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Genes within 1Mb (chr1:55519475:G:T):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000006555 TTC22 718152 sc-eQTL 3.81e-01 -0.0757 0.0862 0.359 B L1
ENSG00000116133 DHCR24 632280 sc-eQTL 9.05e-01 0.00971 0.0816 0.359 B L1
ENSG00000162402 USP24 304111 sc-eQTL 9.63e-01 0.00233 0.0498 0.359 B L1
ENSG00000243725 TTC4 803614 sc-eQTL 5.06e-02 -0.163 0.0827 0.359 B L1
ENSG00000006555 TTC22 718152 sc-eQTL 7.52e-02 -0.121 0.0676 0.359 CD4T L1
ENSG00000162402 USP24 304111 sc-eQTL 7.03e-01 -0.0185 0.0485 0.359 CD4T L1
ENSG00000243725 TTC4 803614 sc-eQTL 5.66e-01 -0.0419 0.0729 0.359 CD4T L1
ENSG00000006555 TTC22 718152 sc-eQTL 9.92e-01 0.000582 0.058 0.359 CD8T L1
ENSG00000162402 USP24 304111 sc-eQTL 4.33e-01 -0.0377 0.0479 0.359 CD8T L1
ENSG00000243725 TTC4 803614 sc-eQTL 6.30e-02 -0.154 0.0826 0.359 CD8T L1
ENSG00000116133 DHCR24 632280 sc-eQTL 4.50e-01 -0.0584 0.0773 0.358 DC L1
ENSG00000162390 ACOT11 977218 sc-eQTL 7.63e-01 0.0237 0.0785 0.358 DC L1
ENSG00000162402 USP24 304111 sc-eQTL 7.64e-01 0.0142 0.0473 0.358 DC L1
ENSG00000243725 TTC4 803614 sc-eQTL 6.96e-02 -0.167 0.0913 0.358 DC L1
ENSG00000116133 DHCR24 632280 sc-eQTL 1.31e-01 0.0854 0.0563 0.359 Mono L1
ENSG00000162402 USP24 304111 sc-eQTL 3.11e-01 0.0524 0.0517 0.359 Mono L1
ENSG00000243725 TTC4 803614 sc-eQTL 6.92e-01 -0.0362 0.0912 0.359 Mono L1
ENSG00000006555 TTC22 718152 sc-eQTL 9.27e-01 0.0071 0.0772 0.358 NK L1
ENSG00000116133 DHCR24 632280 sc-eQTL 8.72e-01 -0.0125 0.0779 0.358 NK L1
ENSG00000162398 LEXM 713412 sc-eQTL 7.16e-01 0.0265 0.0728 0.358 NK L1
ENSG00000162402 USP24 304111 sc-eQTL 2.94e-01 -0.0464 0.0441 0.358 NK L1
ENSG00000243725 TTC4 803614 sc-eQTL 6.35e-01 -0.0397 0.0835 0.358 NK L1
ENSG00000006555 TTC22 718152 sc-eQTL 6.05e-01 -0.0356 0.0687 0.359 Other_T L1
ENSG00000116133 DHCR24 632280 sc-eQTL 2.33e-01 -0.0635 0.0531 0.359 Other_T L1
ENSG00000162402 USP24 304111 sc-eQTL 6.72e-01 -0.0268 0.0631 0.359 Other_T L1
ENSG00000243725 TTC4 803614 sc-eQTL 4.33e-01 -0.0675 0.0859 0.359 Other_T L1
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000006555 TTC22 718152 sc-eQTL 3.12e-01 0.0739 0.0728 0.372 B_Activated L2
ENSG00000116133 DHCR24 632280 sc-eQTL 4.58e-01 0.0637 0.0856 0.372 B_Activated L2
ENSG00000162402 USP24 304111 sc-eQTL 4.16e-01 0.076 0.0932 0.372 B_Activated L2
ENSG00000243725 TTC4 803614 sc-eQTL 5.70e-01 -0.0509 0.0893 0.372 B_Activated L2
ENSG00000006555 TTC22 718152 sc-eQTL 3.63e-01 0.084 0.0922 0.358 B_Intermediate L2
ENSG00000116133 DHCR24 632280 sc-eQTL 1.78e-02 0.202 0.0846 0.358 B_Intermediate L2
ENSG00000162402 USP24 304111 sc-eQTL 2.02e-02 0.156 0.0668 0.358 B_Intermediate L2
ENSG00000243725 TTC4 803614 sc-eQTL 7.59e-02 -0.154 0.0864 0.358 B_Intermediate L2
ENSG00000006555 TTC22 718152 sc-eQTL 5.63e-01 -0.0505 0.0871 0.362 B_Memory L2
ENSG00000116133 DHCR24 632280 sc-eQTL 7.36e-01 -0.0292 0.0865 0.362 B_Memory L2
ENSG00000162402 USP24 304111 sc-eQTL 7.12e-02 -0.128 0.0708 0.362 B_Memory L2
ENSG00000243725 TTC4 803614 sc-eQTL 7.22e-01 -0.0326 0.0914 0.362 B_Memory L2
ENSG00000006555 TTC22 718152 sc-eQTL 1.18e-01 -0.143 0.0913 0.359 B_Naive1 L2
ENSG00000116133 DHCR24 632280 sc-eQTL 5.04e-01 -0.0576 0.086 0.359 B_Naive1 L2
ENSG00000162402 USP24 304111 sc-eQTL 4.13e-01 -0.0506 0.0616 0.359 B_Naive1 L2
ENSG00000243725 TTC4 803614 sc-eQTL 3.00e-01 -0.0872 0.0839 0.359 B_Naive1 L2
ENSG00000006555 TTC22 718152 sc-eQTL 5.06e-01 -0.0613 0.0919 0.361 B_Naive2 L2
ENSG00000116133 DHCR24 632280 sc-eQTL 5.06e-01 -0.0533 0.08 0.361 B_Naive2 L2
ENSG00000162402 USP24 304111 sc-eQTL 4.03e-01 0.0563 0.0671 0.361 B_Naive2 L2
ENSG00000243725 TTC4 803614 sc-eQTL 2.64e-01 -0.11 0.0982 0.361 B_Naive2 L2
ENSG00000006555 TTC22 718152 sc-eQTL 5.04e-01 0.0582 0.0869 0.361 CD4_CTL L2
ENSG00000162402 USP24 304111 sc-eQTL 8.91e-01 -0.0117 0.0846 0.361 CD4_CTL L2
ENSG00000243725 TTC4 803614 sc-eQTL 1.08e-01 0.152 0.0941 0.361 CD4_CTL L2
ENSG00000006555 TTC22 718152 sc-eQTL 3.23e-02 -0.17 0.0788 0.359 CD4_Naive L2
ENSG00000162402 USP24 304111 sc-eQTL 7.05e-01 -0.0198 0.0523 0.359 CD4_Naive L2
ENSG00000243725 TTC4 803614 sc-eQTL 7.43e-01 -0.0262 0.0797 0.359 CD4_Naive L2
ENSG00000006555 TTC22 718152 sc-eQTL 6.03e-01 -0.0436 0.0836 0.359 CD4_TCM L2
ENSG00000162402 USP24 304111 sc-eQTL 5.76e-01 0.0351 0.0626 0.359 CD4_TCM L2
ENSG00000243725 TTC4 803614 sc-eQTL 2.47e-01 -0.105 0.09 0.359 CD4_TCM L2
ENSG00000006555 TTC22 718152 sc-eQTL 1.59e-01 -0.136 0.096 0.359 CD4_TEM L2
ENSG00000162402 USP24 304111 sc-eQTL 8.70e-01 0.0117 0.0711 0.359 CD4_TEM L2
ENSG00000243725 TTC4 803614 sc-eQTL 6.59e-02 -0.172 0.0933 0.359 CD4_TEM L2
ENSG00000006555 TTC22 718152 sc-eQTL 3.18e-01 -0.0763 0.0763 0.359 CD8_CTL L2
ENSG00000162402 USP24 304111 sc-eQTL 1.50e-01 -0.0853 0.059 0.359 CD8_CTL L2
ENSG00000243725 TTC4 803614 sc-eQTL 5.77e-01 -0.0495 0.0886 0.359 CD8_CTL L2
ENSG00000006555 TTC22 718152 sc-eQTL 9.09e-01 -0.00975 0.085 0.359 CD8_Naive L2
ENSG00000162402 USP24 304111 sc-eQTL 7.15e-01 0.0227 0.0621 0.359 CD8_Naive L2
ENSG00000243725 TTC4 803614 sc-eQTL 8.36e-01 0.0188 0.0908 0.359 CD8_Naive L2
ENSG00000006555 TTC22 718152 sc-eQTL 2.87e-01 0.0983 0.092 0.356 CD8_TCM L2
ENSG00000162402 USP24 304111 sc-eQTL 1.90e-02 0.182 0.0768 0.356 CD8_TCM L2
ENSG00000243725 TTC4 803614 sc-eQTL 9.15e-01 0.0102 0.0948 0.356 CD8_TCM L2
ENSG00000006555 TTC22 718152 sc-eQTL 7.09e-01 0.0342 0.0914 0.358 CD8_TEM L2
ENSG00000162402 USP24 304111 sc-eQTL 7.67e-01 0.0277 0.0931 0.358 CD8_TEM L2
ENSG00000243725 TTC4 803614 sc-eQTL 9.20e-01 -0.00954 0.0947 0.358 CD8_TEM L2
ENSG00000006555 TTC22 718152 sc-eQTL 2.04e-01 -0.106 0.0829 0.359 MAIT L2
ENSG00000116133 DHCR24 632280 sc-eQTL 4.69e-01 -0.0446 0.0615 0.359 MAIT L2
ENSG00000162402 USP24 304111 sc-eQTL 6.30e-01 -0.0361 0.0749 0.359 MAIT L2
ENSG00000243725 TTC4 803614 sc-eQTL 2.87e-01 -0.0922 0.0863 0.359 MAIT L2
ENSG00000006555 TTC22 718152 sc-eQTL 4.21e-01 0.0773 0.0958 0.36 NK_CD56bright L2
ENSG00000116133 DHCR24 632280 sc-eQTL 7.68e-01 -0.025 0.0847 0.36 NK_CD56bright L2
ENSG00000162398 LEXM 713412 sc-eQTL 1.60e-01 0.122 0.0864 0.36 NK_CD56bright L2
ENSG00000162402 USP24 304111 sc-eQTL 2.70e-01 -0.0824 0.0745 0.36 NK_CD56bright L2
ENSG00000243725 TTC4 803614 sc-eQTL 9.05e-01 0.0113 0.0942 0.36 NK_CD56bright L2
ENSG00000006555 TTC22 718152 sc-eQTL 7.65e-01 0.0233 0.0776 0.36 NK_CD56dim L2
ENSG00000116133 DHCR24 632280 sc-eQTL 7.10e-01 0.0301 0.081 0.36 NK_CD56dim L2
ENSG00000162398 LEXM 713412 sc-eQTL 3.86e-01 -0.069 0.0795 0.36 NK_CD56dim L2
ENSG00000162402 USP24 304111 sc-eQTL 2.50e-01 -0.0582 0.0504 0.36 NK_CD56dim L2
ENSG00000243725 TTC4 803614 sc-eQTL 9.03e-01 -0.0106 0.0866 0.36 NK_CD56dim L2
ENSG00000006555 TTC22 718152 sc-eQTL 9.85e-01 -0.00174 0.0931 0.356 NK_HLA L2
ENSG00000116133 DHCR24 632280 sc-eQTL 7.03e-01 -0.0346 0.0908 0.356 NK_HLA L2
ENSG00000162398 LEXM 713412 sc-eQTL 9.46e-01 0.006 0.0883 0.356 NK_HLA L2
ENSG00000162402 USP24 304111 sc-eQTL 6.24e-01 -0.0318 0.0647 0.356 NK_HLA L2
ENSG00000243725 TTC4 803614 sc-eQTL 7.15e-01 -0.0354 0.0967 0.356 NK_HLA L2
ENSG00000006555 TTC22 718152 sc-eQTL 5.45e-01 0.0504 0.083 0.36 NK_cytokine L2
ENSG00000116133 DHCR24 632280 sc-eQTL 7.94e-01 -0.022 0.084 0.36 NK_cytokine L2
ENSG00000162398 LEXM 713412 sc-eQTL 1.67e-01 0.121 0.0872 0.36 NK_cytokine L2
ENSG00000162402 USP24 304111 sc-eQTL 5.23e-01 -0.0382 0.0597 0.36 NK_cytokine L2
ENSG00000243725 TTC4 803614 sc-eQTL 2.29e-01 -0.107 0.0883 0.36 NK_cytokine L2
ENSG00000006555 TTC22 718152 sc-eQTL 8.23e-01 0.0248 0.11 0.348 PB L2
ENSG00000116133 DHCR24 632280 sc-eQTL 8.35e-01 0.0204 0.0978 0.348 PB L2
ENSG00000162402 USP24 304111 sc-eQTL 3.31e-01 -0.115 0.118 0.348 PB L2
ENSG00000243725 TTC4 803614 sc-eQTL 9.37e-01 0.00912 0.115 0.348 PB L2
ENSG00000006555 TTC22 718152 sc-eQTL 4.21e-01 0.0685 0.0849 0.359 Pro_T L2
ENSG00000116133 DHCR24 632280 sc-eQTL 5.35e-01 -0.0449 0.0722 0.359 Pro_T L2
ENSG00000162402 USP24 304111 sc-eQTL 2.72e-01 -0.0901 0.0818 0.359 Pro_T L2
ENSG00000243725 TTC4 803614 sc-eQTL 7.28e-01 0.0314 0.09 0.359 Pro_T L2
ENSG00000006555 TTC22 718152 sc-eQTL 2.85e-01 0.0899 0.0838 0.359 Treg L2
ENSG00000162402 USP24 304111 sc-eQTL 3.49e-01 -0.0701 0.0747 0.359 Treg L2
ENSG00000243725 TTC4 803614 sc-eQTL 2.25e-01 0.114 0.094 0.359 Treg L2
ENSG00000116133 DHCR24 632280 sc-eQTL 5.71e-01 -0.0433 0.0764 0.361 cDC L2
ENSG00000162390 ACOT11 977218 sc-eQTL 7.29e-01 0.0291 0.084 0.361 cDC L2
ENSG00000162402 USP24 304111 sc-eQTL 6.31e-01 -0.0453 0.0942 0.361 cDC L2
ENSG00000243725 TTC4 803614 sc-eQTL 4.07e-01 0.0802 0.0965 0.361 cDC L2
ENSG00000116133 DHCR24 632280 sc-eQTL 1.06e-01 0.0877 0.054 0.359 cMono_IL1B L2
ENSG00000162402 USP24 304111 sc-eQTL 2.82e-01 0.0662 0.0613 0.359 cMono_IL1B L2
ENSG00000243725 TTC4 803614 sc-eQTL 9.70e-01 0.00358 0.0941 0.359 cMono_IL1B L2
ENSG00000116133 DHCR24 632280 sc-eQTL 8.53e-01 0.00952 0.0514 0.359 cMono_S100A L2
ENSG00000162402 USP24 304111 sc-eQTL 7.05e-01 0.0289 0.0762 0.359 cMono_S100A L2
ENSG00000243725 TTC4 803614 sc-eQTL 6.97e-01 -0.0372 0.0954 0.359 cMono_S100A L2
ENSG00000006555 TTC22 718152 sc-eQTL 7.14e-01 -0.0332 0.0903 0.361 gdT L2
ENSG00000116133 DHCR24 632280 sc-eQTL 1.20e-01 -0.156 0.0998 0.361 gdT L2
ENSG00000162402 USP24 304111 sc-eQTL 1.23e-01 0.149 0.0959 0.361 gdT L2
ENSG00000243725 TTC4 803614 sc-eQTL 4.15e-01 -0.0924 0.113 0.361 gdT L2
ENSG00000116133 DHCR24 632280 sc-eQTL 3.34e-01 0.0664 0.0686 0.36 intMono L2
ENSG00000162402 USP24 304111 sc-eQTL 6.57e-01 0.0389 0.0876 0.36 intMono L2
ENSG00000243725 TTC4 803614 sc-eQTL 5.49e-01 -0.0559 0.0932 0.36 intMono L2
ENSG00000116133 DHCR24 632280 sc-eQTL 1.58e-01 0.097 0.0683 0.351 ncMono L2
ENSG00000162402 USP24 304111 sc-eQTL 8.40e-01 0.0157 0.0775 0.351 ncMono L2
ENSG00000243725 TTC4 803614 sc-eQTL 6.97e-01 0.0357 0.0917 0.351 ncMono L2
ENSG00000116133 DHCR24 632280 sc-eQTL 1.91e-01 -0.106 0.0807 0.353 pDC L2
ENSG00000162390 ACOT11 977218 sc-eQTL 6.66e-01 -0.0167 0.0385 0.353 pDC L2
ENSG00000162402 USP24 304111 sc-eQTL 7.41e-01 0.0215 0.0651 0.353 pDC L2
ENSG00000243725 TTC4 803614 sc-eQTL 4.58e-02 -0.204 0.101 0.353 pDC L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000006555 TTC22 718152 sc-eQTL 4.88e-01 0.0613 0.0883 0.359 B_Memory LOneK1K
ENSG00000116133 DHCR24 632280 sc-eQTL 1.92e-01 0.116 0.0884 0.359 B_Memory LOneK1K
ENSG00000162402 USP24 304111 sc-eQTL 5.05e-01 0.0423 0.0633 0.359 B_Memory LOneK1K
ENSG00000243725 TTC4 803614 sc-eQTL 1.69e-01 -0.12 0.087 0.359 B_Memory LOneK1K
ENSG00000006555 TTC22 718152 sc-eQTL 1.39e-01 -0.137 0.0924 0.359 B_Naive LOneK1K
ENSG00000116133 DHCR24 632280 sc-eQTL 4.65e-01 -0.0612 0.0835 0.359 B_Naive LOneK1K
ENSG00000162402 USP24 304111 sc-eQTL 8.57e-01 -0.0107 0.0592 0.359 B_Naive LOneK1K
ENSG00000243725 TTC4 803614 sc-eQTL 1.06e-01 -0.142 0.0877 0.359 B_Naive LOneK1K
ENSG00000116133 DHCR24 632280 sc-eQTL 1.04e-01 0.0861 0.0527 0.359 CD14_Mono LOneK1K
ENSG00000162402 USP24 304111 sc-eQTL 3.04e-01 0.0597 0.0579 0.359 CD14_Mono LOneK1K
ENSG00000243725 TTC4 803614 sc-eQTL 8.18e-01 0.0221 0.0962 0.359 CD14_Mono LOneK1K
ENSG00000116133 DHCR24 632280 sc-eQTL 2.96e-01 0.0684 0.0653 0.36 CD16_Mono LOneK1K
ENSG00000162402 USP24 304111 sc-eQTL 5.20e-01 0.0474 0.0736 0.36 CD16_Mono LOneK1K
ENSG00000243725 TTC4 803614 sc-eQTL 6.09e-01 -0.0473 0.0923 0.36 CD16_Mono LOneK1K
ENSG00000006555 TTC22 718152 sc-eQTL 9.82e-01 -0.00172 0.0757 0.36 NK_CD56dim LOneK1K
ENSG00000116133 DHCR24 632280 sc-eQTL 9.58e-01 -0.00422 0.0791 0.36 NK_CD56dim LOneK1K
ENSG00000162398 LEXM 713412 sc-eQTL 7.84e-01 0.0204 0.0743 0.36 NK_CD56dim LOneK1K
ENSG00000162402 USP24 304111 sc-eQTL 2.71e-01 -0.0519 0.047 0.36 NK_CD56dim LOneK1K
ENSG00000243725 TTC4 803614 sc-eQTL 4.72e-01 -0.0604 0.0838 0.36 NK_CD56dim LOneK1K

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000169174 PCSK9 479927 pQTL 0.0177 -0.0673 0.0284 0.0 0.0 0.348
ENSG00000234810 AL603840.1 190187 eQTL 0.000991 -0.105 0.0316 0.00433 0.00329 0.34

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000184313 \N 877721 3.62e-07 5.7e-07 5.93e-08 4.39e-07 9.82e-08 1.19e-07 5.28e-07 5.62e-08 4.19e-07 1.65e-07 1.07e-06 2.8e-07 1.49e-06 1.54e-07 2.77e-07 9.35e-08 5.27e-08 2.43e-07 7.29e-08 5.61e-08 1.18e-07 2.63e-07 1.75e-07 3.49e-08 6.87e-07 1.43e-07 1.48e-07 1.95e-07 1.98e-07 3.8e-07 3.38e-07 4.22e-08 3.61e-08 1.21e-07 2.58e-07 3.18e-08 4.06e-08 9.23e-08 6.45e-08 7.78e-08 5.03e-08 1.53e-06 5.21e-08 4.13e-08 3.41e-08 1.59e-08 1.21e-07 3.99e-09 4.79e-08
ENSG00000234810 AL603840.1 190187 2.68e-06 6.3e-06 3.6e-07 4.02e-06 4.77e-07 7.9e-07 4.23e-06 1e-06 4.68e-06 2.97e-06 1.21e-05 2.95e-06 1.15e-05 3.14e-06 1.39e-06 1.84e-06 1.79e-06 2.72e-06 8.58e-07 1.05e-06 1.81e-06 4.9e-06 2.94e-06 8.07e-07 7.98e-06 1.26e-06 1.57e-06 1.72e-06 4.4e-06 4.1e-06 4.53e-06 2.05e-07 3.45e-07 1.58e-06 2e-06 1.01e-06 7.71e-07 4.1e-07 1.18e-06 3.82e-07 3.68e-07 1.92e-05 6.16e-07 1.9e-07 2.87e-07 1.12e-06 2.26e-07 5.95e-08 1.58e-07