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Genes within 1Mb (chr1:55501220:C:G):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000006555 TTC22 699897 sc-eQTL 7.84e-01 0.03 0.109 0.855 B L1
ENSG00000116133 DHCR24 614025 sc-eQTL 3.58e-01 0.095 0.103 0.855 B L1
ENSG00000162402 USP24 285856 sc-eQTL 3.15e-01 0.0633 0.0629 0.855 B L1
ENSG00000243725 TTC4 785359 sc-eQTL 6.74e-01 -0.0445 0.106 0.855 B L1
ENSG00000006555 TTC22 699897 sc-eQTL 3.54e-01 -0.0784 0.0844 0.855 CD4T L1
ENSG00000162402 USP24 285856 sc-eQTL 2.70e-01 0.0664 0.0601 0.855 CD4T L1
ENSG00000243725 TTC4 785359 sc-eQTL 4.56e-01 -0.0676 0.0905 0.855 CD4T L1
ENSG00000006555 TTC22 699897 sc-eQTL 5.15e-01 -0.048 0.0737 0.855 CD8T L1
ENSG00000162402 USP24 285856 sc-eQTL 7.93e-01 0.016 0.061 0.855 CD8T L1
ENSG00000243725 TTC4 785359 sc-eQTL 1.73e-01 0.144 0.105 0.855 CD8T L1
ENSG00000116133 DHCR24 614025 sc-eQTL 4.61e-01 -0.0738 0.0999 0.851 DC L1
ENSG00000162390 ACOT11 958963 sc-eQTL 1.87e-01 0.134 0.101 0.851 DC L1
ENSG00000162402 USP24 285856 sc-eQTL 3.05e-01 -0.0627 0.061 0.851 DC L1
ENSG00000243725 TTC4 785359 sc-eQTL 2.21e-01 0.146 0.119 0.851 DC L1
ENSG00000116133 DHCR24 614025 sc-eQTL 1.74e-01 -0.0964 0.0707 0.855 Mono L1
ENSG00000162402 USP24 285856 sc-eQTL 7.43e-01 0.0213 0.065 0.855 Mono L1
ENSG00000243725 TTC4 785359 sc-eQTL 9.11e-01 -0.0128 0.114 0.855 Mono L1
ENSG00000006555 TTC22 699897 sc-eQTL 4.75e-01 -0.0691 0.0966 0.854 NK L1
ENSG00000116133 DHCR24 614025 sc-eQTL 8.63e-01 -0.0168 0.0976 0.854 NK L1
ENSG00000162398 LEXM 695157 sc-eQTL 5.26e-01 0.058 0.0912 0.854 NK L1
ENSG00000162402 USP24 285856 sc-eQTL 8.70e-01 0.0091 0.0553 0.854 NK L1
ENSG00000243725 TTC4 785359 sc-eQTL 2.50e-01 0.12 0.104 0.854 NK L1
ENSG00000006555 TTC22 699897 sc-eQTL 3.72e-01 -0.0782 0.0874 0.855 Other_T L1
ENSG00000116133 DHCR24 614025 sc-eQTL 6.99e-01 0.0263 0.068 0.855 Other_T L1
ENSG00000162402 USP24 285856 sc-eQTL 5.49e-01 0.0483 0.0805 0.855 Other_T L1
ENSG00000243725 TTC4 785359 sc-eQTL 8.87e-01 0.0156 0.11 0.855 Other_T L1
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000006555 TTC22 699897 sc-eQTL 5.39e-01 0.0572 0.0929 0.857 B_Activated L2
ENSG00000116133 DHCR24 614025 sc-eQTL 5.64e-01 -0.0631 0.109 0.857 B_Activated L2
ENSG00000162402 USP24 285856 sc-eQTL 7.76e-01 -0.0338 0.119 0.857 B_Activated L2
ENSG00000243725 TTC4 785359 sc-eQTL 2.06e-01 0.144 0.113 0.857 B_Activated L2
ENSG00000006555 TTC22 699897 sc-eQTL 6.95e-02 0.21 0.115 0.854 B_Intermediate L2
ENSG00000116133 DHCR24 614025 sc-eQTL 2.78e-01 0.117 0.107 0.854 B_Intermediate L2
ENSG00000162402 USP24 285856 sc-eQTL 3.42e-01 0.0807 0.0847 0.854 B_Intermediate L2
ENSG00000243725 TTC4 785359 sc-eQTL 5.39e-01 0.0671 0.109 0.854 B_Intermediate L2
ENSG00000006555 TTC22 699897 sc-eQTL 1.67e-01 -0.154 0.111 0.853 B_Memory L2
ENSG00000116133 DHCR24 614025 sc-eQTL 5.64e-01 0.0637 0.11 0.853 B_Memory L2
ENSG00000162402 USP24 285856 sc-eQTL 4.89e-01 0.0631 0.0909 0.853 B_Memory L2
ENSG00000243725 TTC4 785359 sc-eQTL 4.65e-01 -0.0853 0.116 0.853 B_Memory L2
ENSG00000006555 TTC22 699897 sc-eQTL 9.91e-01 0.00135 0.116 0.855 B_Naive1 L2
ENSG00000116133 DHCR24 614025 sc-eQTL 7.76e-01 -0.031 0.109 0.855 B_Naive1 L2
ENSG00000162402 USP24 285856 sc-eQTL 2.00e-02 0.181 0.0772 0.855 B_Naive1 L2
ENSG00000243725 TTC4 785359 sc-eQTL 1.03e-01 -0.173 0.106 0.855 B_Naive1 L2
ENSG00000006555 TTC22 699897 sc-eQTL 1.67e-01 -0.161 0.116 0.854 B_Naive2 L2
ENSG00000116133 DHCR24 614025 sc-eQTL 1.86e-01 -0.134 0.101 0.854 B_Naive2 L2
ENSG00000162402 USP24 285856 sc-eQTL 8.58e-01 -0.0152 0.0853 0.854 B_Naive2 L2
ENSG00000243725 TTC4 785359 sc-eQTL 7.12e-01 0.0462 0.125 0.854 B_Naive2 L2
ENSG00000006555 TTC22 699897 sc-eQTL 3.28e-01 0.106 0.108 0.85 CD4_CTL L2
ENSG00000162402 USP24 285856 sc-eQTL 7.00e-01 -0.0405 0.105 0.85 CD4_CTL L2
ENSG00000243725 TTC4 785359 sc-eQTL 4.97e-01 0.0798 0.117 0.85 CD4_CTL L2
ENSG00000006555 TTC22 699897 sc-eQTL 5.50e-01 -0.0595 0.0993 0.855 CD4_Naive L2
ENSG00000162402 USP24 285856 sc-eQTL 7.87e-01 0.0177 0.0653 0.855 CD4_Naive L2
ENSG00000243725 TTC4 785359 sc-eQTL 7.33e-01 0.034 0.0995 0.855 CD4_Naive L2
ENSG00000006555 TTC22 699897 sc-eQTL 2.06e-01 -0.132 0.104 0.855 CD4_TCM L2
ENSG00000162402 USP24 285856 sc-eQTL 4.37e-01 0.0609 0.0782 0.855 CD4_TCM L2
ENSG00000243725 TTC4 785359 sc-eQTL 1.82e-01 -0.15 0.112 0.855 CD4_TCM L2
ENSG00000006555 TTC22 699897 sc-eQTL 8.21e-01 0.0273 0.121 0.855 CD4_TEM L2
ENSG00000162402 USP24 285856 sc-eQTL 1.44e-01 0.13 0.0885 0.855 CD4_TEM L2
ENSG00000243725 TTC4 785359 sc-eQTL 1.00e+00 7.2e-05 0.118 0.855 CD4_TEM L2
ENSG00000006555 TTC22 699897 sc-eQTL 9.67e-01 -0.00401 0.0964 0.855 CD8_CTL L2
ENSG00000162402 USP24 285856 sc-eQTL 7.81e-01 0.0208 0.0748 0.855 CD8_CTL L2
ENSG00000243725 TTC4 785359 sc-eQTL 6.10e-01 -0.0572 0.112 0.855 CD8_CTL L2
ENSG00000006555 TTC22 699897 sc-eQTL 4.18e-01 -0.0873 0.107 0.855 CD8_Naive L2
ENSG00000162402 USP24 285856 sc-eQTL 3.63e-01 0.0715 0.0785 0.855 CD8_Naive L2
ENSG00000243725 TTC4 785359 sc-eQTL 2.33e-01 0.137 0.115 0.855 CD8_Naive L2
ENSG00000006555 TTC22 699897 sc-eQTL 2.54e-01 -0.13 0.114 0.845 CD8_TCM L2
ENSG00000162402 USP24 285856 sc-eQTL 2.42e-01 0.112 0.0959 0.845 CD8_TCM L2
ENSG00000243725 TTC4 785359 sc-eQTL 3.19e-01 0.117 0.117 0.845 CD8_TCM L2
ENSG00000006555 TTC22 699897 sc-eQTL 3.87e-01 -0.102 0.117 0.861 CD8_TEM L2
ENSG00000162402 USP24 285856 sc-eQTL 8.71e-01 -0.0195 0.12 0.861 CD8_TEM L2
ENSG00000243725 TTC4 785359 sc-eQTL 4.66e-01 0.0886 0.121 0.861 CD8_TEM L2
ENSG00000006555 TTC22 699897 sc-eQTL 8.46e-01 -0.0201 0.104 0.855 MAIT L2
ENSG00000116133 DHCR24 614025 sc-eQTL 9.75e-01 0.00242 0.0769 0.855 MAIT L2
ENSG00000162402 USP24 285856 sc-eQTL 4.43e-01 0.0717 0.0934 0.855 MAIT L2
ENSG00000243725 TTC4 785359 sc-eQTL 5.58e-01 -0.0633 0.108 0.855 MAIT L2
ENSG00000006555 TTC22 699897 sc-eQTL 8.58e-01 -0.0216 0.121 0.86 NK_CD56bright L2
ENSG00000116133 DHCR24 614025 sc-eQTL 3.90e-01 -0.0919 0.107 0.86 NK_CD56bright L2
ENSG00000162398 LEXM 695157 sc-eQTL 4.83e-01 -0.0768 0.109 0.86 NK_CD56bright L2
ENSG00000162402 USP24 285856 sc-eQTL 7.24e-01 0.0333 0.0942 0.86 NK_CD56bright L2
ENSG00000243725 TTC4 785359 sc-eQTL 5.99e-01 -0.0626 0.119 0.86 NK_CD56bright L2
ENSG00000006555 TTC22 699897 sc-eQTL 7.61e-01 0.0298 0.0982 0.856 NK_CD56dim L2
ENSG00000116133 DHCR24 614025 sc-eQTL 9.78e-01 -0.00284 0.102 0.856 NK_CD56dim L2
ENSG00000162398 LEXM 695157 sc-eQTL 2.44e-01 0.117 0.1 0.856 NK_CD56dim L2
ENSG00000162402 USP24 285856 sc-eQTL 7.08e-01 -0.024 0.064 0.856 NK_CD56dim L2
ENSG00000243725 TTC4 785359 sc-eQTL 3.71e-02 0.227 0.108 0.856 NK_CD56dim L2
ENSG00000006555 TTC22 699897 sc-eQTL 5.87e-01 -0.0622 0.114 0.849 NK_HLA L2
ENSG00000116133 DHCR24 614025 sc-eQTL 8.60e-01 0.0196 0.111 0.849 NK_HLA L2
ENSG00000162398 LEXM 695157 sc-eQTL 6.03e-01 -0.0564 0.108 0.849 NK_HLA L2
ENSG00000162402 USP24 285856 sc-eQTL 4.02e-01 0.0666 0.0794 0.849 NK_HLA L2
ENSG00000243725 TTC4 785359 sc-eQTL 4.50e-01 -0.0897 0.119 0.849 NK_HLA L2
ENSG00000006555 TTC22 699897 sc-eQTL 4.94e-01 -0.0711 0.104 0.856 NK_cytokine L2
ENSG00000116133 DHCR24 614025 sc-eQTL 7.74e-01 -0.0302 0.105 0.856 NK_cytokine L2
ENSG00000162398 LEXM 695157 sc-eQTL 7.73e-01 0.0317 0.11 0.856 NK_cytokine L2
ENSG00000162402 USP24 285856 sc-eQTL 5.20e-01 -0.0481 0.0747 0.856 NK_cytokine L2
ENSG00000243725 TTC4 785359 sc-eQTL 6.15e-01 0.0559 0.111 0.856 NK_cytokine L2
ENSG00000006555 TTC22 699897 sc-eQTL 7.36e-01 0.0466 0.138 0.852 PB L2
ENSG00000116133 DHCR24 614025 sc-eQTL 9.94e-01 -0.000855 0.122 0.852 PB L2
ENSG00000162402 USP24 285856 sc-eQTL 2.67e-01 -0.164 0.147 0.852 PB L2
ENSG00000243725 TTC4 785359 sc-eQTL 5.80e-01 0.0795 0.143 0.852 PB L2
ENSG00000006555 TTC22 699897 sc-eQTL 7.80e-01 0.031 0.111 0.857 Pro_T L2
ENSG00000116133 DHCR24 614025 sc-eQTL 8.55e-01 -0.0172 0.0942 0.857 Pro_T L2
ENSG00000162402 USP24 285856 sc-eQTL 2.95e-01 -0.112 0.107 0.857 Pro_T L2
ENSG00000243725 TTC4 785359 sc-eQTL 6.72e-02 0.214 0.116 0.857 Pro_T L2
ENSG00000006555 TTC22 699897 sc-eQTL 7.00e-01 0.0407 0.106 0.855 Treg L2
ENSG00000162402 USP24 285856 sc-eQTL 1.40e-01 0.139 0.0935 0.855 Treg L2
ENSG00000243725 TTC4 785359 sc-eQTL 8.81e-02 -0.202 0.118 0.855 Treg L2
ENSG00000116133 DHCR24 614025 sc-eQTL 3.32e-01 -0.0965 0.0993 0.854 cDC L2
ENSG00000162390 ACOT11 958963 sc-eQTL 1.76e-01 0.148 0.109 0.854 cDC L2
ENSG00000162402 USP24 285856 sc-eQTL 1.45e-02 -0.298 0.121 0.854 cDC L2
ENSG00000243725 TTC4 785359 sc-eQTL 7.85e-02 0.221 0.125 0.854 cDC L2
ENSG00000116133 DHCR24 614025 sc-eQTL 5.44e-01 -0.0417 0.0687 0.855 cMono_IL1B L2
ENSG00000162402 USP24 285856 sc-eQTL 7.22e-01 0.0277 0.0778 0.855 cMono_IL1B L2
ENSG00000243725 TTC4 785359 sc-eQTL 4.32e-01 -0.0935 0.119 0.855 cMono_IL1B L2
ENSG00000116133 DHCR24 614025 sc-eQTL 5.89e-02 -0.121 0.0638 0.855 cMono_S100A L2
ENSG00000162402 USP24 285856 sc-eQTL 2.40e-01 0.112 0.095 0.855 cMono_S100A L2
ENSG00000243725 TTC4 785359 sc-eQTL 8.70e-01 0.0195 0.119 0.855 cMono_S100A L2
ENSG00000006555 TTC22 699897 sc-eQTL 9.44e-03 -0.284 0.108 0.852 gdT L2
ENSG00000116133 DHCR24 614025 sc-eQTL 5.51e-01 -0.0737 0.123 0.852 gdT L2
ENSG00000162402 USP24 285856 sc-eQTL 8.67e-01 0.0199 0.118 0.852 gdT L2
ENSG00000243725 TTC4 785359 sc-eQTL 5.13e-01 -0.0907 0.139 0.852 gdT L2
ENSG00000116133 DHCR24 614025 sc-eQTL 6.78e-01 0.036 0.0865 0.853 intMono L2
ENSG00000162402 USP24 285856 sc-eQTL 4.85e-01 -0.077 0.11 0.853 intMono L2
ENSG00000243725 TTC4 785359 sc-eQTL 9.50e-01 -0.00739 0.117 0.853 intMono L2
ENSG00000116133 DHCR24 614025 sc-eQTL 2.48e-01 -0.102 0.0878 0.862 ncMono L2
ENSG00000162402 USP24 285856 sc-eQTL 5.42e-01 -0.0606 0.0993 0.862 ncMono L2
ENSG00000243725 TTC4 785359 sc-eQTL 7.65e-01 0.0352 0.118 0.862 ncMono L2
ENSG00000116133 DHCR24 614025 sc-eQTL 6.04e-01 0.0561 0.108 0.859 pDC L2
ENSG00000162390 ACOT11 958963 sc-eQTL 5.32e-01 -0.0321 0.0513 0.859 pDC L2
ENSG00000162402 USP24 285856 sc-eQTL 8.52e-01 -0.0162 0.0867 0.859 pDC L2
ENSG00000243725 TTC4 785359 sc-eQTL 8.94e-01 0.0182 0.137 0.859 pDC L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000006555 TTC22 699897 sc-eQTL 2.89e-01 0.119 0.112 0.855 B_Memory LOneK1K
ENSG00000116133 DHCR24 614025 sc-eQTL 1.73e-01 0.154 0.112 0.855 B_Memory LOneK1K
ENSG00000162402 USP24 285856 sc-eQTL 7.82e-01 0.0223 0.0805 0.855 B_Memory LOneK1K
ENSG00000243725 TTC4 785359 sc-eQTL 4.55e-01 0.083 0.111 0.855 B_Memory LOneK1K
ENSG00000006555 TTC22 699897 sc-eQTL 6.30e-01 -0.0565 0.117 0.855 B_Naive LOneK1K
ENSG00000116133 DHCR24 614025 sc-eQTL 6.68e-01 -0.0453 0.105 0.855 B_Naive LOneK1K
ENSG00000162402 USP24 285856 sc-eQTL 7.70e-02 0.132 0.0741 0.855 B_Naive LOneK1K
ENSG00000243725 TTC4 785359 sc-eQTL 3.39e-01 -0.106 0.111 0.855 B_Naive LOneK1K
ENSG00000116133 DHCR24 614025 sc-eQTL 1.24e-01 -0.102 0.0663 0.855 CD14_Mono LOneK1K
ENSG00000162402 USP24 285856 sc-eQTL 3.93e-01 0.0623 0.0727 0.855 CD14_Mono LOneK1K
ENSG00000243725 TTC4 785359 sc-eQTL 6.33e-01 -0.0577 0.121 0.855 CD14_Mono LOneK1K
ENSG00000116133 DHCR24 614025 sc-eQTL 8.88e-01 0.0118 0.0834 0.858 CD16_Mono LOneK1K
ENSG00000162402 USP24 285856 sc-eQTL 3.55e-01 -0.0869 0.0937 0.858 CD16_Mono LOneK1K
ENSG00000243725 TTC4 785359 sc-eQTL 7.49e-01 0.0377 0.118 0.858 CD16_Mono LOneK1K
ENSG00000006555 TTC22 699897 sc-eQTL 6.25e-01 -0.0463 0.0947 0.856 NK_CD56dim LOneK1K
ENSG00000116133 DHCR24 614025 sc-eQTL 9.61e-01 -0.00482 0.0989 0.856 NK_CD56dim LOneK1K
ENSG00000162398 LEXM 695157 sc-eQTL 3.14e-01 0.0936 0.0927 0.856 NK_CD56dim LOneK1K
ENSG00000162402 USP24 285856 sc-eQTL 9.45e-01 -0.00406 0.059 0.856 NK_CD56dim LOneK1K
ENSG00000243725 TTC4 785359 sc-eQTL 1.04e-01 0.17 0.104 0.856 NK_CD56dim LOneK1K

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000162399 BSND 503027 pQTL 0.00695 0.114 0.0421 0.00254 0.0 0.15
ENSG00000184313 MROH7 859466 eQTL 0.00311 0.113 0.0381 0.00484 0.0 0.143

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina