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Genes within 1Mb (chr1:55464577:C:T):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000006555 TTC22 663254 sc-eQTL 3.36e-01 -0.0955 0.099 0.203 B L1
ENSG00000116133 DHCR24 577382 sc-eQTL 3.87e-01 0.0813 0.0937 0.203 B L1
ENSG00000162402 USP24 249213 sc-eQTL 3.68e-01 0.0516 0.0572 0.203 B L1
ENSG00000243725 TTC4 748716 sc-eQTL 1.81e-01 0.128 0.0956 0.203 B L1
ENSG00000006555 TTC22 663254 sc-eQTL 6.86e-01 0.0312 0.077 0.203 CD4T L1
ENSG00000162402 USP24 249213 sc-eQTL 4.91e-01 -0.0378 0.0548 0.203 CD4T L1
ENSG00000243725 TTC4 748716 sc-eQTL 7.89e-01 0.0221 0.0825 0.203 CD4T L1
ENSG00000006555 TTC22 663254 sc-eQTL 8.69e-02 0.114 0.0663 0.203 CD8T L1
ENSG00000162402 USP24 249213 sc-eQTL 5.91e-01 0.0297 0.0552 0.203 CD8T L1
ENSG00000243725 TTC4 748716 sc-eQTL 3.38e-01 -0.0918 0.0956 0.203 CD8T L1
ENSG00000116133 DHCR24 577382 sc-eQTL 5.99e-01 -0.0484 0.092 0.198 DC L1
ENSG00000162390 ACOT11 922320 sc-eQTL 1.44e-02 -0.227 0.092 0.198 DC L1
ENSG00000162402 USP24 249213 sc-eQTL 5.76e-01 -0.0315 0.0563 0.198 DC L1
ENSG00000243725 TTC4 748716 sc-eQTL 4.13e-01 0.0897 0.109 0.198 DC L1
ENSG00000116133 DHCR24 577382 sc-eQTL 9.61e-01 -0.00317 0.0644 0.203 Mono L1
ENSG00000162402 USP24 249213 sc-eQTL 7.53e-01 -0.0186 0.059 0.203 Mono L1
ENSG00000243725 TTC4 748716 sc-eQTL 4.21e-01 -0.0836 0.104 0.203 Mono L1
ENSG00000006555 TTC22 663254 sc-eQTL 9.60e-01 0.00451 0.0892 0.204 NK L1
ENSG00000116133 DHCR24 577382 sc-eQTL 9.42e-01 0.00653 0.09 0.204 NK L1
ENSG00000162398 LEXM 658514 sc-eQTL 2.01e-01 -0.107 0.0838 0.204 NK L1
ENSG00000162402 USP24 249213 sc-eQTL 4.08e-01 -0.0422 0.0509 0.204 NK L1
ENSG00000243725 TTC4 748716 sc-eQTL 6.53e-01 -0.0434 0.0965 0.204 NK L1
ENSG00000006555 TTC22 663254 sc-eQTL 6.32e-01 0.0381 0.0794 0.203 Other_T L1
ENSG00000116133 DHCR24 577382 sc-eQTL 1.81e-01 0.0824 0.0613 0.203 Other_T L1
ENSG00000162402 USP24 249213 sc-eQTL 4.31e-01 -0.0575 0.0729 0.203 Other_T L1
ENSG00000243725 TTC4 748716 sc-eQTL 6.85e-01 -0.0403 0.0993 0.203 Other_T L1
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000006555 TTC22 663254 sc-eQTL 2.98e-01 0.0875 0.0838 0.209 B_Activated L2
ENSG00000116133 DHCR24 577382 sc-eQTL 9.44e-01 -0.00691 0.0988 0.209 B_Activated L2
ENSG00000162402 USP24 249213 sc-eQTL 1.17e-01 -0.168 0.107 0.209 B_Activated L2
ENSG00000243725 TTC4 748716 sc-eQTL 1.16e-01 -0.161 0.102 0.209 B_Activated L2
ENSG00000006555 TTC22 663254 sc-eQTL 7.94e-02 -0.19 0.108 0.204 B_Intermediate L2
ENSG00000116133 DHCR24 577382 sc-eQTL 8.82e-01 0.015 0.101 0.204 B_Intermediate L2
ENSG00000162402 USP24 249213 sc-eQTL 3.37e-01 -0.0765 0.0795 0.204 B_Intermediate L2
ENSG00000243725 TTC4 748716 sc-eQTL 1.84e-01 -0.136 0.102 0.204 B_Intermediate L2
ENSG00000006555 TTC22 663254 sc-eQTL 8.60e-01 0.0181 0.102 0.198 B_Memory L2
ENSG00000116133 DHCR24 577382 sc-eQTL 5.41e-01 0.0621 0.101 0.198 B_Memory L2
ENSG00000162402 USP24 249213 sc-eQTL 1.31e-01 -0.126 0.0833 0.198 B_Memory L2
ENSG00000243725 TTC4 748716 sc-eQTL 9.07e-01 0.0126 0.107 0.198 B_Memory L2
ENSG00000006555 TTC22 663254 sc-eQTL 9.31e-01 -0.00918 0.106 0.203 B_Naive1 L2
ENSG00000116133 DHCR24 577382 sc-eQTL 3.80e-01 0.0874 0.0994 0.203 B_Naive1 L2
ENSG00000162402 USP24 249213 sc-eQTL 1.48e-01 0.103 0.071 0.203 B_Naive1 L2
ENSG00000243725 TTC4 748716 sc-eQTL 1.11e-02 0.245 0.0957 0.203 B_Naive1 L2
ENSG00000006555 TTC22 663254 sc-eQTL 4.23e-01 -0.0857 0.107 0.202 B_Naive2 L2
ENSG00000116133 DHCR24 577382 sc-eQTL 5.06e-01 0.062 0.093 0.202 B_Naive2 L2
ENSG00000162402 USP24 249213 sc-eQTL 4.95e-01 0.0534 0.0781 0.202 B_Naive2 L2
ENSG00000243725 TTC4 748716 sc-eQTL 5.02e-01 0.0768 0.114 0.202 B_Naive2 L2
ENSG00000006555 TTC22 663254 sc-eQTL 2.32e-01 -0.119 0.0994 0.207 CD4_CTL L2
ENSG00000162402 USP24 249213 sc-eQTL 3.93e-01 -0.0829 0.0969 0.207 CD4_CTL L2
ENSG00000243725 TTC4 748716 sc-eQTL 7.07e-01 -0.0409 0.109 0.207 CD4_CTL L2
ENSG00000006555 TTC22 663254 sc-eQTL 2.45e-01 0.105 0.0901 0.203 CD4_Naive L2
ENSG00000162402 USP24 249213 sc-eQTL 4.35e-01 -0.0463 0.0593 0.203 CD4_Naive L2
ENSG00000243725 TTC4 748716 sc-eQTL 4.12e-01 -0.0742 0.0903 0.203 CD4_Naive L2
ENSG00000006555 TTC22 663254 sc-eQTL 3.21e-01 -0.0945 0.095 0.203 CD4_TCM L2
ENSG00000162402 USP24 249213 sc-eQTL 9.37e-01 0.00562 0.0714 0.203 CD4_TCM L2
ENSG00000243725 TTC4 748716 sc-eQTL 2.75e-01 0.112 0.103 0.203 CD4_TCM L2
ENSG00000006555 TTC22 663254 sc-eQTL 5.95e-01 0.0585 0.11 0.203 CD4_TEM L2
ENSG00000162402 USP24 249213 sc-eQTL 5.89e-01 -0.0438 0.081 0.203 CD4_TEM L2
ENSG00000243725 TTC4 748716 sc-eQTL 8.71e-01 -0.0175 0.107 0.203 CD4_TEM L2
ENSG00000006555 TTC22 663254 sc-eQTL 6.39e-01 0.0417 0.0887 0.203 CD8_CTL L2
ENSG00000162402 USP24 249213 sc-eQTL 4.58e-01 0.051 0.0687 0.203 CD8_CTL L2
ENSG00000243725 TTC4 748716 sc-eQTL 3.59e-01 0.0944 0.103 0.203 CD8_CTL L2
ENSG00000006555 TTC22 663254 sc-eQTL 2.95e-02 0.214 0.0978 0.203 CD8_Naive L2
ENSG00000162402 USP24 249213 sc-eQTL 2.65e-01 -0.0805 0.072 0.203 CD8_Naive L2
ENSG00000243725 TTC4 748716 sc-eQTL 5.64e-02 -0.201 0.105 0.203 CD8_Naive L2
ENSG00000006555 TTC22 663254 sc-eQTL 4.49e-01 -0.0844 0.111 0.197 CD8_TCM L2
ENSG00000162402 USP24 249213 sc-eQTL 6.28e-01 0.0455 0.0939 0.197 CD8_TCM L2
ENSG00000243725 TTC4 748716 sc-eQTL 5.00e-01 -0.077 0.114 0.197 CD8_TCM L2
ENSG00000006555 TTC22 663254 sc-eQTL 5.14e-01 0.0687 0.105 0.208 CD8_TEM L2
ENSG00000162402 USP24 249213 sc-eQTL 2.15e-01 -0.133 0.107 0.208 CD8_TEM L2
ENSG00000243725 TTC4 748716 sc-eQTL 4.52e-01 0.082 0.109 0.208 CD8_TEM L2
ENSG00000006555 TTC22 663254 sc-eQTL 2.12e-01 0.121 0.0963 0.203 MAIT L2
ENSG00000116133 DHCR24 577382 sc-eQTL 7.16e-01 0.026 0.0715 0.203 MAIT L2
ENSG00000162402 USP24 249213 sc-eQTL 6.16e-01 -0.0436 0.087 0.203 MAIT L2
ENSG00000243725 TTC4 748716 sc-eQTL 6.57e-02 0.185 0.0998 0.203 MAIT L2
ENSG00000006555 TTC22 663254 sc-eQTL 1.46e-01 0.162 0.111 0.202 NK_CD56bright L2
ENSG00000116133 DHCR24 577382 sc-eQTL 2.71e-01 -0.108 0.098 0.202 NK_CD56bright L2
ENSG00000162398 LEXM 658514 sc-eQTL 1.11e-01 -0.16 0.1 0.202 NK_CD56bright L2
ENSG00000162402 USP24 249213 sc-eQTL 4.49e-01 -0.0657 0.0866 0.202 NK_CD56bright L2
ENSG00000243725 TTC4 748716 sc-eQTL 3.95e-01 -0.093 0.109 0.202 NK_CD56bright L2
ENSG00000006555 TTC22 663254 sc-eQTL 3.47e-01 -0.0853 0.0906 0.205 NK_CD56dim L2
ENSG00000116133 DHCR24 577382 sc-eQTL 7.90e-01 -0.0252 0.0947 0.205 NK_CD56dim L2
ENSG00000162398 LEXM 658514 sc-eQTL 1.13e-01 -0.147 0.0926 0.205 NK_CD56dim L2
ENSG00000162402 USP24 249213 sc-eQTL 8.81e-01 -0.00888 0.0592 0.205 NK_CD56dim L2
ENSG00000243725 TTC4 748716 sc-eQTL 9.11e-01 -0.0114 0.101 0.205 NK_CD56dim L2
ENSG00000006555 TTC22 663254 sc-eQTL 3.95e-01 0.0901 0.106 0.208 NK_HLA L2
ENSG00000116133 DHCR24 577382 sc-eQTL 8.22e-02 -0.179 0.103 0.208 NK_HLA L2
ENSG00000162398 LEXM 658514 sc-eQTL 8.53e-01 -0.0187 0.1 0.208 NK_HLA L2
ENSG00000162402 USP24 249213 sc-eQTL 2.20e-01 -0.0903 0.0734 0.208 NK_HLA L2
ENSG00000243725 TTC4 748716 sc-eQTL 4.91e-01 0.0758 0.11 0.208 NK_HLA L2
ENSG00000006555 TTC22 663254 sc-eQTL 5.80e-02 -0.183 0.0957 0.205 NK_cytokine L2
ENSG00000116133 DHCR24 577382 sc-eQTL 6.48e-01 0.0446 0.0976 0.205 NK_cytokine L2
ENSG00000162398 LEXM 658514 sc-eQTL 7.75e-01 0.0291 0.102 0.205 NK_cytokine L2
ENSG00000162402 USP24 249213 sc-eQTL 4.50e-01 -0.0525 0.0693 0.205 NK_cytokine L2
ENSG00000243725 TTC4 748716 sc-eQTL 8.93e-01 -0.0139 0.103 0.205 NK_cytokine L2
ENSG00000006555 TTC22 663254 sc-eQTL 3.65e-01 0.1 0.11 0.222 PB L2
ENSG00000116133 DHCR24 577382 sc-eQTL 5.76e-02 0.185 0.0965 0.222 PB L2
ENSG00000162402 USP24 249213 sc-eQTL 2.04e-01 0.151 0.118 0.222 PB L2
ENSG00000243725 TTC4 748716 sc-eQTL 9.37e-01 -0.00913 0.115 0.222 PB L2
ENSG00000006555 TTC22 663254 sc-eQTL 5.97e-01 0.0516 0.0976 0.202 Pro_T L2
ENSG00000116133 DHCR24 577382 sc-eQTL 2.48e-01 0.0959 0.0827 0.202 Pro_T L2
ENSG00000162402 USP24 249213 sc-eQTL 6.62e-01 0.0412 0.0941 0.202 Pro_T L2
ENSG00000243725 TTC4 748716 sc-eQTL 4.65e-01 -0.0756 0.103 0.202 Pro_T L2
ENSG00000006555 TTC22 663254 sc-eQTL 1.83e-01 0.13 0.097 0.203 Treg L2
ENSG00000162402 USP24 249213 sc-eQTL 3.67e-01 0.0783 0.0866 0.203 Treg L2
ENSG00000243725 TTC4 748716 sc-eQTL 7.07e-01 0.0411 0.109 0.203 Treg L2
ENSG00000116133 DHCR24 577382 sc-eQTL 8.26e-01 -0.0196 0.0893 0.195 cDC L2
ENSG00000162390 ACOT11 922320 sc-eQTL 7.26e-03 -0.261 0.0962 0.195 cDC L2
ENSG00000162402 USP24 249213 sc-eQTL 1.14e-01 0.174 0.109 0.195 cDC L2
ENSG00000243725 TTC4 748716 sc-eQTL 9.66e-01 -0.00489 0.113 0.195 cDC L2
ENSG00000116133 DHCR24 577382 sc-eQTL 6.90e-01 -0.0252 0.063 0.203 cMono_IL1B L2
ENSG00000162402 USP24 249213 sc-eQTL 9.80e-01 -0.00178 0.0713 0.203 cMono_IL1B L2
ENSG00000243725 TTC4 748716 sc-eQTL 7.97e-01 -0.0281 0.109 0.203 cMono_IL1B L2
ENSG00000116133 DHCR24 577382 sc-eQTL 1.44e-01 0.0859 0.0585 0.203 cMono_S100A L2
ENSG00000162402 USP24 249213 sc-eQTL 8.75e-01 -0.0137 0.0871 0.203 cMono_S100A L2
ENSG00000243725 TTC4 748716 sc-eQTL 8.27e-01 0.0239 0.109 0.203 cMono_S100A L2
ENSG00000006555 TTC22 663254 sc-eQTL 1.12e-01 0.17 0.106 0.197 gdT L2
ENSG00000116133 DHCR24 577382 sc-eQTL 4.12e-01 0.0981 0.119 0.197 gdT L2
ENSG00000162402 USP24 249213 sc-eQTL 4.90e-01 -0.0793 0.115 0.197 gdT L2
ENSG00000243725 TTC4 748716 sc-eQTL 4.11e-01 -0.111 0.134 0.197 gdT L2
ENSG00000116133 DHCR24 577382 sc-eQTL 6.20e-01 0.0397 0.0799 0.204 intMono L2
ENSG00000162402 USP24 249213 sc-eQTL 8.27e-01 -0.0223 0.102 0.204 intMono L2
ENSG00000243725 TTC4 748716 sc-eQTL 9.94e-01 -0.000797 0.108 0.204 intMono L2
ENSG00000116133 DHCR24 577382 sc-eQTL 6.72e-01 -0.0333 0.0786 0.204 ncMono L2
ENSG00000162402 USP24 249213 sc-eQTL 8.43e-01 -0.0176 0.0887 0.204 ncMono L2
ENSG00000243725 TTC4 748716 sc-eQTL 4.02e-01 -0.0881 0.105 0.204 ncMono L2
ENSG00000116133 DHCR24 577382 sc-eQTL 9.27e-01 -0.00871 0.0947 0.192 pDC L2
ENSG00000162390 ACOT11 922320 sc-eQTL 4.96e-01 -0.0307 0.0449 0.192 pDC L2
ENSG00000162402 USP24 249213 sc-eQTL 4.12e-01 -0.0624 0.0758 0.192 pDC L2
ENSG00000243725 TTC4 748716 sc-eQTL 4.46e-01 0.0915 0.12 0.192 pDC L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000006555 TTC22 663254 sc-eQTL 1.32e-01 -0.154 0.102 0.203 B_Memory LOneK1K
ENSG00000116133 DHCR24 577382 sc-eQTL 7.52e-01 0.0326 0.103 0.203 B_Memory LOneK1K
ENSG00000162402 USP24 249213 sc-eQTL 1.89e-01 -0.0966 0.0733 0.203 B_Memory LOneK1K
ENSG00000243725 TTC4 748716 sc-eQTL 7.84e-01 -0.0278 0.102 0.203 B_Memory LOneK1K
ENSG00000006555 TTC22 663254 sc-eQTL 3.73e-01 -0.0954 0.107 0.203 B_Naive LOneK1K
ENSG00000116133 DHCR24 577382 sc-eQTL 4.71e-01 0.0695 0.0964 0.203 B_Naive LOneK1K
ENSG00000162402 USP24 249213 sc-eQTL 5.08e-02 0.133 0.0677 0.203 B_Naive LOneK1K
ENSG00000243725 TTC4 748716 sc-eQTL 2.47e-02 0.227 0.101 0.203 B_Naive LOneK1K
ENSG00000116133 DHCR24 577382 sc-eQTL 9.20e-01 -0.00611 0.0606 0.203 CD14_Mono LOneK1K
ENSG00000162402 USP24 249213 sc-eQTL 9.71e-01 -0.00238 0.0662 0.203 CD14_Mono LOneK1K
ENSG00000243725 TTC4 748716 sc-eQTL 5.81e-01 -0.0606 0.11 0.203 CD14_Mono LOneK1K
ENSG00000116133 DHCR24 577382 sc-eQTL 8.71e-01 0.0123 0.0754 0.203 CD16_Mono LOneK1K
ENSG00000162402 USP24 249213 sc-eQTL 4.60e-01 -0.0627 0.0847 0.203 CD16_Mono LOneK1K
ENSG00000243725 TTC4 748716 sc-eQTL 5.62e-01 -0.0617 0.106 0.203 CD16_Mono LOneK1K
ENSG00000006555 TTC22 663254 sc-eQTL 3.67e-01 -0.0789 0.0872 0.205 NK_CD56dim LOneK1K
ENSG00000116133 DHCR24 577382 sc-eQTL 9.21e-01 0.00911 0.0913 0.205 NK_CD56dim LOneK1K
ENSG00000162398 LEXM 658514 sc-eQTL 1.35e-01 -0.128 0.0853 0.205 NK_CD56dim LOneK1K
ENSG00000162402 USP24 249213 sc-eQTL 6.28e-01 -0.0264 0.0544 0.205 NK_CD56dim LOneK1K
ENSG00000243725 TTC4 748716 sc-eQTL 7.90e-01 0.0259 0.0968 0.205 NK_CD56dim LOneK1K

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000006555 TTC22 663254 eQTL 0.0188 0.0428 0.0182 0.0 0.0 0.202
ENSG00000184313 MROH7 822823 eQTL 0.0327 -0.0723 0.0338 0.0 0.0 0.202

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000162398 \N 658514 2.67e-07 1.36e-07 5.72e-08 2.05e-07 9.8e-08 9.48e-08 1.67e-07 5.66e-08 1.47e-07 6.08e-08 1.63e-07 1.05e-07 1.69e-07 7.64e-08 6.18e-08 7.74e-08 4.12e-08 1.51e-07 6.92e-08 4.8e-08 1.25e-07 1.25e-07 1.58e-07 2.68e-08 1.65e-07 1.22e-07 1.13e-07 1.01e-07 1.22e-07 1.07e-07 1.07e-07 2.99e-08 3.43e-08 8.89e-08 3.63e-08 2.95e-08 5.7e-08 8.76e-08 6.43e-08 4.19e-08 5e-08 1.48e-07 5.2e-08 7.47e-09 3.41e-08 1.89e-08 1.21e-07 1.89e-09 4.83e-08
ENSG00000184313 MROH7 822823 2.67e-07 1.25e-07 4.08e-08 1.82e-07 9.16e-08 9.65e-08 1.44e-07 5.37e-08 1.44e-07 4.74e-08 1.6e-07 8.36e-08 1.41e-07 6.56e-08 6e-08 7.3e-08 3.98e-08 1.21e-07 5.82e-08 4.45e-08 1.08e-07 1.27e-07 1.39e-07 3.49e-08 1.37e-07 1.14e-07 1.06e-07 9.57e-08 1.08e-07 1.02e-07 9.64e-08 4.09e-08 3.16e-08 8.55e-08 8.76e-08 3.6e-08 5.03e-08 9.23e-08 6.78e-08 3.37e-08 3.98e-08 1.35e-07 4.33e-08 1.23e-08 5.43e-08 1.83e-08 1.22e-07 3.86e-09 4.88e-08