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Genes within 1Mb (chr1:55458859:C:T):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000006555 TTC22 657536 sc-eQTL 5.84e-02 -0.168 0.0883 0.724 B L1
ENSG00000116133 DHCR24 571664 sc-eQTL 5.70e-01 -0.0479 0.0842 0.724 B L1
ENSG00000162402 USP24 243495 sc-eQTL 8.19e-01 -0.0118 0.0514 0.724 B L1
ENSG00000243725 TTC4 742998 sc-eQTL 8.69e-01 -0.0142 0.0861 0.724 B L1
ENSG00000006555 TTC22 657536 sc-eQTL 2.65e-01 -0.0774 0.0694 0.724 CD4T L1
ENSG00000162402 USP24 243495 sc-eQTL 3.24e-02 -0.106 0.049 0.724 CD4T L1
ENSG00000243725 TTC4 742998 sc-eQTL 5.20e-01 -0.0481 0.0745 0.724 CD4T L1
ENSG00000006555 TTC22 657536 sc-eQTL 6.76e-01 0.0255 0.061 0.724 CD8T L1
ENSG00000162402 USP24 243495 sc-eQTL 6.80e-01 -0.0208 0.0504 0.724 CD8T L1
ENSG00000243725 TTC4 742998 sc-eQTL 9.68e-03 -0.225 0.0862 0.724 CD8T L1
ENSG00000116133 DHCR24 571664 sc-eQTL 1.25e-02 -0.199 0.0791 0.718 DC L1
ENSG00000162390 ACOT11 916602 sc-eQTL 2.75e-02 -0.179 0.0805 0.718 DC L1
ENSG00000162402 USP24 243495 sc-eQTL 8.15e-01 0.0115 0.0492 0.718 DC L1
ENSG00000243725 TTC4 742998 sc-eQTL 7.80e-02 -0.168 0.0949 0.718 DC L1
ENSG00000116133 DHCR24 571664 sc-eQTL 2.75e-01 0.0635 0.058 0.724 Mono L1
ENSG00000162402 USP24 243495 sc-eQTL 8.70e-01 0.00872 0.0532 0.724 Mono L1
ENSG00000243725 TTC4 742998 sc-eQTL 1.08e-01 -0.15 0.0932 0.724 Mono L1
ENSG00000006555 TTC22 657536 sc-eQTL 3.29e-01 0.0786 0.0803 0.723 NK L1
ENSG00000116133 DHCR24 571664 sc-eQTL 2.33e-01 -0.0967 0.0809 0.723 NK L1
ENSG00000162398 LEXM 652796 sc-eQTL 3.62e-01 -0.0692 0.0758 0.723 NK L1
ENSG00000162402 USP24 243495 sc-eQTL 1.49e-01 -0.0663 0.0458 0.723 NK L1
ENSG00000243725 TTC4 742998 sc-eQTL 1.85e-01 -0.115 0.0867 0.723 NK L1
ENSG00000006555 TTC22 657536 sc-eQTL 2.29e-01 -0.087 0.0721 0.724 Other_T L1
ENSG00000116133 DHCR24 571664 sc-eQTL 7.59e-02 -0.0994 0.0557 0.724 Other_T L1
ENSG00000162402 USP24 243495 sc-eQTL 7.10e-01 -0.0248 0.0665 0.724 Other_T L1
ENSG00000243725 TTC4 742998 sc-eQTL 6.58e-02 -0.166 0.0898 0.724 Other_T L1
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000006555 TTC22 657536 sc-eQTL 5.96e-01 0.0408 0.0768 0.735 B_Activated L2
ENSG00000116133 DHCR24 571664 sc-eQTL 5.08e-01 0.0598 0.0902 0.735 B_Activated L2
ENSG00000162402 USP24 243495 sc-eQTL 4.49e-01 -0.0745 0.0981 0.735 B_Activated L2
ENSG00000243725 TTC4 742998 sc-eQTL 7.21e-02 -0.169 0.0932 0.735 B_Activated L2
ENSG00000006555 TTC22 657536 sc-eQTL 5.19e-02 -0.185 0.0945 0.725 B_Intermediate L2
ENSG00000116133 DHCR24 571664 sc-eQTL 7.80e-01 0.0247 0.0885 0.725 B_Intermediate L2
ENSG00000162402 USP24 243495 sc-eQTL 3.98e-01 0.0591 0.0697 0.725 B_Intermediate L2
ENSG00000243725 TTC4 742998 sc-eQTL 9.01e-02 -0.152 0.0893 0.725 B_Intermediate L2
ENSG00000006555 TTC22 657536 sc-eQTL 3.75e-01 0.0808 0.0909 0.724 B_Memory L2
ENSG00000116133 DHCR24 571664 sc-eQTL 2.41e-01 -0.106 0.0901 0.724 B_Memory L2
ENSG00000162402 USP24 243495 sc-eQTL 1.45e-01 -0.108 0.0741 0.724 B_Memory L2
ENSG00000243725 TTC4 742998 sc-eQTL 6.09e-01 -0.0489 0.0954 0.724 B_Memory L2
ENSG00000006555 TTC22 657536 sc-eQTL 6.31e-02 -0.176 0.0944 0.724 B_Naive1 L2
ENSG00000116133 DHCR24 571664 sc-eQTL 6.45e-01 -0.0411 0.0892 0.724 B_Naive1 L2
ENSG00000162402 USP24 243495 sc-eQTL 9.44e-02 -0.107 0.0635 0.724 B_Naive1 L2
ENSG00000243725 TTC4 742998 sc-eQTL 3.24e-02 0.186 0.0862 0.724 B_Naive1 L2
ENSG00000006555 TTC22 657536 sc-eQTL 5.96e-01 -0.0507 0.0955 0.725 B_Naive2 L2
ENSG00000116133 DHCR24 571664 sc-eQTL 8.77e-01 0.0129 0.0832 0.725 B_Naive2 L2
ENSG00000162402 USP24 243495 sc-eQTL 3.49e-01 0.0655 0.0697 0.725 B_Naive2 L2
ENSG00000243725 TTC4 742998 sc-eQTL 2.01e-01 -0.131 0.102 0.725 B_Naive2 L2
ENSG00000006555 TTC22 657536 sc-eQTL 5.05e-01 0.0599 0.0896 0.725 CD4_CTL L2
ENSG00000162402 USP24 243495 sc-eQTL 8.37e-01 0.0179 0.0872 0.725 CD4_CTL L2
ENSG00000243725 TTC4 742998 sc-eQTL 7.59e-01 0.03 0.0976 0.725 CD4_CTL L2
ENSG00000006555 TTC22 657536 sc-eQTL 3.70e-01 -0.0731 0.0814 0.724 CD4_Naive L2
ENSG00000162402 USP24 243495 sc-eQTL 6.30e-02 -0.0993 0.0531 0.724 CD4_Naive L2
ENSG00000243725 TTC4 742998 sc-eQTL 4.64e-01 -0.0598 0.0815 0.724 CD4_Naive L2
ENSG00000006555 TTC22 657536 sc-eQTL 1.06e-01 -0.139 0.0854 0.724 CD4_TCM L2
ENSG00000162402 USP24 243495 sc-eQTL 4.30e-01 -0.0508 0.0643 0.724 CD4_TCM L2
ENSG00000243725 TTC4 742998 sc-eQTL 8.72e-01 -0.015 0.0928 0.724 CD4_TCM L2
ENSG00000006555 TTC22 657536 sc-eQTL 4.50e-01 -0.0749 0.0989 0.724 CD4_TEM L2
ENSG00000162402 USP24 243495 sc-eQTL 7.08e-01 0.0273 0.0729 0.724 CD4_TEM L2
ENSG00000243725 TTC4 742998 sc-eQTL 2.59e-01 -0.109 0.0962 0.724 CD4_TEM L2
ENSG00000006555 TTC22 657536 sc-eQTL 6.70e-01 -0.0342 0.0801 0.724 CD8_CTL L2
ENSG00000162402 USP24 243495 sc-eQTL 1.24e-01 -0.0955 0.0618 0.724 CD8_CTL L2
ENSG00000243725 TTC4 742998 sc-eQTL 6.60e-01 -0.041 0.093 0.724 CD8_CTL L2
ENSG00000006555 TTC22 657536 sc-eQTL 3.61e-01 0.0808 0.0883 0.724 CD8_Naive L2
ENSG00000162402 USP24 243495 sc-eQTL 5.71e-01 -0.0367 0.0646 0.724 CD8_Naive L2
ENSG00000243725 TTC4 742998 sc-eQTL 1.62e-02 -0.226 0.0933 0.724 CD8_Naive L2
ENSG00000006555 TTC22 657536 sc-eQTL 2.71e-01 -0.105 0.0949 0.725 CD8_TCM L2
ENSG00000162402 USP24 243495 sc-eQTL 2.08e-01 0.101 0.0801 0.725 CD8_TCM L2
ENSG00000243725 TTC4 742998 sc-eQTL 9.44e-01 0.00689 0.0978 0.725 CD8_TCM L2
ENSG00000006555 TTC22 657536 sc-eQTL 3.97e-01 0.0798 0.0941 0.726 CD8_TEM L2
ENSG00000162402 USP24 243495 sc-eQTL 5.77e-01 0.0536 0.096 0.726 CD8_TEM L2
ENSG00000243725 TTC4 742998 sc-eQTL 6.34e-01 0.0465 0.0976 0.726 CD8_TEM L2
ENSG00000006555 TTC22 657536 sc-eQTL 1.65e-01 -0.119 0.0854 0.723 MAIT L2
ENSG00000116133 DHCR24 571664 sc-eQTL 6.85e-01 -0.0258 0.0635 0.723 MAIT L2
ENSG00000162402 USP24 243495 sc-eQTL 8.11e-01 -0.0184 0.0772 0.723 MAIT L2
ENSG00000243725 TTC4 742998 sc-eQTL 6.87e-01 -0.036 0.0892 0.723 MAIT L2
ENSG00000006555 TTC22 657536 sc-eQTL 4.17e-03 0.273 0.0944 0.722 NK_CD56bright L2
ENSG00000116133 DHCR24 571664 sc-eQTL 8.92e-02 -0.144 0.0845 0.722 NK_CD56bright L2
ENSG00000162398 LEXM 652796 sc-eQTL 2.02e-01 0.111 0.0868 0.722 NK_CD56bright L2
ENSG00000162402 USP24 243495 sc-eQTL 9.83e-01 0.00164 0.075 0.722 NK_CD56bright L2
ENSG00000243725 TTC4 742998 sc-eQTL 7.47e-01 -0.0306 0.0946 0.722 NK_CD56bright L2
ENSG00000006555 TTC22 657536 sc-eQTL 8.74e-01 0.0128 0.0809 0.724 NK_CD56dim L2
ENSG00000116133 DHCR24 571664 sc-eQTL 4.87e-01 -0.0587 0.0843 0.724 NK_CD56dim L2
ENSG00000162398 LEXM 652796 sc-eQTL 1.12e-01 -0.132 0.0825 0.724 NK_CD56dim L2
ENSG00000162402 USP24 243495 sc-eQTL 2.43e-01 -0.0615 0.0526 0.724 NK_CD56dim L2
ENSG00000243725 TTC4 742998 sc-eQTL 2.38e-01 -0.107 0.09 0.724 NK_CD56dim L2
ENSG00000006555 TTC22 657536 sc-eQTL 5.43e-01 0.0592 0.0972 0.721 NK_HLA L2
ENSG00000116133 DHCR24 571664 sc-eQTL 5.69e-02 -0.18 0.094 0.721 NK_HLA L2
ENSG00000162398 LEXM 652796 sc-eQTL 8.02e-01 0.0232 0.0922 0.721 NK_HLA L2
ENSG00000162402 USP24 243495 sc-eQTL 2.23e-02 -0.154 0.0668 0.721 NK_HLA L2
ENSG00000243725 TTC4 742998 sc-eQTL 2.54e-01 0.115 0.101 0.721 NK_HLA L2
ENSG00000006555 TTC22 657536 sc-eQTL 9.13e-01 -0.00939 0.0861 0.724 NK_cytokine L2
ENSG00000116133 DHCR24 571664 sc-eQTL 7.17e-01 -0.0316 0.087 0.724 NK_cytokine L2
ENSG00000162398 LEXM 652796 sc-eQTL 8.39e-01 -0.0185 0.0908 0.724 NK_cytokine L2
ENSG00000162402 USP24 243495 sc-eQTL 2.67e-01 -0.0687 0.0617 0.724 NK_cytokine L2
ENSG00000243725 TTC4 742998 sc-eQTL 9.32e-02 -0.154 0.0911 0.724 NK_cytokine L2
ENSG00000006555 TTC22 657536 sc-eQTL 4.76e-01 0.0854 0.119 0.726 PB L2
ENSG00000116133 DHCR24 571664 sc-eQTL 3.68e-01 0.0955 0.106 0.726 PB L2
ENSG00000162402 USP24 243495 sc-eQTL 7.76e-01 -0.0366 0.129 0.726 PB L2
ENSG00000243725 TTC4 742998 sc-eQTL 5.22e-01 0.0798 0.124 0.726 PB L2
ENSG00000006555 TTC22 657536 sc-eQTL 7.92e-01 0.0236 0.0898 0.724 Pro_T L2
ENSG00000116133 DHCR24 571664 sc-eQTL 4.69e-01 -0.0552 0.0762 0.724 Pro_T L2
ENSG00000162402 USP24 243495 sc-eQTL 3.32e-01 -0.0841 0.0864 0.724 Pro_T L2
ENSG00000243725 TTC4 742998 sc-eQTL 1.05e-01 -0.154 0.0945 0.724 Pro_T L2
ENSG00000006555 TTC22 657536 sc-eQTL 7.58e-01 0.0272 0.0881 0.724 Treg L2
ENSG00000162402 USP24 243495 sc-eQTL 1.58e-01 -0.111 0.0781 0.724 Treg L2
ENSG00000243725 TTC4 742998 sc-eQTL 3.32e-01 0.096 0.0987 0.724 Treg L2
ENSG00000116133 DHCR24 571664 sc-eQTL 2.90e-01 -0.0823 0.0775 0.72 cDC L2
ENSG00000162390 ACOT11 916602 sc-eQTL 9.93e-03 -0.219 0.0839 0.72 cDC L2
ENSG00000162402 USP24 243495 sc-eQTL 1.33e-01 0.144 0.0952 0.72 cDC L2
ENSG00000243725 TTC4 742998 sc-eQTL 2.37e-01 -0.116 0.0979 0.72 cDC L2
ENSG00000116133 DHCR24 571664 sc-eQTL 3.49e-01 0.0528 0.0563 0.724 cMono_IL1B L2
ENSG00000162402 USP24 243495 sc-eQTL 5.61e-01 0.0371 0.0637 0.724 cMono_IL1B L2
ENSG00000243725 TTC4 742998 sc-eQTL 8.24e-01 -0.0217 0.0976 0.724 cMono_IL1B L2
ENSG00000116133 DHCR24 571664 sc-eQTL 3.98e-01 0.045 0.0531 0.724 cMono_S100A L2
ENSG00000162402 USP24 243495 sc-eQTL 6.70e-01 -0.0336 0.0788 0.724 cMono_S100A L2
ENSG00000243725 TTC4 742998 sc-eQTL 4.81e-01 -0.0696 0.0986 0.724 cMono_S100A L2
ENSG00000006555 TTC22 657536 sc-eQTL 7.18e-01 0.0331 0.0912 0.727 gdT L2
ENSG00000116133 DHCR24 571664 sc-eQTL 8.95e-01 -0.0135 0.102 0.727 gdT L2
ENSG00000162402 USP24 243495 sc-eQTL 4.55e-01 0.073 0.0975 0.727 gdT L2
ENSG00000243725 TTC4 742998 sc-eQTL 2.41e-01 -0.134 0.114 0.727 gdT L2
ENSG00000116133 DHCR24 571664 sc-eQTL 1.46e-01 0.103 0.0706 0.724 intMono L2
ENSG00000162402 USP24 243495 sc-eQTL 7.93e-01 -0.0238 0.0905 0.724 intMono L2
ENSG00000243725 TTC4 742998 sc-eQTL 8.00e-01 -0.0244 0.0963 0.724 intMono L2
ENSG00000116133 DHCR24 571664 sc-eQTL 3.09e-02 0.15 0.0691 0.719 ncMono L2
ENSG00000162402 USP24 243495 sc-eQTL 7.65e-01 0.0236 0.0788 0.719 ncMono L2
ENSG00000243725 TTC4 742998 sc-eQTL 3.69e-01 -0.0838 0.0931 0.719 ncMono L2
ENSG00000116133 DHCR24 571664 sc-eQTL 1.41e-02 -0.201 0.0809 0.701 pDC L2
ENSG00000162390 ACOT11 916602 sc-eQTL 3.12e-01 -0.0396 0.0391 0.701 pDC L2
ENSG00000162402 USP24 243495 sc-eQTL 5.34e-01 -0.0413 0.0661 0.701 pDC L2
ENSG00000243725 TTC4 742998 sc-eQTL 3.55e-01 -0.0967 0.104 0.701 pDC L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000006555 TTC22 657536 sc-eQTL 1.86e-01 -0.12 0.0906 0.724 B_Memory LOneK1K
ENSG00000116133 DHCR24 571664 sc-eQTL 4.76e-01 -0.0651 0.0912 0.724 B_Memory LOneK1K
ENSG00000162402 USP24 243495 sc-eQTL 5.61e-01 -0.0379 0.0652 0.724 B_Memory LOneK1K
ENSG00000243725 TTC4 742998 sc-eQTL 3.19e-01 -0.0896 0.0898 0.724 B_Memory LOneK1K
ENSG00000006555 TTC22 657536 sc-eQTL 7.36e-02 -0.171 0.095 0.724 B_Naive LOneK1K
ENSG00000116133 DHCR24 571664 sc-eQTL 6.06e-01 -0.0445 0.0862 0.724 B_Naive LOneK1K
ENSG00000162402 USP24 243495 sc-eQTL 5.20e-01 -0.0394 0.061 0.724 B_Naive LOneK1K
ENSG00000243725 TTC4 742998 sc-eQTL 3.93e-01 0.0778 0.0908 0.724 B_Naive LOneK1K
ENSG00000116133 DHCR24 571664 sc-eQTL 3.85e-01 0.0475 0.0546 0.724 CD14_Mono LOneK1K
ENSG00000162402 USP24 243495 sc-eQTL 7.76e-01 0.017 0.0597 0.724 CD14_Mono LOneK1K
ENSG00000243725 TTC4 742998 sc-eQTL 4.30e-01 -0.0782 0.0989 0.724 CD14_Mono LOneK1K
ENSG00000116133 DHCR24 571664 sc-eQTL 8.69e-02 0.114 0.0662 0.722 CD16_Mono LOneK1K
ENSG00000162402 USP24 243495 sc-eQTL 6.40e-01 0.0351 0.075 0.722 CD16_Mono LOneK1K
ENSG00000243725 TTC4 742998 sc-eQTL 1.41e-01 -0.138 0.0935 0.722 CD16_Mono LOneK1K
ENSG00000006555 TTC22 657536 sc-eQTL 8.44e-01 0.0155 0.0788 0.724 NK_CD56dim LOneK1K
ENSG00000116133 DHCR24 571664 sc-eQTL 2.43e-01 -0.0961 0.082 0.724 NK_CD56dim LOneK1K
ENSG00000162398 LEXM 652796 sc-eQTL 1.30e-01 -0.117 0.0769 0.724 NK_CD56dim LOneK1K
ENSG00000162402 USP24 243495 sc-eQTL 8.51e-02 -0.0842 0.0487 0.724 NK_CD56dim LOneK1K
ENSG00000243725 TTC4 742998 sc-eQTL 1.88e-01 -0.115 0.087 0.724 NK_CD56dim LOneK1K

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000169174 PCSK9 419311 pQTL 0.00823 -0.0801 0.0303 0.0 0.0 0.276
ENSG00000234810 AL603840.1 129571 eQTL 5.22e-06 -0.151 0.0329 0.0 0.0 0.287

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000234810 AL603840.1 129571 4.46e-06 4.79e-06 8.75e-07 2.59e-06 1.51e-06 1.49e-06 3.96e-06 9.61e-07 4.96e-06 2.33e-06 4.9e-06 3.37e-06 7.38e-06 2.3e-06 1.35e-06 3.41e-06 2.06e-06 3.26e-06 1.45e-06 1.15e-06 3e-06 4.73e-06 3.78e-06 1.4e-06 5.37e-06 1.81e-06 2.57e-06 1.73e-06 4.26e-06 3.94e-06 2.72e-06 5.4e-07 5.29e-07 1.69e-06 2.15e-06 9e-07 9.48e-07 3.74e-07 8.69e-07 5.04e-07 6.91e-07 5.33e-06 3.82e-07 1.58e-07 6.1e-07 7.44e-07 1.03e-06 4.59e-07 3.29e-07