.124 0.133 0.104 DC L1
ENSG00000116133 DHCR24 634064 sc-eQTL 5.77e-01 0.0448 0.0802 0.1 Mono L1
ENSG00000162402 USP24 305895 sc-eQTL 8.07e-01 -0.0179 0.0734 0.1 Mono L1
ENSG00000243725 TTC4 805398 sc-eQTL 8.71e-01 -0.021 0.129 0.1 Mono L1
ENSG00000006555 TTC22 719936 sc-eQTL 1.24e-01 0.168 0.109 0.101 NK L1
ENSG00000116133 DHCR24 634064 sc-eQTL 3.64e-01 -0.101 0.111 0.101 NK L1
ENSG00000162398 LEXM 715196 sc-eQTL 2.25e-01 -0.125 0.103 0.101 NK L1
ENSG00000162402 USP24 305895 sc-eQTL 5.85e-01 0.0343 0.0627 0.101 NK L1
ENSG00000243725 TTC4 805398 sc-eQTL 1.24e-01 -0.182 0.118 0.101 NK L1
ENSG00000006555 TTC22 719936 sc-eQTL 4.14e-01 0.0805 0.0982 0.1 Other_T L1
ENSG00000116133 DHCR24 634064 sc-eQTL 7.84e-01 -0.021 0.0763 0.1 Other_T L1
ENSG00000162402 USP24 305895 sc-eQTL 8.80e-01 -0.0136 0.0904 0.1 Other_T L1
ENSG00000243725 TTC4 805398 sc-eQTL 7.98e-01 0.0315 0.123 0.1 Other_T L1
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000006555 TTC22 719936 sc-eQTL 3.71e-01 -0.0947 0.106 0.099 B_Activated L2
ENSG00000116133 DHCR24 634064 sc-eQTL 4.24e-01 0.0995 0.124 0.099 B_Activated L2
ENSG00000162402 USP24 305895 sc-eQTL 5.83e-01 -0.0743 0.135 0.099 B_Activated L2
ENSG00000243725 TTC4 805398 sc-eQTL 5.41e-01 -0.0792 0.129 0.099 B_Activated L2
ENSG00000006555 TTC22 719936 sc-eQTL 2.77e-02 -0.285 0.129 0.101 B_Intermediate L2
ENSG00000116133 DHCR24 634064 sc-eQTL 5.19e-01 -0.078 0.121 0.101 B_Intermediate L2
ENSG00000162402 USP24 305895 sc-eQTL 5.41e-01 -0.0583 0.0952 0.101 B_Intermediate L2
ENSG00000243725 TTC4 805398 sc-eQTL 8.23e-01 -0.0274 0.123 0.101 B_Intermediate L2
ENSG00000006555 TTC22 719936 sc-eQTL 3.83e-02 0.26 0.125 0.101 B_Memory L2
ENSG00000116133 DHCR24 634064 sc-eQTL 5.06e-01 -0.0832 0.125 0.101 B_Memory L2
ENSG00000162402 USP24 305895 sc-eQTL 2.82e-01 -0.111 0.103 0.101 B_Memory L2
ENSG00000243725 TTC4 805398 sc-eQTL 7.53e-01 0.0416 0.132 0.101 B_Memory L2
ENSG00000006555 TTC22 719936 sc-eQTL 4.01e-01 0.111 0.131 0.1 B_Naive1 L2
ENSG00000116133 DHCR24 634064 sc-eQTL 3.89e-01 -0.106 0.123 0.1 B_Naive1 L2
ENSG00000162402 USP24 305895 sc-eQTL 1.42e-02 -0.216 0.0872 0.1 B_Naive1 L2
ENSG00000243725 TTC4 805398 sc-eQTL 8.17e-01 0.028 0.12 0.1 B_Naive1 L2
ENSG00000006555 TTC22 719936 sc-eQTL 1.03e-01 0.214 0.131 0.101 B_Naive2 L2
ENSG00000116133 DHCR24 634064 sc-eQTL 9.28e-01 -0.0104 0.115 0.101 B_Naive2 L2
ENSG00000162402 USP24 305895 sc-eQTL 5.54e-01 0.057 0.0962 0.101 B_Naive2 L2
ENSG00000243725 TTC4 805398 sc-eQTL 4.11e-01 -0.116 0.141 0.101 B_Naive2 L2
ENSG00000006555 TTC22 719936 sc-eQTL 3.05e-01 -0.126 0.123 0.105 CD4_CTL L2
ENSG00000162402 USP24 305895 sc-eQTL 4.69e-01 0.0865 0.119 0.105 CD4_CTL L2
ENSG00000243725 TTC4 805398 sc-eQTL 6.12e-01 -0.0679 0.134 0.105 CD4_CTL L2
ENSG00000006555 TTC22 719936 sc-eQTL 2.37e-01 0.132 0.111 0.1 CD4_Naive L2
ENSG00000162402 USP24 305895 sc-eQTL 9.44e-01 0.00511 0.0733 0.1 CD4_Naive L2
ENSG00000243725 TTC4 805398 sc-eQTL 9.92e-01 0.0011 0.112 0.1 CD4_Naive L2
ENSG00000006555 TTC22 719936 sc-eQTL 1.87e-01 0.155 0.117 0.1 CD4_TCM L2
ENSG00000162402 USP24 305895 sc-eQTL 2.14e-01 -0.109 0.0876 0.1 CD4_TCM L2
ENSG00000243725 TTC4 805398 sc-eQTL 2.92e-01 0.134 0.126 0.1 CD4_TCM L2
ENSG00000006555 TTC22 719936 sc-eQTL 9.29e-01 0.0122 0.137 0.1 CD4_TEM L2
ENSG00000162402 USP24 305895 sc-eQTL 3.44e-01 -0.0955 0.101 0.1 CD4_TEM L2
ENSG00000243725 TTC4 805398 sc-eQTL 9.27e-01 -0.0122 0.133 0.1 CD4_TEM L2
ENSG00000006555 TTC22 719936 sc-eQTL 8.04e-01 -0.0271 0.109 0.1 CD8_CTL L2
ENSG00000162402 USP24 305895 sc-eQTL 7.24e-01 -0.0299 0.0845 0.1 CD8_CTL L2
ENSG00000243725 TTC4 805398 sc-eQTL 5.43e-01 0.077 0.126 0.1 CD8_CTL L2
ENSG00000006555 TTC22 719936 sc-eQTL 2.22e-01 0.148 0.12 0.1 CD8_Naive L2
ENSG00000162402 USP24 305895 sc-eQTL 5.25e-01 -0.0562 0.0882 0.1 CD8_Naive L2
ENSG00000243725 TTC4 805398 sc-eQTL 2.78e-01 -0.14 0.129 0.1 CD8_Naive L2
ENSG00000006555 TTC22 719936 sc-eQTL 3.74e-01 0.114 0.128 0.106 CD8_TCM L2
ENSG00000162402 USP24 305895 sc-eQTL 2.28e-02 -0.244 0.106 0.106 CD8_TCM L2
ENSG00000243725 TTC4 805398 sc-eQTL 2.39e-01 -0.154 0.131 0.106 CD8_TCM L2
ENSG00000006555 TTC22 719936 sc-eQTL 6.06e-01 0.0683 0.132 0.096 CD8_TEM L2
ENSG00000162402 USP24 305895 sc-eQTL 6.58e-01 0.0598 0.135 0.096 CD8_TEM L2
ENSG00000243725 TTC4 805398 sc-eQTL 8.89e-01 0.0191 0.137 0.096 CD8_TEM L2
ENSG00000006555 TTC22 719936 sc-eQTL 8.79e-01 -0.0178 0.117 0.102 MAIT L2
ENSG00000116133 DHCR24 634064 sc-eQTL 6.17e-01 -0.0433 0.0865 0.102 MAIT L2
ENSG00000162402 USP24 305895 sc-eQTL 6.43e-01 -0.0489 0.105 0.102 MAIT L2
ENSG00000243725 TTC4 805398 sc-eQTL 5.52e-01 0.0724 0.122 0.102 MAIT L2
ENSG00000006555 TTC22 719936 sc-eQTL 7.36e-01 0.0465 0.138 0.096 NK_CD56bright L2
ENSG00000116133 DHCR24 634064 sc-eQTL 9.35e-01 -0.00994 0.122 0.096 NK_CD56bright L2
ENSG00000162398 LEXM 715196 sc-eQTL 6.82e-01 0.0513 0.125 0.096 NK_CD56bright L2
ENSG00000162402 USP24 305895 sc-eQTL 8.69e-01 -0.0177 0.107 0.096 NK_CD56bright L2
ENSG00000243725 TTC4 805398 sc-eQTL 2.96e-01 -0.142 0.135 0.096 NK_CD56bright L2
ENSG00000006555 TTC22 719936 sc-eQTL 6.90e-01 0.0447 0.112 0.099 NK_CD56dim L2
ENSG00000116133 DHCR24 634064 sc-eQTL 4.14e-01 -0.0954 0.117 0.099 NK_CD56dim L2
ENSG00000162398 LEXM 715196 sc-eQTL 1.61e-01 -0.161 0.114 0.099 NK_CD56dim L2
ENSG00000162402 USP24 305895 sc-eQTL 1.44e-01 0.106 0.0726 0.099 NK_CD56dim L2
ENSG00000243725 TTC4 805398 sc-eQTL 8.49e-02 -0.215 0.124 0.099 NK_CD56dim L2
ENSG00000006555 TTC22 719936 sc-eQTL 2.11e-01 0.163 0.13 0.103 NK_HLA L2
ENSG00000116133 DHCR24 634064 sc-eQTL 1.31e-01 -0.192 0.126 0.103 NK_HLA L2
ENSG00000162398 LEXM 715196 sc-eQTL 9.17e-01 -0.0128 0.123 0.103 NK_HLA L2
ENSG00000162402 USP24 305895 sc-eQTL 1.44e-01 -0.132 0.09 0.103 NK_HLA L2
ENSG00000243725 TTC4 805398 sc-eQTL 4.84e-01 0.0947 0.135 0.103 NK_HLA L2
ENSG00000006555 TTC22 719936 sc-eQTL 3.28e-01 0.115 0.118 0.099 NK_cytokine L2
ENSG00000116133 DHCR24 634064 sc-eQTL 8.98e-01 0.0153 0.119 0.099 NK_cytokine L2
ENSG00000162398 LEXM 715196 sc-eQTL 7.46e-01 -0.0404 0.124 0.099 NK_cytokine L2
ENSG00000162402 USP24 305895 sc-eQTL 3.95e-01 0.0722 0.0846 0.099 NK_cytokine L2
ENSG00000243725 TTC4 805398 sc-eQTL 6.36e-01 -0.0596 0.126 0.099 NK_cytokine L2
ENSG00000006555 TTC22 719936 sc-eQTL 4.47e-01 -0.129 0.169 0.093 PB L2
ENSG00000116133 DHCR24 634064 sc-eQTL 7.28e-01 0.0523 0.15 0.093 PB L2
ENSG00000162402 USP24 305895 sc-eQTL 9.19e-02 0.305 0.18 0.093 PB L2
ENSG00000243725 TTC4 805398 sc-eQTL 2.05e-01 -0.223 0.175 0.093 PB L2
ENSG00000006555 TTC22 719936 sc-eQTL 3.74e-01 0.108 0.121 0.1 Pro_T L2
ENSG00000116133 DHCR24 634064 sc-eQTL 5.81e-01 0.0569 0.103 0.1 Pro_T L2
ENSG00000162402 USP24 305895 sc-eQTL 3.90e-02 0.24 0.116 0.1 Pro_T L2
ENSG00000243725 TTC4 805398 sc-eQTL 2.17e-01 -0.158 0.128 0.1 Pro_T L2
ENSG00000006555 TTC22 719936 sc-eQTL 6.29e-01 -0.0573 0.119 0.1 Treg L2
ENSG00000162402 USP24 305895 sc-eQTL 8.89e-02 -0.179 0.105 0.1 Treg L2
ENSG00000243725 TTC4 805398 sc-eQTL 1.08e-01 0.214 0.132 0.1 Treg L2
ENSG00000116133 DHCR24 634064 sc-eQTL 3.96e-01 0.0929 0.109 0.102 cDC L2
ENSG00000162390 ACOT11 979002 sc-eQTL 1.79e-01 -0.161 0.12 0.102 cDC L2
ENSG00000162402 USP24 305895 sc-eQTL 4.15e-02 0.274 0.133 0.102 cDC L2
ENSG00000243725 TTC4 805398 sc-eQTL 6.56e-02 -0.254 0.137 0.102 cDC L2
ENSG00000116133 DHCR24 634064 sc-eQTL 8.97e-01 -0.0101 0.0779 0.1 cMono_IL1B L2
ENSG00000162402 USP24 305895 sc-eQTL 8.49e-01 -0.0168 0.0882 0.1 cMono_IL1B L2
ENSG00000243725 TTC4 805398 sc-eQTL 4.31e-01 0.106 0.135 0.1 cMono_IL1B L2
ENSG00000116133 DHCR24 634064 sc-eQTL 1.25e-01 0.112 0.0727 0.1 cMono_S100A L2
ENSG00000162402 USP24 305895 sc-eQTL 2.80e-01 -0.117 0.108 0.1 cMono_S100A L2
ENSG00000243725 TTC4 805398 sc-eQTL 4.27e-01 -0.108 0.136 0.1 cMono_S100A L2
ENSG00000006555 TTC22 719936 sc-eQTL 3.64e-02 0.259 0.122 0.1 gdT L2
ENSG00000116133 DHCR24 634064 sc-eQTL 7.30e-01 0.0479 0.138 0.1 gdT L2
ENSG00000162402 USP24 305895 sc-eQTL 9.29e-01 -0.0119 0.133 0.1 gdT L2
ENSG00000243725 TTC4 805398 sc-eQTL 8.97e-01 -0.0203 0.156 0.1 gdT L2
ENSG00000116133 DHCR24 634064 sc-eQTL 6.16e-01 -0.0484 0.0964 0.102 intMono L2
ENSG00000162402 USP24 305895 sc-eQTL 9.54e-01 0.00716 0.123 0.102 intMono L2
ENSG00000243725 TTC4 805398 sc-eQTL 6.71e-01 0.0557 0.131 0.102 intMono L2
ENSG00000116133 DHCR24 634064 sc-eQTL 3.87e-01 0.0841 0.0971 0.097 ncMono L2
ENSG00000162402 USP24 305895 sc-eQTL 1.62e-01 0.153 0.109 0.097 ncMono L2
ENSG00000243725 TTC4 805398 sc-eQTL 8.70e-01 -0.0212 0.13 0.097 ncMono L2
ENSG00000116133 DHCR24 634064 sc-eQTL 8.09e-01 0.0296 0.122 0.093 pDC L2
ENSG00000162390 ACOT11 979002 sc-eQTL 4.75e-01 0.0415 0.0579 0.093 pDC L2
ENSG00000162402 USP24 305895 sc-eQTL 6.72e-01 0.0415 0.0978 0.093 pDC L2
ENSG00000243725 TTC4 805398 sc-eQTL 7.66e-01 0.046 0.154 0.093 pDC L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000006555 TTC22 719936 sc-eQTL 3.94e-01 -0.107 0.125 0.1 B_Memory LOneK1K
ENSG00000116133 DHCR24 634064 sc-eQTL 2.25e-01 -0.153 0.125 0.1 B_Memory LOneK1K
ENSG00000162402 USP24 305895 sc-eQTL 4.46e-01 -0.0686 0.0898 0.1 B_Memory LOneK1K
ENSG00000243725 TTC4 805398 sc-eQTL 3.63e-01 -0.113 0.124 0.1 B_Memory LOneK1K
ENSG00000006555 TTC22 719936 sc-eQTL 1.16e-01 0.209 0.132 0.1 B_Naive LOneK1K
ENSG00000116133 DHCR24 634064 sc-eQTL 2.19e-01 -0.147 0.119 0.1 B_Naive LOneK1K
ENSG00000162402 USP24 305895 sc-eQTL 1.64e-01 -0.118 0.0844 0.1 B_Naive LOneK1K
ENSG00000243725 TTC4 805398 sc-eQTL 7.36e-01 -0.0427 0.126 0.1 B_Naive LOneK1K
ENSG00000116133 DHCR24 634064 sc-eQTL 4.29e-01 0.0599 0.0755 0.1 CD14_Mono LOneK1K
ENSG00000162402 USP24 305895 sc-eQTL 5.05e-01 -0.0551 0.0826 0.1 CD14_Mono LOneK1K
ENSG00000243725 TTC4 805398 sc-eQTL 8.82e-01 0.0204 0.137 0.1 CD14_Mono LOneK1K
ENSG00000116133 DHCR24 634064 sc-eQTL 8.26e-01 -0.0204 0.0927 0.099 CD16_Mono LOneK1K
ENSG00000162402 USP24 305895 sc-eQTL 4.95e-01 0.0712 0.104 0.099 CD16_Mono LOneK1K
ENSG00000243725 TTC4 805398 sc-eQTL 8.69e-01 0.0215 0.131 0.099 CD16_Mono LOneK1K
ENSG00000006555 TTC22 719936 sc-eQTL 1.92e-01 0.14 0.107 0.099 NK_CD56dim LOneK1K
ENSG00000116133 DHCR24 634064 sc-eQTL 3.13e-01 -0.113 0.112 0.099 NK_CD56dim LOneK1K
ENSG00000162398 LEXM 715196 sc-eQTL 1.67e-01 -0.146 0.105 0.099 NK_CD56dim LOneK1K
ENSG00000162402 USP24 305895 sc-eQTL 4.79e-01 0.0474 0.0669 0.099 NK_CD56dim LOneK1K
ENSG00000243725 TTC4 805398 sc-eQTL 1.59e-01 -0.168 0.119 0.099 NK_CD56dim LOneK1K

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000162399 BSND 523066 pQTL 0.0395 -0.109 0.0527 0.0 0.0 0.0874
ENSG00000184313 MROH7 879505 eQTL 0.011 -0.121 0.0474 0.00171 0.0 0.0839

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina