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Genes within 1Mb (chr1:55441821:A:G):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000006555 TTC22 640498 sc-eQTL 3.12e-01 -0.0885 0.0874 0.393 B L1
ENSG00000116133 DHCR24 554626 sc-eQTL 8.60e-01 -0.0146 0.0828 0.393 B L1
ENSG00000162402 USP24 226457 sc-eQTL 9.52e-01 -0.00304 0.0505 0.393 B L1
ENSG00000243725 TTC4 725960 sc-eQTL 2.91e-02 -0.184 0.0837 0.393 B L1
ENSG00000006555 TTC22 640498 sc-eQTL 7.88e-02 -0.121 0.0683 0.393 CD4T L1
ENSG00000162402 USP24 226457 sc-eQTL 4.02e-01 -0.0411 0.0489 0.393 CD4T L1
ENSG00000243725 TTC4 725960 sc-eQTL 6.40e-01 -0.0345 0.0737 0.393 CD4T L1
ENSG00000006555 TTC22 640498 sc-eQTL 7.76e-01 -0.0169 0.0594 0.393 CD8T L1
ENSG00000162402 USP24 226457 sc-eQTL 3.25e-01 -0.0483 0.049 0.393 CD8T L1
ENSG00000243725 TTC4 725960 sc-eQTL 5.46e-02 -0.163 0.0845 0.393 CD8T L1
ENSG00000116133 DHCR24 554626 sc-eQTL 1.52e-02 -0.195 0.0798 0.385 DC L1
ENSG00000162390 ACOT11 899564 sc-eQTL 9.55e-01 0.00469 0.0822 0.385 DC L1
ENSG00000162402 USP24 226457 sc-eQTL 6.38e-01 -0.0234 0.0495 0.385 DC L1
ENSG00000243725 TTC4 725960 sc-eQTL 2.53e-01 -0.11 0.0961 0.385 DC L1
ENSG00000116133 DHCR24 554626 sc-eQTL 4.77e-01 0.0411 0.0576 0.393 Mono L1
ENSG00000162402 USP24 226457 sc-eQTL 3.39e-01 0.0505 0.0527 0.393 Mono L1
ENSG00000243725 TTC4 725960 sc-eQTL 9.66e-01 -0.00398 0.0929 0.393 Mono L1
ENSG00000006555 TTC22 640498 sc-eQTL 3.32e-01 0.0765 0.0787 0.393 NK L1
ENSG00000116133 DHCR24 554626 sc-eQTL 9.18e-01 0.00817 0.0796 0.393 NK L1
ENSG00000162398 LEXM 635758 sc-eQTL 5.81e-01 -0.0411 0.0744 0.393 NK L1
ENSG00000162402 USP24 226457 sc-eQTL 2.67e-01 -0.0501 0.045 0.393 NK L1
ENSG00000243725 TTC4 725960 sc-eQTL 1.32e-01 -0.128 0.0849 0.393 NK L1
ENSG00000006555 TTC22 640498 sc-eQTL 3.79e-01 -0.0609 0.0692 0.393 Other_T L1
ENSG00000116133 DHCR24 554626 sc-eQTL 5.96e-02 -0.101 0.0533 0.393 Other_T L1
ENSG00000162402 USP24 226457 sc-eQTL 6.35e-01 -0.0303 0.0636 0.393 Other_T L1
ENSG00000243725 TTC4 725960 sc-eQTL 7.23e-01 -0.0307 0.0867 0.393 Other_T L1
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000006555 TTC22 640498 sc-eQTL 4.06e-01 0.0609 0.0731 0.403 B_Activated L2
ENSG00000116133 DHCR24 554626 sc-eQTL 1.37e-01 0.128 0.0855 0.403 B_Activated L2
ENSG00000162402 USP24 226457 sc-eQTL 5.11e-01 0.0617 0.0935 0.403 B_Activated L2
ENSG00000243725 TTC4 725960 sc-eQTL 1.95e-01 -0.116 0.0892 0.403 B_Activated L2
ENSG00000006555 TTC22 640498 sc-eQTL 6.34e-01 0.0445 0.0933 0.393 B_Intermediate L2
ENSG00000116133 DHCR24 554626 sc-eQTL 2.33e-02 0.196 0.0856 0.393 B_Intermediate L2
ENSG00000162402 USP24 226457 sc-eQTL 9.31e-02 0.115 0.0679 0.393 B_Intermediate L2
ENSG00000243725 TTC4 725960 sc-eQTL 1.63e-02 -0.21 0.0868 0.393 B_Intermediate L2
ENSG00000006555 TTC22 640498 sc-eQTL 3.18e-01 -0.0882 0.0881 0.394 B_Memory L2
ENSG00000116133 DHCR24 554626 sc-eQTL 5.65e-01 -0.0505 0.0875 0.394 B_Memory L2
ENSG00000162402 USP24 226457 sc-eQTL 3.07e-01 -0.0738 0.0721 0.394 B_Memory L2
ENSG00000243725 TTC4 725960 sc-eQTL 5.65e-01 -0.0534 0.0925 0.394 B_Memory L2
ENSG00000006555 TTC22 640498 sc-eQTL 2.50e-02 -0.208 0.0922 0.393 B_Naive1 L2
ENSG00000116133 DHCR24 554626 sc-eQTL 1.90e-01 -0.115 0.0871 0.393 B_Naive1 L2
ENSG00000162402 USP24 226457 sc-eQTL 4.88e-01 -0.0436 0.0626 0.393 B_Naive1 L2
ENSG00000243725 TTC4 725960 sc-eQTL 1.40e-01 -0.126 0.085 0.393 B_Naive1 L2
ENSG00000006555 TTC22 640498 sc-eQTL 4.21e-01 -0.0753 0.0934 0.395 B_Naive2 L2
ENSG00000116133 DHCR24 554626 sc-eQTL 4.59e-01 -0.0603 0.0813 0.395 B_Naive2 L2
ENSG00000162402 USP24 226457 sc-eQTL 4.32e-01 0.0537 0.0683 0.395 B_Naive2 L2
ENSG00000243725 TTC4 725960 sc-eQTL 4.58e-01 -0.0744 0.1 0.395 B_Naive2 L2
ENSG00000006555 TTC22 640498 sc-eQTL 2.27e-01 0.106 0.0878 0.393 CD4_CTL L2
ENSG00000162402 USP24 226457 sc-eQTL 2.70e-01 -0.0945 0.0855 0.393 CD4_CTL L2
ENSG00000243725 TTC4 725960 sc-eQTL 2.13e-01 0.119 0.0956 0.393 CD4_CTL L2
ENSG00000006555 TTC22 640498 sc-eQTL 2.74e-02 -0.177 0.0798 0.393 CD4_Naive L2
ENSG00000162402 USP24 226457 sc-eQTL 3.38e-01 -0.0509 0.0529 0.393 CD4_Naive L2
ENSG00000243725 TTC4 725960 sc-eQTL 9.72e-01 -0.0028 0.0809 0.393 CD4_Naive L2
ENSG00000006555 TTC22 640498 sc-eQTL 4.40e-01 -0.0652 0.0844 0.393 CD4_TCM L2
ENSG00000162402 USP24 226457 sc-eQTL 7.91e-01 0.0168 0.0634 0.393 CD4_TCM L2
ENSG00000243725 TTC4 725960 sc-eQTL 6.41e-01 -0.0426 0.0912 0.393 CD4_TCM L2
ENSG00000006555 TTC22 640498 sc-eQTL 1.45e-01 -0.142 0.097 0.393 CD4_TEM L2
ENSG00000162402 USP24 226457 sc-eQTL 7.03e-01 0.0274 0.0718 0.393 CD4_TEM L2
ENSG00000243725 TTC4 725960 sc-eQTL 1.89e-01 -0.125 0.0946 0.393 CD4_TEM L2
ENSG00000006555 TTC22 640498 sc-eQTL 2.65e-01 -0.0864 0.0774 0.393 CD8_CTL L2
ENSG00000162402 USP24 226457 sc-eQTL 1.68e-01 -0.0829 0.0599 0.393 CD8_CTL L2
ENSG00000243725 TTC4 725960 sc-eQTL 6.11e-01 -0.0458 0.09 0.393 CD8_CTL L2
ENSG00000006555 TTC22 640498 sc-eQTL 4.32e-01 0.0679 0.0862 0.393 CD8_Naive L2
ENSG00000162402 USP24 226457 sc-eQTL 8.12e-01 -0.015 0.0631 0.393 CD8_Naive L2
ENSG00000243725 TTC4 725960 sc-eQTL 8.27e-01 -0.0202 0.0923 0.393 CD8_Naive L2
ENSG00000006555 TTC22 640498 sc-eQTL 9.27e-01 -0.00869 0.0953 0.384 CD8_TCM L2
ENSG00000162402 USP24 226457 sc-eQTL 1.98e-02 0.186 0.0793 0.384 CD8_TCM L2
ENSG00000243725 TTC4 725960 sc-eQTL 5.81e-01 0.054 0.0977 0.384 CD8_TCM L2
ENSG00000006555 TTC22 640498 sc-eQTL 9.32e-01 -0.00794 0.0933 0.397 CD8_TEM L2
ENSG00000162402 USP24 226457 sc-eQTL 6.53e-01 -0.0428 0.095 0.397 CD8_TEM L2
ENSG00000243725 TTC4 725960 sc-eQTL 9.49e-01 -0.00619 0.0966 0.397 CD8_TEM L2
ENSG00000006555 TTC22 640498 sc-eQTL 3.21e-01 -0.0847 0.0852 0.392 MAIT L2
ENSG00000116133 DHCR24 554626 sc-eQTL 3.44e-01 -0.0598 0.063 0.392 MAIT L2
ENSG00000162402 USP24 226457 sc-eQTL 8.10e-01 0.0185 0.0768 0.392 MAIT L2
ENSG00000243725 TTC4 725960 sc-eQTL 5.37e-01 -0.0549 0.0887 0.392 MAIT L2
ENSG00000006555 TTC22 640498 sc-eQTL 5.88e-02 0.182 0.0956 0.396 NK_CD56bright L2
ENSG00000116133 DHCR24 554626 sc-eQTL 1.75e-01 -0.116 0.0848 0.396 NK_CD56bright L2
ENSG00000162398 LEXM 635758 sc-eQTL 7.04e-01 0.0332 0.0873 0.396 NK_CD56bright L2
ENSG00000162402 USP24 226457 sc-eQTL 7.89e-01 0.0201 0.0751 0.396 NK_CD56bright L2
ENSG00000243725 TTC4 725960 sc-eQTL 7.85e-01 -0.0259 0.0948 0.396 NK_CD56bright L2
ENSG00000006555 TTC22 640498 sc-eQTL 6.46e-01 0.0365 0.0794 0.394 NK_CD56dim L2
ENSG00000116133 DHCR24 554626 sc-eQTL 9.03e-01 0.0101 0.0829 0.394 NK_CD56dim L2
ENSG00000162398 LEXM 635758 sc-eQTL 3.74e-01 -0.0724 0.0813 0.394 NK_CD56dim L2
ENSG00000162402 USP24 226457 sc-eQTL 1.94e-01 -0.0672 0.0516 0.394 NK_CD56dim L2
ENSG00000243725 TTC4 725960 sc-eQTL 8.13e-01 -0.0209 0.0886 0.394 NK_CD56dim L2
ENSG00000006555 TTC22 640498 sc-eQTL 8.18e-01 0.022 0.0955 0.386 NK_HLA L2
ENSG00000116133 DHCR24 554626 sc-eQTL 3.64e-01 -0.0846 0.0929 0.386 NK_HLA L2
ENSG00000162398 LEXM 635758 sc-eQTL 6.15e-01 -0.0455 0.0904 0.386 NK_HLA L2
ENSG00000162402 USP24 226457 sc-eQTL 8.84e-01 -0.00968 0.0664 0.386 NK_HLA L2
ENSG00000243725 TTC4 725960 sc-eQTL 2.78e-01 -0.107 0.0988 0.386 NK_HLA L2
ENSG00000006555 TTC22 640498 sc-eQTL 4.08e-01 0.0702 0.0847 0.394 NK_cytokine L2
ENSG00000116133 DHCR24 554626 sc-eQTL 7.84e-01 0.0235 0.0858 0.394 NK_cytokine L2
ENSG00000162398 LEXM 635758 sc-eQTL 8.76e-01 0.0139 0.0895 0.394 NK_cytokine L2
ENSG00000162402 USP24 226457 sc-eQTL 5.46e-01 -0.0368 0.0609 0.394 NK_cytokine L2
ENSG00000243725 TTC4 725960 sc-eQTL 1.02e-01 -0.148 0.0898 0.394 NK_cytokine L2
ENSG00000006555 TTC22 640498 sc-eQTL 6.29e-01 0.053 0.109 0.407 PB L2
ENSG00000116133 DHCR24 554626 sc-eQTL 7.85e-01 -0.0265 0.097 0.407 PB L2
ENSG00000162402 USP24 226457 sc-eQTL 4.91e-01 -0.0812 0.117 0.407 PB L2
ENSG00000243725 TTC4 725960 sc-eQTL 8.00e-01 0.0289 0.114 0.407 PB L2
ENSG00000006555 TTC22 640498 sc-eQTL 9.09e-01 0.00977 0.0857 0.393 Pro_T L2
ENSG00000116133 DHCR24 554626 sc-eQTL 1.85e-01 -0.0966 0.0726 0.393 Pro_T L2
ENSG00000162402 USP24 226457 sc-eQTL 3.33e-02 -0.175 0.0818 0.393 Pro_T L2
ENSG00000243725 TTC4 725960 sc-eQTL 3.91e-01 0.0779 0.0907 0.393 Pro_T L2
ENSG00000006555 TTC22 640498 sc-eQTL 6.72e-01 0.0361 0.0852 0.393 Treg L2
ENSG00000162402 USP24 226457 sc-eQTL 2.64e-01 -0.0848 0.0757 0.393 Treg L2
ENSG00000243725 TTC4 725960 sc-eQTL 5.23e-01 0.0612 0.0956 0.393 Treg L2
ENSG00000116133 DHCR24 554626 sc-eQTL 1.20e-01 -0.121 0.0773 0.383 cDC L2
ENSG00000162390 ACOT11 899564 sc-eQTL 9.53e-01 0.005 0.0855 0.383 cDC L2
ENSG00000162402 USP24 226457 sc-eQTL 9.02e-01 0.0118 0.0958 0.383 cDC L2
ENSG00000243725 TTC4 725960 sc-eQTL 2.87e-01 0.105 0.098 0.383 cDC L2
ENSG00000116133 DHCR24 554626 sc-eQTL 7.78e-01 0.0156 0.0551 0.393 cMono_IL1B L2
ENSG00000162402 USP24 226457 sc-eQTL 1.35e-01 0.0929 0.062 0.393 cMono_IL1B L2
ENSG00000243725 TTC4 725960 sc-eQTL 4.43e-01 0.0731 0.0952 0.393 cMono_IL1B L2
ENSG00000116133 DHCR24 554626 sc-eQTL 2.76e-01 0.0566 0.0518 0.393 cMono_S100A L2
ENSG00000162402 USP24 226457 sc-eQTL 4.16e-01 0.0627 0.077 0.393 cMono_S100A L2
ENSG00000243725 TTC4 725960 sc-eQTL 8.93e-01 -0.013 0.0965 0.393 cMono_S100A L2
ENSG00000006555 TTC22 640498 sc-eQTL 5.47e-01 -0.0556 0.0922 0.385 gdT L2
ENSG00000116133 DHCR24 554626 sc-eQTL 7.00e-02 -0.186 0.102 0.385 gdT L2
ENSG00000162402 USP24 226457 sc-eQTL 1.83e-01 0.132 0.0982 0.385 gdT L2
ENSG00000243725 TTC4 725960 sc-eQTL 4.92e-01 -0.0796 0.116 0.385 gdT L2
ENSG00000116133 DHCR24 554626 sc-eQTL 7.17e-01 0.0255 0.0701 0.396 intMono L2
ENSG00000162402 USP24 226457 sc-eQTL 9.31e-01 0.00781 0.0894 0.396 intMono L2
ENSG00000243725 TTC4 725960 sc-eQTL 3.45e-01 -0.0898 0.095 0.396 intMono L2
ENSG00000116133 DHCR24 554626 sc-eQTL 6.32e-01 0.0334 0.0695 0.387 ncMono L2
ENSG00000162402 USP24 226457 sc-eQTL 6.76e-01 0.0329 0.0784 0.387 ncMono L2
ENSG00000243725 TTC4 725960 sc-eQTL 5.31e-01 -0.0582 0.0928 0.387 ncMono L2
ENSG00000116133 DHCR24 554626 sc-eQTL 7.17e-02 -0.149 0.0823 0.373 pDC L2
ENSG00000162390 ACOT11 899564 sc-eQTL 4.33e-01 -0.031 0.0394 0.373 pDC L2
ENSG00000162402 USP24 226457 sc-eQTL 9.40e-01 -0.00504 0.0667 0.373 pDC L2
ENSG00000243725 TTC4 725960 sc-eQTL 9.54e-02 -0.175 0.104 0.373 pDC L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000006555 TTC22 640498 sc-eQTL 8.23e-01 0.02 0.0895 0.393 B_Memory LOneK1K
ENSG00000116133 DHCR24 554626 sc-eQTL 1.93e-01 0.117 0.0895 0.393 B_Memory LOneK1K
ENSG00000162402 USP24 226457 sc-eQTL 5.83e-01 0.0353 0.0641 0.393 B_Memory LOneK1K
ENSG00000243725 TTC4 725960 sc-eQTL 8.15e-02 -0.154 0.0879 0.393 B_Memory LOneK1K
ENSG00000006555 TTC22 640498 sc-eQTL 4.43e-02 -0.189 0.0935 0.393 B_Naive LOneK1K
ENSG00000116133 DHCR24 554626 sc-eQTL 2.09e-01 -0.107 0.0847 0.393 B_Naive LOneK1K
ENSG00000162402 USP24 226457 sc-eQTL 9.75e-01 -0.00186 0.0602 0.393 B_Naive LOneK1K
ENSG00000243725 TTC4 725960 sc-eQTL 1.36e-01 -0.134 0.0892 0.393 B_Naive LOneK1K
ENSG00000116133 DHCR24 554626 sc-eQTL 5.40e-01 0.0331 0.0539 0.393 CD14_Mono LOneK1K
ENSG00000162402 USP24 226457 sc-eQTL 2.09e-01 0.074 0.0587 0.393 CD14_Mono LOneK1K
ENSG00000243725 TTC4 725960 sc-eQTL 2.80e-01 0.106 0.0975 0.393 CD14_Mono LOneK1K
ENSG00000116133 DHCR24 554626 sc-eQTL 7.51e-01 0.021 0.0661 0.394 CD16_Mono LOneK1K
ENSG00000162402 USP24 226457 sc-eQTL 4.21e-01 0.0599 0.0743 0.394 CD16_Mono LOneK1K
ENSG00000243725 TTC4 725960 sc-eQTL 1.16e-01 -0.146 0.0927 0.394 CD16_Mono LOneK1K
ENSG00000006555 TTC22 640498 sc-eQTL 6.97e-01 0.0302 0.0774 0.394 NK_CD56dim LOneK1K
ENSG00000116133 DHCR24 554626 sc-eQTL 9.21e-01 0.00799 0.0808 0.394 NK_CD56dim LOneK1K
ENSG00000162398 LEXM 635758 sc-eQTL 5.36e-01 -0.0471 0.0759 0.394 NK_CD56dim LOneK1K
ENSG00000162402 USP24 226457 sc-eQTL 2.13e-01 -0.0599 0.048 0.394 NK_CD56dim LOneK1K
ENSG00000243725 TTC4 725960 sc-eQTL 1.72e-01 -0.117 0.0854 0.394 NK_CD56dim LOneK1K

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000162399 BSND 443628 pQTL 0.0471 0.0621 0.0313 0.0 0.0 0.405

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina