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Genes within 1Mb (chr1:55507257:T:C):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000006555 TTC22 705934 sc-eQTL 1.37e-01 -0.133 0.0889 0.72 B L1
ENSG00000116133 DHCR24 620062 sc-eQTL 8.69e-01 -0.014 0.0845 0.72 B L1
ENSG00000162402 USP24 291893 sc-eQTL 5.31e-01 -0.0323 0.0515 0.72 B L1
ENSG00000243725 TTC4 791396 sc-eQTL 5.87e-01 0.047 0.0863 0.72 B L1
ENSG00000006555 TTC22 705934 sc-eQTL 2.43e-01 -0.0823 0.0702 0.72 CD4T L1
ENSG00000162402 USP24 291893 sc-eQTL 1.28e-01 -0.0762 0.0499 0.72 CD4T L1
ENSG00000243725 TTC4 791396 sc-eQTL 7.51e-01 -0.024 0.0755 0.72 CD4T L1
ENSG00000006555 TTC22 705934 sc-eQTL 3.69e-01 0.0549 0.061 0.72 CD8T L1
ENSG00000162402 USP24 291893 sc-eQTL 8.13e-01 -0.0119 0.0505 0.72 CD8T L1
ENSG00000243725 TTC4 791396 sc-eQTL 1.45e-02 -0.213 0.0864 0.72 CD8T L1
ENSG00000116133 DHCR24 620062 sc-eQTL 4.44e-02 -0.161 0.0796 0.718 DC L1
ENSG00000162390 ACOT11 965000 sc-eQTL 5.36e-02 -0.157 0.0808 0.718 DC L1
ENSG00000162402 USP24 291893 sc-eQTL 1.43e-01 0.072 0.0489 0.718 DC L1
ENSG00000243725 TTC4 791396 sc-eQTL 1.56e-01 -0.136 0.0952 0.718 DC L1
ENSG00000116133 DHCR24 620062 sc-eQTL 2.70e-01 0.0646 0.0584 0.72 Mono L1
ENSG00000162402 USP24 291893 sc-eQTL 7.28e-01 -0.0187 0.0536 0.72 Mono L1
ENSG00000243725 TTC4 791396 sc-eQTL 9.67e-02 -0.156 0.0938 0.72 Mono L1
ENSG00000006555 TTC22 705934 sc-eQTL 1.12e-01 0.129 0.0808 0.719 NK L1
ENSG00000116133 DHCR24 620062 sc-eQTL 1.33e-01 -0.123 0.0816 0.719 NK L1
ENSG00000162398 LEXM 701194 sc-eQTL 8.49e-01 0.0147 0.0767 0.719 NK L1
ENSG00000162402 USP24 291893 sc-eQTL 4.43e-01 -0.0357 0.0465 0.719 NK L1
ENSG00000243725 TTC4 791396 sc-eQTL 1.60e-01 -0.124 0.0876 0.719 NK L1
ENSG00000006555 TTC22 705934 sc-eQTL 4.19e-01 -0.0592 0.0732 0.72 Other_T L1
ENSG00000116133 DHCR24 620062 sc-eQTL 6.08e-02 -0.106 0.0564 0.72 Other_T L1
ENSG00000162402 USP24 291893 sc-eQTL 7.42e-01 -0.0222 0.0673 0.72 Other_T L1
ENSG00000243725 TTC4 791396 sc-eQTL 2.50e-02 -0.205 0.0906 0.72 Other_T L1
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000006555 TTC22 705934 sc-eQTL 1.92e-01 0.1 0.0766 0.73 B_Activated L2
ENSG00000116133 DHCR24 620062 sc-eQTL 3.91e-01 0.0775 0.0902 0.73 B_Activated L2
ENSG00000162402 USP24 291893 sc-eQTL 9.41e-01 -0.0073 0.0984 0.73 B_Activated L2
ENSG00000243725 TTC4 791396 sc-eQTL 5.18e-01 -0.061 0.0941 0.73 B_Activated L2
ENSG00000006555 TTC22 705934 sc-eQTL 4.42e-02 -0.194 0.0958 0.721 B_Intermediate L2
ENSG00000116133 DHCR24 620062 sc-eQTL 3.75e-01 0.0796 0.0896 0.721 B_Intermediate L2
ENSG00000162402 USP24 291893 sc-eQTL 4.25e-01 0.0565 0.0707 0.721 B_Intermediate L2
ENSG00000243725 TTC4 791396 sc-eQTL 1.33e-01 -0.137 0.0907 0.721 B_Intermediate L2
ENSG00000006555 TTC22 705934 sc-eQTL 5.22e-01 0.0586 0.0914 0.72 B_Memory L2
ENSG00000116133 DHCR24 620062 sc-eQTL 4.02e-01 -0.0761 0.0907 0.72 B_Memory L2
ENSG00000162402 USP24 291893 sc-eQTL 5.89e-02 -0.141 0.0743 0.72 B_Memory L2
ENSG00000243725 TTC4 791396 sc-eQTL 8.64e-01 0.0164 0.096 0.72 B_Memory L2
ENSG00000006555 TTC22 705934 sc-eQTL 1.87e-01 -0.126 0.0951 0.72 B_Naive1 L2
ENSG00000116133 DHCR24 620062 sc-eQTL 7.20e-01 -0.0321 0.0895 0.72 B_Naive1 L2
ENSG00000162402 USP24 291893 sc-eQTL 6.49e-02 -0.118 0.0637 0.72 B_Naive1 L2
ENSG00000243725 TTC4 791396 sc-eQTL 1.60e-02 0.209 0.0862 0.72 B_Naive1 L2
ENSG00000006555 TTC22 705934 sc-eQTL 7.09e-01 -0.0358 0.0961 0.721 B_Naive2 L2
ENSG00000116133 DHCR24 620062 sc-eQTL 6.70e-01 0.0357 0.0837 0.721 B_Naive2 L2
ENSG00000162402 USP24 291893 sc-eQTL 6.73e-01 0.0297 0.0702 0.721 B_Naive2 L2
ENSG00000243725 TTC4 791396 sc-eQTL 1.78e-01 -0.138 0.102 0.721 B_Naive2 L2
ENSG00000006555 TTC22 705934 sc-eQTL 6.90e-01 0.0367 0.0918 0.725 CD4_CTL L2
ENSG00000162402 USP24 291893 sc-eQTL 8.33e-01 0.0188 0.0892 0.725 CD4_CTL L2
ENSG00000243725 TTC4 791396 sc-eQTL 4.97e-01 0.0679 0.0998 0.725 CD4_CTL L2
ENSG00000006555 TTC22 705934 sc-eQTL 5.92e-01 -0.0444 0.0826 0.72 CD4_Naive L2
ENSG00000162402 USP24 291893 sc-eQTL 4.72e-01 -0.0391 0.0542 0.72 CD4_Naive L2
ENSG00000243725 TTC4 791396 sc-eQTL 3.44e-01 -0.0782 0.0826 0.72 CD4_Naive L2
ENSG00000006555 TTC22 705934 sc-eQTL 1.35e-01 -0.13 0.0866 0.72 CD4_TCM L2
ENSG00000162402 USP24 291893 sc-eQTL 2.35e-01 -0.0775 0.065 0.72 CD4_TCM L2
ENSG00000243725 TTC4 791396 sc-eQTL 8.08e-01 -0.0229 0.094 0.72 CD4_TCM L2
ENSG00000006555 TTC22 705934 sc-eQTL 4.11e-01 -0.0824 0.0999 0.72 CD4_TEM L2
ENSG00000162402 USP24 291893 sc-eQTL 5.49e-01 -0.0443 0.0737 0.72 CD4_TEM L2
ENSG00000243725 TTC4 791396 sc-eQTL 3.02e-01 -0.101 0.0973 0.72 CD4_TEM L2
ENSG00000006555 TTC22 705934 sc-eQTL 7.84e-01 0.0221 0.0807 0.72 CD8_CTL L2
ENSG00000162402 USP24 291893 sc-eQTL 2.74e-01 -0.0685 0.0624 0.72 CD8_CTL L2
ENSG00000243725 TTC4 791396 sc-eQTL 5.18e-01 -0.0606 0.0936 0.72 CD8_CTL L2
ENSG00000006555 TTC22 705934 sc-eQTL 8.12e-01 0.0213 0.0891 0.72 CD8_Naive L2
ENSG00000162402 USP24 291893 sc-eQTL 4.48e-01 -0.0495 0.065 0.72 CD8_Naive L2
ENSG00000243725 TTC4 791396 sc-eQTL 6.56e-02 -0.175 0.0945 0.72 CD8_Naive L2
ENSG00000006555 TTC22 705934 sc-eQTL 6.32e-01 -0.0462 0.0963 0.725 CD8_TCM L2
ENSG00000162402 USP24 291893 sc-eQTL 5.74e-02 0.154 0.0806 0.725 CD8_TCM L2
ENSG00000243725 TTC4 791396 sc-eQTL 9.48e-01 -0.00647 0.099 0.725 CD8_TCM L2
ENSG00000006555 TTC22 705934 sc-eQTL 3.95e-01 0.0813 0.0954 0.724 CD8_TEM L2
ENSG00000162402 USP24 291893 sc-eQTL 6.05e-01 0.0505 0.0974 0.724 CD8_TEM L2
ENSG00000243725 TTC4 791396 sc-eQTL 5.05e-01 0.066 0.0989 0.724 CD8_TEM L2
ENSG00000006555 TTC22 705934 sc-eQTL 1.49e-01 -0.125 0.0864 0.721 MAIT L2
ENSG00000116133 DHCR24 620062 sc-eQTL 6.46e-01 -0.0296 0.0642 0.721 MAIT L2
ENSG00000162402 USP24 291893 sc-eQTL 9.10e-01 0.00883 0.0782 0.721 MAIT L2
ENSG00000243725 TTC4 791396 sc-eQTL 7.03e-01 -0.0344 0.0903 0.721 MAIT L2
ENSG00000006555 TTC22 705934 sc-eQTL 6.10e-03 0.269 0.097 0.718 NK_CD56bright L2
ENSG00000116133 DHCR24 620062 sc-eQTL 7.42e-01 -0.0288 0.0872 0.718 NK_CD56bright L2
ENSG00000162398 LEXM 701194 sc-eQTL 1.50e-01 0.129 0.089 0.718 NK_CD56bright L2
ENSG00000162402 USP24 291893 sc-eQTL 8.15e-01 -0.018 0.0769 0.718 NK_CD56bright L2
ENSG00000243725 TTC4 791396 sc-eQTL 3.80e-01 -0.0853 0.0969 0.718 NK_CD56bright L2
ENSG00000006555 TTC22 705934 sc-eQTL 4.61e-01 0.06 0.0813 0.72 NK_CD56dim L2
ENSG00000116133 DHCR24 620062 sc-eQTL 4.44e-01 -0.0651 0.0848 0.72 NK_CD56dim L2
ENSG00000162398 LEXM 701194 sc-eQTL 2.23e-01 -0.102 0.0832 0.72 NK_CD56dim L2
ENSG00000162402 USP24 291893 sc-eQTL 5.75e-01 -0.0298 0.053 0.72 NK_CD56dim L2
ENSG00000243725 TTC4 791396 sc-eQTL 1.30e-01 -0.137 0.0904 0.72 NK_CD56dim L2
ENSG00000006555 TTC22 705934 sc-eQTL 2.64e-01 0.108 0.0964 0.715 NK_HLA L2
ENSG00000116133 DHCR24 620062 sc-eQTL 5.28e-02 -0.182 0.0934 0.715 NK_HLA L2
ENSG00000162398 LEXM 701194 sc-eQTL 5.70e-01 0.0521 0.0915 0.715 NK_HLA L2
ENSG00000162402 USP24 291893 sc-eQTL 1.24e-02 -0.167 0.0662 0.715 NK_HLA L2
ENSG00000243725 TTC4 791396 sc-eQTL 3.58e-01 0.0923 0.1 0.715 NK_HLA L2
ENSG00000006555 TTC22 705934 sc-eQTL 6.69e-01 0.0372 0.0868 0.72 NK_cytokine L2
ENSG00000116133 DHCR24 620062 sc-eQTL 4.01e-01 -0.0738 0.0877 0.72 NK_cytokine L2
ENSG00000162398 LEXM 701194 sc-eQTL 2.27e-01 0.111 0.0913 0.72 NK_cytokine L2
ENSG00000162402 USP24 291893 sc-eQTL 4.29e-01 -0.0494 0.0623 0.72 NK_cytokine L2
ENSG00000243725 TTC4 791396 sc-eQTL 1.29e-01 -0.14 0.0921 0.72 NK_cytokine L2
ENSG00000006555 TTC22 705934 sc-eQTL 2.62e-01 0.133 0.118 0.719 PB L2
ENSG00000116133 DHCR24 620062 sc-eQTL 4.98e-01 0.0714 0.105 0.719 PB L2
ENSG00000162402 USP24 291893 sc-eQTL 4.21e-01 -0.103 0.127 0.719 PB L2
ENSG00000243725 TTC4 791396 sc-eQTL 5.45e-01 0.0749 0.123 0.719 PB L2
ENSG00000006555 TTC22 705934 sc-eQTL 8.97e-01 0.0119 0.0916 0.72 Pro_T L2
ENSG00000116133 DHCR24 620062 sc-eQTL 3.13e-01 -0.0785 0.0776 0.72 Pro_T L2
ENSG00000162402 USP24 291893 sc-eQTL 1.93e-01 -0.115 0.088 0.72 Pro_T L2
ENSG00000243725 TTC4 791396 sc-eQTL 6.96e-02 -0.175 0.0962 0.72 Pro_T L2
ENSG00000006555 TTC22 705934 sc-eQTL 3.34e-01 0.0849 0.0876 0.72 Treg L2
ENSG00000162402 USP24 291893 sc-eQTL 2.88e-01 -0.0832 0.078 0.72 Treg L2
ENSG00000243725 TTC4 791396 sc-eQTL 1.17e-01 0.154 0.098 0.72 Treg L2
ENSG00000116133 DHCR24 620062 sc-eQTL 4.64e-01 -0.0568 0.0773 0.717 cDC L2
ENSG00000162390 ACOT11 965000 sc-eQTL 1.79e-02 -0.2 0.0837 0.717 cDC L2
ENSG00000162402 USP24 291893 sc-eQTL 1.92e-02 0.222 0.0939 0.717 cDC L2
ENSG00000243725 TTC4 791396 sc-eQTL 2.90e-01 -0.104 0.0975 0.717 cDC L2
ENSG00000116133 DHCR24 620062 sc-eQTL 2.58e-01 0.0642 0.0566 0.72 cMono_IL1B L2
ENSG00000162402 USP24 291893 sc-eQTL 9.96e-01 0.00036 0.0643 0.72 cMono_IL1B L2
ENSG00000243725 TTC4 791396 sc-eQTL 9.93e-01 0.000875 0.0983 0.72 cMono_IL1B L2
ENSG00000116133 DHCR24 620062 sc-eQTL 6.41e-01 0.0248 0.0532 0.72 cMono_S100A L2
ENSG00000162402 USP24 291893 sc-eQTL 7.37e-01 -0.0265 0.0789 0.72 cMono_S100A L2
ENSG00000243725 TTC4 791396 sc-eQTL 1.46e-01 -0.144 0.0983 0.72 cMono_S100A L2
ENSG00000006555 TTC22 705934 sc-eQTL 4.38e-01 0.0708 0.091 0.724 gdT L2
ENSG00000116133 DHCR24 620062 sc-eQTL 5.92e-01 -0.0545 0.102 0.724 gdT L2
ENSG00000162402 USP24 291893 sc-eQTL 4.64e-01 0.0716 0.0975 0.724 gdT L2
ENSG00000243725 TTC4 791396 sc-eQTL 1.89e-01 -0.15 0.114 0.724 gdT L2
ENSG00000116133 DHCR24 620062 sc-eQTL 4.07e-02 0.146 0.071 0.72 intMono L2
ENSG00000162402 USP24 291893 sc-eQTL 5.82e-01 0.0505 0.0914 0.72 intMono L2
ENSG00000243725 TTC4 791396 sc-eQTL 7.81e-01 0.0272 0.0974 0.72 intMono L2
ENSG00000116133 DHCR24 620062 sc-eQTL 2.99e-02 0.153 0.0697 0.713 ncMono L2
ENSG00000162402 USP24 291893 sc-eQTL 5.62e-01 -0.0462 0.0795 0.713 ncMono L2
ENSG00000243725 TTC4 791396 sc-eQTL 5.11e-01 -0.062 0.0941 0.713 ncMono L2
ENSG00000116133 DHCR24 620062 sc-eQTL 1.97e-02 -0.194 0.0822 0.692 pDC L2
ENSG00000162390 ACOT11 965000 sc-eQTL 2.75e-01 -0.0433 0.0396 0.692 pDC L2
ENSG00000162402 USP24 291893 sc-eQTL 9.66e-01 -0.00284 0.0671 0.692 pDC L2
ENSG00000243725 TTC4 791396 sc-eQTL 5.99e-01 -0.0557 0.106 0.692 pDC L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000006555 TTC22 705934 sc-eQTL 2.17e-01 -0.113 0.0911 0.72 B_Memory LOneK1K
ENSG00000116133 DHCR24 620062 sc-eQTL 9.00e-01 -0.0116 0.0917 0.72 B_Memory LOneK1K
ENSG00000162402 USP24 291893 sc-eQTL 6.72e-01 -0.0278 0.0655 0.72 B_Memory LOneK1K
ENSG00000243725 TTC4 791396 sc-eQTL 8.59e-01 -0.0161 0.0904 0.72 B_Memory LOneK1K
ENSG00000006555 TTC22 705934 sc-eQTL 2.21e-01 -0.118 0.0958 0.72 B_Naive LOneK1K
ENSG00000116133 DHCR24 620062 sc-eQTL 9.76e-01 -0.00257 0.0866 0.72 B_Naive LOneK1K
ENSG00000162402 USP24 291893 sc-eQTL 3.09e-01 -0.0624 0.0612 0.72 B_Naive LOneK1K
ENSG00000243725 TTC4 791396 sc-eQTL 3.32e-01 0.0887 0.0912 0.72 B_Naive LOneK1K
ENSG00000116133 DHCR24 620062 sc-eQTL 4.09e-01 0.0454 0.0549 0.72 CD14_Mono LOneK1K
ENSG00000162402 USP24 291893 sc-eQTL 9.07e-01 -0.00701 0.0601 0.72 CD14_Mono LOneK1K
ENSG00000243725 TTC4 791396 sc-eQTL 2.90e-01 -0.105 0.0993 0.72 CD14_Mono LOneK1K
ENSG00000116133 DHCR24 620062 sc-eQTL 2.09e-02 0.154 0.0663 0.718 CD16_Mono LOneK1K
ENSG00000162402 USP24 291893 sc-eQTL 9.57e-01 0.00404 0.0756 0.718 CD16_Mono LOneK1K
ENSG00000243725 TTC4 791396 sc-eQTL 3.10e-01 -0.0962 0.0946 0.718 CD16_Mono LOneK1K
ENSG00000006555 TTC22 705934 sc-eQTL 3.95e-01 0.0678 0.0795 0.72 NK_CD56dim LOneK1K
ENSG00000116133 DHCR24 620062 sc-eQTL 1.45e-01 -0.121 0.0828 0.72 NK_CD56dim LOneK1K
ENSG00000162398 LEXM 701194 sc-eQTL 7.12e-01 -0.0289 0.0782 0.72 NK_CD56dim LOneK1K
ENSG00000162402 USP24 291893 sc-eQTL 2.72e-01 -0.0544 0.0495 0.72 NK_CD56dim LOneK1K
ENSG00000243725 TTC4 791396 sc-eQTL 2.39e-01 -0.104 0.088 0.72 NK_CD56dim LOneK1K

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000169174 PCSK9 467709 pQTL 0.0051 -0.0823 0.0293 0.0 0.0 0.296
ENSG00000234810 AL603840.1 177969 eQTL 9.27e-06 -0.142 0.0319 0.0 0.0 0.309

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000234810 AL603840.1 177969 4.87e-06 9.44e-06 5.62e-07 4.01e-06 1.35e-06 1.54e-06 6.99e-06 1.03e-06 5.09e-06 2.22e-06 6.45e-06 2.97e-06 9.86e-06 2.19e-06 1.02e-06 2.49e-06 1.8e-06 3.36e-06 1.5e-06 1.02e-06 1.39e-06 4.9e-06 4.58e-06 1.87e-06 8.98e-06 1.23e-06 2.49e-06 1.79e-06 4.46e-06 5.44e-06 2.83e-06 4.33e-07 5.68e-07 1.75e-06 2.01e-06 8.88e-07 9.41e-07 4.89e-07 9.31e-07 6.06e-07 1.83e-07 6.09e-06 3.96e-07 1.81e-07 3.79e-07 7.09e-07 8.69e-07 2.23e-07 2.76e-07