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Genes within 1Mb (chr1:55495693:A:T):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000006555 TTC22 694370 sc-eQTL 7.95e-02 -0.152 0.0865 0.712 B L1
ENSG00000116133 DHCR24 608498 sc-eQTL 7.97e-01 -0.0212 0.0824 0.712 B L1
ENSG00000162402 USP24 280329 sc-eQTL 8.34e-01 -0.0106 0.0503 0.712 B L1
ENSG00000243725 TTC4 779832 sc-eQTL 7.49e-01 0.027 0.0842 0.712 B L1
ENSG00000006555 TTC22 694370 sc-eQTL 1.78e-01 -0.0924 0.0684 0.712 CD4T L1
ENSG00000162402 USP24 280329 sc-eQTL 1.42e-01 -0.0718 0.0487 0.712 CD4T L1
ENSG00000243725 TTC4 779832 sc-eQTL 7.24e-01 0.0261 0.0736 0.712 CD4T L1
ENSG00000006555 TTC22 694370 sc-eQTL 5.81e-01 0.033 0.0597 0.712 CD8T L1
ENSG00000162402 USP24 280329 sc-eQTL 8.40e-01 -0.01 0.0494 0.712 CD8T L1
ENSG00000243725 TTC4 779832 sc-eQTL 2.08e-02 -0.197 0.0847 0.712 CD8T L1
ENSG00000116133 DHCR24 608498 sc-eQTL 8.98e-02 -0.134 0.0786 0.709 DC L1
ENSG00000162390 ACOT11 953436 sc-eQTL 1.30e-01 -0.121 0.0799 0.709 DC L1
ENSG00000162402 USP24 280329 sc-eQTL 8.45e-02 0.0834 0.0481 0.709 DC L1
ENSG00000243725 TTC4 779832 sc-eQTL 3.22e-02 -0.201 0.0932 0.709 DC L1
ENSG00000116133 DHCR24 608498 sc-eQTL 2.27e-01 0.0692 0.057 0.712 Mono L1
ENSG00000162402 USP24 280329 sc-eQTL 7.50e-01 0.0167 0.0524 0.712 Mono L1
ENSG00000243725 TTC4 779832 sc-eQTL 2.92e-01 -0.0972 0.0919 0.712 Mono L1
ENSG00000006555 TTC22 694370 sc-eQTL 2.24e-01 0.0967 0.0793 0.71 NK L1
ENSG00000116133 DHCR24 608498 sc-eQTL 1.79e-01 -0.108 0.08 0.71 NK L1
ENSG00000162398 LEXM 689630 sc-eQTL 9.59e-01 -0.00388 0.0751 0.71 NK L1
ENSG00000162402 USP24 280329 sc-eQTL 6.52e-01 -0.0206 0.0455 0.71 NK L1
ENSG00000243725 TTC4 779832 sc-eQTL 2.67e-01 -0.0956 0.0859 0.71 NK L1
ENSG00000006555 TTC22 694370 sc-eQTL 3.23e-01 -0.0704 0.0711 0.712 Other_T L1
ENSG00000116133 DHCR24 608498 sc-eQTL 5.14e-02 -0.107 0.0548 0.712 Other_T L1
ENSG00000162402 USP24 280329 sc-eQTL 4.58e-01 -0.0487 0.0654 0.712 Other_T L1
ENSG00000243725 TTC4 779832 sc-eQTL 2.98e-02 -0.193 0.0882 0.712 Other_T L1
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000006555 TTC22 694370 sc-eQTL 1.59e-01 0.106 0.0747 0.719 B_Activated L2
ENSG00000116133 DHCR24 608498 sc-eQTL 1.54e-01 0.126 0.0877 0.719 B_Activated L2
ENSG00000162402 USP24 280329 sc-eQTL 8.13e-01 -0.0227 0.0961 0.719 B_Activated L2
ENSG00000243725 TTC4 779832 sc-eQTL 1.25e-01 -0.141 0.0914 0.719 B_Activated L2
ENSG00000006555 TTC22 694370 sc-eQTL 2.46e-02 -0.211 0.0933 0.712 B_Intermediate L2
ENSG00000116133 DHCR24 608498 sc-eQTL 4.82e-01 0.0616 0.0875 0.712 B_Intermediate L2
ENSG00000162402 USP24 280329 sc-eQTL 4.88e-01 0.048 0.0691 0.712 B_Intermediate L2
ENSG00000243725 TTC4 779832 sc-eQTL 3.53e-02 -0.186 0.088 0.712 B_Intermediate L2
ENSG00000006555 TTC22 694370 sc-eQTL 5.91e-01 0.0481 0.0893 0.711 B_Memory L2
ENSG00000116133 DHCR24 608498 sc-eQTL 6.39e-01 -0.0417 0.0887 0.711 B_Memory L2
ENSG00000162402 USP24 280329 sc-eQTL 1.95e-02 -0.17 0.0722 0.711 B_Memory L2
ENSG00000243725 TTC4 779832 sc-eQTL 9.32e-01 0.00806 0.0938 0.711 B_Memory L2
ENSG00000006555 TTC22 694370 sc-eQTL 1.13e-01 -0.147 0.0927 0.712 B_Naive1 L2
ENSG00000116133 DHCR24 608498 sc-eQTL 6.36e-01 -0.0414 0.0874 0.712 B_Naive1 L2
ENSG00000162402 USP24 280329 sc-eQTL 1.64e-01 -0.0872 0.0624 0.712 B_Naive1 L2
ENSG00000243725 TTC4 779832 sc-eQTL 7.10e-03 0.228 0.0839 0.712 B_Naive1 L2
ENSG00000006555 TTC22 694370 sc-eQTL 6.55e-01 -0.0418 0.0934 0.712 B_Naive2 L2
ENSG00000116133 DHCR24 608498 sc-eQTL 8.68e-01 0.0135 0.0814 0.712 B_Naive2 L2
ENSG00000162402 USP24 280329 sc-eQTL 5.67e-01 0.0391 0.0683 0.712 B_Naive2 L2
ENSG00000243725 TTC4 779832 sc-eQTL 1.55e-01 -0.142 0.0996 0.712 B_Naive2 L2
ENSG00000006555 TTC22 694370 sc-eQTL 6.78e-01 0.0371 0.0894 0.716 CD4_CTL L2
ENSG00000162402 USP24 280329 sc-eQTL 6.63e-01 0.038 0.0869 0.716 CD4_CTL L2
ENSG00000243725 TTC4 779832 sc-eQTL 4.31e-01 0.0766 0.0972 0.716 CD4_CTL L2
ENSG00000006555 TTC22 694370 sc-eQTL 4.02e-01 -0.0679 0.0808 0.712 CD4_Naive L2
ENSG00000162402 USP24 280329 sc-eQTL 5.74e-01 -0.0299 0.0531 0.712 CD4_Naive L2
ENSG00000243725 TTC4 779832 sc-eQTL 4.60e-01 -0.0598 0.0809 0.712 CD4_Naive L2
ENSG00000006555 TTC22 694370 sc-eQTL 1.75e-01 -0.115 0.0845 0.712 CD4_TCM L2
ENSG00000162402 USP24 280329 sc-eQTL 2.29e-01 -0.0765 0.0634 0.712 CD4_TCM L2
ENSG00000243725 TTC4 779832 sc-eQTL 7.59e-01 0.0281 0.0916 0.712 CD4_TCM L2
ENSG00000006555 TTC22 694370 sc-eQTL 2.63e-01 -0.109 0.0973 0.712 CD4_TEM L2
ENSG00000162402 USP24 280329 sc-eQTL 7.51e-01 -0.0229 0.072 0.712 CD4_TEM L2
ENSG00000243725 TTC4 779832 sc-eQTL 4.86e-01 -0.0664 0.095 0.712 CD4_TEM L2
ENSG00000006555 TTC22 694370 sc-eQTL 9.90e-01 -0.000965 0.0787 0.712 CD8_CTL L2
ENSG00000162402 USP24 280329 sc-eQTL 3.59e-01 -0.0559 0.0609 0.712 CD8_CTL L2
ENSG00000243725 TTC4 779832 sc-eQTL 5.05e-01 -0.0609 0.0912 0.712 CD8_CTL L2
ENSG00000006555 TTC22 694370 sc-eQTL 8.40e-01 0.0176 0.0869 0.712 CD8_Naive L2
ENSG00000162402 USP24 280329 sc-eQTL 3.91e-01 -0.0545 0.0634 0.712 CD8_Naive L2
ENSG00000243725 TTC4 779832 sc-eQTL 7.56e-02 -0.165 0.0922 0.712 CD8_Naive L2
ENSG00000006555 TTC22 694370 sc-eQTL 7.71e-01 -0.0273 0.0937 0.715 CD8_TCM L2
ENSG00000162402 USP24 280329 sc-eQTL 1.13e-02 0.199 0.0778 0.715 CD8_TCM L2
ENSG00000243725 TTC4 779832 sc-eQTL 9.44e-01 -0.00677 0.0962 0.715 CD8_TCM L2
ENSG00000006555 TTC22 694370 sc-eQTL 2.09e-01 0.117 0.0927 0.715 CD8_TEM L2
ENSG00000162402 USP24 280329 sc-eQTL 9.09e-01 -0.0108 0.0949 0.715 CD8_TEM L2
ENSG00000243725 TTC4 779832 sc-eQTL 6.97e-01 0.0376 0.0964 0.715 CD8_TEM L2
ENSG00000006555 TTC22 694370 sc-eQTL 5.79e-02 -0.16 0.0841 0.712 MAIT L2
ENSG00000116133 DHCR24 608498 sc-eQTL 5.50e-01 -0.0376 0.0627 0.712 MAIT L2
ENSG00000162402 USP24 280329 sc-eQTL 9.49e-01 -0.00489 0.0763 0.712 MAIT L2
ENSG00000243725 TTC4 779832 sc-eQTL 5.54e-01 -0.0522 0.0881 0.712 MAIT L2
ENSG00000006555 TTC22 694370 sc-eQTL 3.22e-02 0.205 0.0952 0.709 NK_CD56bright L2
ENSG00000116133 DHCR24 608498 sc-eQTL 5.05e-01 -0.0568 0.085 0.709 NK_CD56bright L2
ENSG00000162398 LEXM 689630 sc-eQTL 1.29e-01 0.132 0.0866 0.709 NK_CD56bright L2
ENSG00000162402 USP24 280329 sc-eQTL 4.39e-01 -0.0581 0.0749 0.709 NK_CD56bright L2
ENSG00000243725 TTC4 779832 sc-eQTL 5.56e-01 -0.0557 0.0945 0.709 NK_CD56bright L2
ENSG00000006555 TTC22 694370 sc-eQTL 6.14e-01 0.0401 0.0795 0.711 NK_CD56dim L2
ENSG00000116133 DHCR24 608498 sc-eQTL 5.63e-01 -0.048 0.0829 0.711 NK_CD56dim L2
ENSG00000162398 LEXM 689630 sc-eQTL 2.56e-01 -0.0926 0.0814 0.711 NK_CD56dim L2
ENSG00000162402 USP24 280329 sc-eQTL 8.22e-01 -0.0117 0.0519 0.711 NK_CD56dim L2
ENSG00000243725 TTC4 779832 sc-eQTL 1.84e-01 -0.118 0.0884 0.711 NK_CD56dim L2
ENSG00000006555 TTC22 694370 sc-eQTL 2.06e-01 0.12 0.0945 0.708 NK_HLA L2
ENSG00000116133 DHCR24 608498 sc-eQTL 7.62e-02 -0.164 0.0918 0.708 NK_HLA L2
ENSG00000162398 LEXM 689630 sc-eQTL 7.62e-01 0.0273 0.0899 0.708 NK_HLA L2
ENSG00000162402 USP24 280329 sc-eQTL 2.72e-02 -0.145 0.0652 0.708 NK_HLA L2
ENSG00000243725 TTC4 779832 sc-eQTL 2.92e-01 0.104 0.0983 0.708 NK_HLA L2
ENSG00000006555 TTC22 694370 sc-eQTL 9.55e-01 0.00482 0.0849 0.711 NK_cytokine L2
ENSG00000116133 DHCR24 608498 sc-eQTL 4.52e-01 -0.0645 0.0857 0.711 NK_cytokine L2
ENSG00000162398 LEXM 689630 sc-eQTL 3.30e-01 0.0872 0.0893 0.711 NK_cytokine L2
ENSG00000162402 USP24 280329 sc-eQTL 6.55e-01 -0.0273 0.061 0.711 NK_cytokine L2
ENSG00000243725 TTC4 779832 sc-eQTL 2.17e-01 -0.112 0.0901 0.711 NK_cytokine L2
ENSG00000006555 TTC22 694370 sc-eQTL 4.66e-01 0.087 0.119 0.715 PB L2
ENSG00000116133 DHCR24 608498 sc-eQTL 4.98e-01 0.0718 0.106 0.715 PB L2
ENSG00000162402 USP24 280329 sc-eQTL 3.73e-01 -0.114 0.128 0.715 PB L2
ENSG00000243725 TTC4 779832 sc-eQTL 3.30e-01 0.121 0.124 0.715 PB L2
ENSG00000006555 TTC22 694370 sc-eQTL 8.18e-01 0.0205 0.0892 0.711 Pro_T L2
ENSG00000116133 DHCR24 608498 sc-eQTL 6.51e-01 -0.0343 0.0758 0.711 Pro_T L2
ENSG00000162402 USP24 280329 sc-eQTL 4.39e-02 -0.173 0.0852 0.711 Pro_T L2
ENSG00000243725 TTC4 779832 sc-eQTL 1.39e-01 -0.14 0.0939 0.711 Pro_T L2
ENSG00000006555 TTC22 694370 sc-eQTL 6.19e-01 0.0426 0.0856 0.712 Treg L2
ENSG00000162402 USP24 280329 sc-eQTL 2.74e-01 -0.0834 0.0761 0.712 Treg L2
ENSG00000243725 TTC4 779832 sc-eQTL 7.85e-02 0.169 0.0954 0.712 Treg L2
ENSG00000116133 DHCR24 608498 sc-eQTL 7.01e-01 -0.0293 0.0763 0.71 cDC L2
ENSG00000162390 ACOT11 953436 sc-eQTL 5.31e-02 -0.162 0.083 0.71 cDC L2
ENSG00000162402 USP24 280329 sc-eQTL 5.49e-03 0.259 0.092 0.71 cDC L2
ENSG00000243725 TTC4 779832 sc-eQTL 1.06e-01 -0.156 0.0958 0.71 cDC L2
ENSG00000116133 DHCR24 608498 sc-eQTL 3.58e-01 0.0509 0.0552 0.712 cMono_IL1B L2
ENSG00000162402 USP24 280329 sc-eQTL 3.76e-01 0.0555 0.0625 0.712 cMono_IL1B L2
ENSG00000243725 TTC4 779832 sc-eQTL 7.43e-01 0.0315 0.0958 0.712 cMono_IL1B L2
ENSG00000116133 DHCR24 608498 sc-eQTL 4.85e-01 0.0364 0.052 0.712 cMono_S100A L2
ENSG00000162402 USP24 280329 sc-eQTL 8.07e-01 -0.0189 0.0772 0.712 cMono_S100A L2
ENSG00000243725 TTC4 779832 sc-eQTL 3.37e-01 -0.0929 0.0965 0.712 cMono_S100A L2
ENSG00000006555 TTC22 694370 sc-eQTL 2.16e-01 0.109 0.088 0.715 gdT L2
ENSG00000116133 DHCR24 608498 sc-eQTL 3.44e-01 -0.0934 0.0983 0.715 gdT L2
ENSG00000162402 USP24 280329 sc-eQTL 4.28e-01 0.0751 0.0945 0.715 gdT L2
ENSG00000243725 TTC4 779832 sc-eQTL 3.60e-01 -0.102 0.111 0.715 gdT L2
ENSG00000116133 DHCR24 608498 sc-eQTL 1.87e-02 0.166 0.0698 0.713 intMono L2
ENSG00000162402 USP24 280329 sc-eQTL 6.75e-01 0.0379 0.0902 0.713 intMono L2
ENSG00000243725 TTC4 779832 sc-eQTL 8.65e-01 0.0163 0.096 0.713 intMono L2
ENSG00000116133 DHCR24 608498 sc-eQTL 3.04e-02 0.148 0.0681 0.704 ncMono L2
ENSG00000162402 USP24 280329 sc-eQTL 5.81e-01 -0.0429 0.0776 0.704 ncMono L2
ENSG00000243725 TTC4 779832 sc-eQTL 5.46e-01 -0.0555 0.0919 0.704 ncMono L2
ENSG00000116133 DHCR24 608498 sc-eQTL 1.15e-02 -0.204 0.0795 0.681 pDC L2
ENSG00000162390 ACOT11 953436 sc-eQTL 2.37e-01 -0.0456 0.0384 0.681 pDC L2
ENSG00000162402 USP24 280329 sc-eQTL 9.73e-01 -0.00217 0.0652 0.681 pDC L2
ENSG00000243725 TTC4 779832 sc-eQTL 4.85e-01 -0.072 0.103 0.681 pDC L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000006555 TTC22 694370 sc-eQTL 1.38e-01 -0.132 0.0889 0.712 B_Memory LOneK1K
ENSG00000116133 DHCR24 608498 sc-eQTL 9.10e-01 0.0102 0.0897 0.712 B_Memory LOneK1K
ENSG00000162402 USP24 280329 sc-eQTL 4.44e-01 -0.049 0.0639 0.712 B_Memory LOneK1K
ENSG00000243725 TTC4 779832 sc-eQTL 4.06e-01 -0.0735 0.0882 0.712 B_Memory LOneK1K
ENSG00000006555 TTC22 694370 sc-eQTL 1.26e-01 -0.143 0.0932 0.712 B_Naive LOneK1K
ENSG00000116133 DHCR24 608498 sc-eQTL 6.48e-01 -0.0386 0.0844 0.712 B_Naive LOneK1K
ENSG00000162402 USP24 280329 sc-eQTL 6.31e-01 -0.0287 0.0598 0.712 B_Naive LOneK1K
ENSG00000243725 TTC4 779832 sc-eQTL 2.51e-01 0.102 0.0888 0.712 B_Naive LOneK1K
ENSG00000116133 DHCR24 608498 sc-eQTL 4.46e-01 0.0409 0.0535 0.712 CD14_Mono LOneK1K
ENSG00000162402 USP24 280329 sc-eQTL 6.34e-01 0.0279 0.0585 0.712 CD14_Mono LOneK1K
ENSG00000243725 TTC4 779832 sc-eQTL 6.62e-01 -0.0425 0.0971 0.712 CD14_Mono LOneK1K
ENSG00000116133 DHCR24 608498 sc-eQTL 9.49e-03 0.169 0.0646 0.709 CD16_Mono LOneK1K
ENSG00000162402 USP24 280329 sc-eQTL 9.61e-01 0.00363 0.0739 0.709 CD16_Mono LOneK1K
ENSG00000243725 TTC4 779832 sc-eQTL 3.55e-01 -0.0858 0.0925 0.709 CD16_Mono LOneK1K
ENSG00000006555 TTC22 694370 sc-eQTL 5.53e-01 0.0463 0.0779 0.711 NK_CD56dim LOneK1K
ENSG00000116133 DHCR24 608498 sc-eQTL 2.13e-01 -0.101 0.0811 0.711 NK_CD56dim LOneK1K
ENSG00000162398 LEXM 689630 sc-eQTL 5.92e-01 -0.0411 0.0765 0.711 NK_CD56dim LOneK1K
ENSG00000162402 USP24 280329 sc-eQTL 5.92e-01 -0.026 0.0485 0.711 NK_CD56dim LOneK1K
ENSG00000243725 TTC4 779832 sc-eQTL 3.74e-01 -0.0768 0.0862 0.711 NK_CD56dim LOneK1K

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000169174 PCSK9 456145 pQTL 0.00809 -0.0782 0.0295 0.0 0.0 0.295
ENSG00000234810 AL603840.1 166405 eQTL 7.1e-06 -0.144 0.032 0.0 0.0 0.307

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000234810 AL603840.1 166405 4.27e-06 4.68e-06 8.34e-07 2.42e-06 1.43e-06 1.35e-06 3.08e-06 9.61e-07 4.55e-06 2.33e-06 4.21e-06 3.31e-06 6.78e-06 1.96e-06 1.35e-06 3.09e-06 2.05e-06 2.75e-06 1.48e-06 1.15e-06 2.95e-06 4.53e-06 3.42e-06 1.39e-06 4.86e-06 1.65e-06 2.59e-06 1.69e-06 4.32e-06 3.86e-06 2.12e-06 4.2e-07 5.47e-07 1.71e-06 2.03e-06 8.84e-07 9.64e-07 4.58e-07 8.94e-07 4.26e-07 6.18e-07 4.88e-06 4.01e-07 1.85e-07 5.01e-07 6.92e-07 9.89e-07 6.45e-07 4.23e-07