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Genes within 1Mb (chr1:55437995:C:T):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000006555 TTC22 636672 sc-eQTL 8.90e-01 0.0214 0.155 0.919 B L1
ENSG00000116133 DHCR24 550800 sc-eQTL 3.50e-01 0.137 0.146 0.919 B L1
ENSG00000162402 USP24 222631 sc-eQTL 7.62e-02 0.158 0.0885 0.919 B L1
ENSG00000243725 TTC4 722134 sc-eQTL 9.23e-01 -0.0144 0.149 0.919 B L1
ENSG00000006555 TTC22 636672 sc-eQTL 5.99e-01 -0.0626 0.119 0.919 CD4T L1
ENSG00000162402 USP24 222631 sc-eQTL 1.23e-01 0.131 0.0842 0.919 CD4T L1
ENSG00000243725 TTC4 722134 sc-eQTL 8.11e-01 0.0305 0.127 0.919 CD4T L1
ENSG00000006555 TTC22 636672 sc-eQTL 3.24e-01 0.102 0.103 0.919 CD8T L1
ENSG00000162402 USP24 222631 sc-eQTL 4.87e-01 0.0597 0.0857 0.919 CD8T L1
ENSG00000243725 TTC4 722134 sc-eQTL 2.33e-01 0.177 0.148 0.919 CD8T L1
ENSG00000116133 DHCR24 550800 sc-eQTL 3.41e-01 -0.131 0.137 0.917 DC L1
ENSG00000162390 ACOT11 895738 sc-eQTL 9.53e-01 -0.00828 0.139 0.917 DC L1
ENSG00000162402 USP24 222631 sc-eQTL 1.46e-01 -0.122 0.0837 0.917 DC L1
ENSG00000243725 TTC4 722134 sc-eQTL 3.30e-01 0.159 0.163 0.917 DC L1
ENSG00000116133 DHCR24 550800 sc-eQTL 7.31e-02 -0.176 0.0976 0.919 Mono L1
ENSG00000162402 USP24 222631 sc-eQTL 4.33e-01 0.0706 0.0899 0.919 Mono L1
ENSG00000243725 TTC4 722134 sc-eQTL 3.65e-01 0.144 0.158 0.919 Mono L1
ENSG00000006555 TTC22 636672 sc-eQTL 9.00e-01 -0.0175 0.138 0.918 NK L1
ENSG00000116133 DHCR24 550800 sc-eQTL 4.96e-01 -0.095 0.139 0.918 NK L1
ENSG00000162398 LEXM 631932 sc-eQTL 9.77e-01 -0.0037 0.13 0.918 NK L1
ENSG00000162402 USP24 222631 sc-eQTL 4.47e-01 -0.0601 0.079 0.918 NK L1
ENSG00000243725 TTC4 722134 sc-eQTL 9.60e-01 0.00742 0.15 0.918 NK L1
ENSG00000006555 TTC22 636672 sc-eQTL 8.40e-01 0.0251 0.124 0.919 Other_T L1
ENSG00000116133 DHCR24 550800 sc-eQTL 4.72e-01 0.0695 0.0965 0.919 Other_T L1
ENSG00000162402 USP24 222631 sc-eQTL 7.23e-01 0.0406 0.114 0.919 Other_T L1
ENSG00000243725 TTC4 722134 sc-eQTL 9.61e-01 -0.00756 0.156 0.919 Other_T L1
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000006555 TTC22 636672 sc-eQTL 1.98e-01 0.18 0.139 0.926 B_Activated L2
ENSG00000116133 DHCR24 550800 sc-eQTL 6.07e-01 0.0846 0.164 0.926 B_Activated L2
ENSG00000162402 USP24 222631 sc-eQTL 7.59e-01 -0.055 0.179 0.926 B_Activated L2
ENSG00000243725 TTC4 722134 sc-eQTL 4.84e-01 0.12 0.171 0.926 B_Activated L2
ENSG00000006555 TTC22 636672 sc-eQTL 1.00e-01 0.269 0.163 0.918 B_Intermediate L2
ENSG00000116133 DHCR24 550800 sc-eQTL 4.85e-01 0.106 0.152 0.918 B_Intermediate L2
ENSG00000162402 USP24 222631 sc-eQTL 5.99e-01 0.0632 0.12 0.918 B_Intermediate L2
ENSG00000243725 TTC4 722134 sc-eQTL 4.17e-01 0.125 0.154 0.918 B_Intermediate L2
ENSG00000006555 TTC22 636672 sc-eQTL 5.88e-01 -0.0879 0.162 0.918 B_Memory L2
ENSG00000116133 DHCR24 550800 sc-eQTL 2.44e-01 0.188 0.161 0.918 B_Memory L2
ENSG00000162402 USP24 222631 sc-eQTL 4.94e-01 0.091 0.133 0.918 B_Memory L2
ENSG00000243725 TTC4 722134 sc-eQTL 3.07e-01 -0.174 0.17 0.918 B_Memory L2
ENSG00000006555 TTC22 636672 sc-eQTL 7.45e-01 -0.0532 0.164 0.919 B_Naive1 L2
ENSG00000116133 DHCR24 550800 sc-eQTL 9.72e-01 -0.00545 0.153 0.919 B_Naive1 L2
ENSG00000162402 USP24 222631 sc-eQTL 6.31e-02 0.204 0.109 0.919 B_Naive1 L2
ENSG00000243725 TTC4 722134 sc-eQTL 3.00e-02 -0.324 0.148 0.919 B_Naive1 L2
ENSG00000006555 TTC22 636672 sc-eQTL 8.06e-02 -0.286 0.163 0.918 B_Naive2 L2
ENSG00000116133 DHCR24 550800 sc-eQTL 1.64e-01 -0.198 0.142 0.918 B_Naive2 L2
ENSG00000162402 USP24 222631 sc-eQTL 3.13e-01 0.121 0.12 0.918 B_Naive2 L2
ENSG00000243725 TTC4 722134 sc-eQTL 5.33e-01 0.11 0.175 0.918 B_Naive2 L2
ENSG00000006555 TTC22 636672 sc-eQTL 6.42e-01 0.072 0.155 0.918 CD4_CTL L2
ENSG00000162402 USP24 222631 sc-eQTL 6.38e-01 -0.0708 0.15 0.918 CD4_CTL L2
ENSG00000243725 TTC4 722134 sc-eQTL 9.39e-01 0.0129 0.168 0.918 CD4_CTL L2
ENSG00000006555 TTC22 636672 sc-eQTL 8.42e-01 -0.0281 0.141 0.919 CD4_Naive L2
ENSG00000162402 USP24 222631 sc-eQTL 1.89e-01 0.121 0.0922 0.919 CD4_Naive L2
ENSG00000243725 TTC4 722134 sc-eQTL 4.87e-01 0.0981 0.141 0.919 CD4_Naive L2
ENSG00000006555 TTC22 636672 sc-eQTL 4.34e-01 -0.115 0.147 0.919 CD4_TCM L2
ENSG00000162402 USP24 222631 sc-eQTL 4.05e-01 0.0922 0.11 0.919 CD4_TCM L2
ENSG00000243725 TTC4 722134 sc-eQTL 8.31e-01 -0.034 0.159 0.919 CD4_TCM L2
ENSG00000006555 TTC22 636672 sc-eQTL 7.78e-01 0.0491 0.174 0.919 CD4_TEM L2
ENSG00000162402 USP24 222631 sc-eQTL 9.83e-01 0.00271 0.128 0.919 CD4_TEM L2
ENSG00000243725 TTC4 722134 sc-eQTL 6.15e-01 0.0852 0.169 0.919 CD4_TEM L2
ENSG00000006555 TTC22 636672 sc-eQTL 2.69e-01 0.15 0.135 0.919 CD8_CTL L2
ENSG00000162402 USP24 222631 sc-eQTL 1.48e-01 0.152 0.105 0.919 CD8_CTL L2
ENSG00000243725 TTC4 722134 sc-eQTL 3.65e-01 -0.142 0.157 0.919 CD8_CTL L2
ENSG00000006555 TTC22 636672 sc-eQTL 6.09e-01 -0.0773 0.151 0.919 CD8_Naive L2
ENSG00000162402 USP24 222631 sc-eQTL 7.48e-01 0.0355 0.11 0.919 CD8_Naive L2
ENSG00000243725 TTC4 722134 sc-eQTL 8.29e-02 0.279 0.16 0.919 CD8_Naive L2
ENSG00000006555 TTC22 636672 sc-eQTL 9.35e-01 -0.0134 0.163 0.912 CD8_TCM L2
ENSG00000162402 USP24 222631 sc-eQTL 3.35e-01 0.133 0.137 0.912 CD8_TCM L2
ENSG00000243725 TTC4 722134 sc-eQTL 8.11e-01 -0.0401 0.167 0.912 CD8_TCM L2
ENSG00000006555 TTC22 636672 sc-eQTL 5.42e-01 -0.1 0.164 0.92 CD8_TEM L2
ENSG00000162402 USP24 222631 sc-eQTL 6.79e-01 -0.0693 0.167 0.92 CD8_TEM L2
ENSG00000243725 TTC4 722134 sc-eQTL 8.63e-02 0.291 0.169 0.92 CD8_TEM L2
ENSG00000006555 TTC22 636672 sc-eQTL 5.86e-01 0.0798 0.146 0.92 MAIT L2
ENSG00000116133 DHCR24 550800 sc-eQTL 4.02e-01 -0.0908 0.108 0.92 MAIT L2
ENSG00000162402 USP24 222631 sc-eQTL 3.40e-01 0.126 0.132 0.92 MAIT L2
ENSG00000243725 TTC4 722134 sc-eQTL 8.54e-01 -0.0281 0.152 0.92 MAIT L2
ENSG00000006555 TTC22 636672 sc-eQTL 7.35e-01 0.0565 0.167 0.918 NK_CD56bright L2
ENSG00000116133 DHCR24 550800 sc-eQTL 7.39e-01 -0.0492 0.147 0.918 NK_CD56bright L2
ENSG00000162398 LEXM 631932 sc-eQTL 1.60e-02 -0.362 0.149 0.918 NK_CD56bright L2
ENSG00000162402 USP24 222631 sc-eQTL 9.59e-01 0.00661 0.13 0.918 NK_CD56bright L2
ENSG00000243725 TTC4 722134 sc-eQTL 2.36e-02 -0.369 0.162 0.918 NK_CD56bright L2
ENSG00000006555 TTC22 636672 sc-eQTL 9.93e-01 0.00117 0.139 0.92 NK_CD56dim L2
ENSG00000116133 DHCR24 550800 sc-eQTL 6.07e-01 -0.0748 0.145 0.92 NK_CD56dim L2
ENSG00000162398 LEXM 631932 sc-eQTL 8.60e-01 0.0253 0.143 0.92 NK_CD56dim L2
ENSG00000162402 USP24 222631 sc-eQTL 5.75e-01 -0.051 0.0907 0.92 NK_CD56dim L2
ENSG00000243725 TTC4 722134 sc-eQTL 1.79e-01 0.208 0.155 0.92 NK_CD56dim L2
ENSG00000006555 TTC22 636672 sc-eQTL 8.21e-01 -0.0373 0.165 0.918 NK_HLA L2
ENSG00000116133 DHCR24 550800 sc-eQTL 8.13e-01 -0.0381 0.161 0.918 NK_HLA L2
ENSG00000162398 LEXM 631932 sc-eQTL 3.31e-01 -0.152 0.156 0.918 NK_HLA L2
ENSG00000162402 USP24 222631 sc-eQTL 8.25e-01 0.0253 0.114 0.918 NK_HLA L2
ENSG00000243725 TTC4 722134 sc-eQTL 2.86e-01 -0.182 0.17 0.918 NK_HLA L2
ENSG00000006555 TTC22 636672 sc-eQTL 8.56e-01 0.0269 0.147 0.92 NK_cytokine L2
ENSG00000116133 DHCR24 550800 sc-eQTL 1.44e-01 -0.217 0.148 0.92 NK_cytokine L2
ENSG00000162398 LEXM 631932 sc-eQTL 4.68e-01 0.113 0.155 0.92 NK_cytokine L2
ENSG00000162402 USP24 222631 sc-eQTL 1.98e-01 -0.136 0.106 0.92 NK_cytokine L2
ENSG00000243725 TTC4 722134 sc-eQTL 6.59e-01 0.0694 0.157 0.92 NK_cytokine L2
ENSG00000006555 TTC22 636672 sc-eQTL 8.73e-01 -0.0338 0.211 0.922 PB L2
ENSG00000116133 DHCR24 550800 sc-eQTL 1.37e-01 0.277 0.185 0.922 PB L2
ENSG00000162402 USP24 222631 sc-eQTL 7.28e-01 0.0789 0.226 0.922 PB L2
ENSG00000243725 TTC4 722134 sc-eQTL 9.76e-01 -0.00648 0.219 0.922 PB L2
ENSG00000006555 TTC22 636672 sc-eQTL 4.83e-01 0.11 0.156 0.92 Pro_T L2
ENSG00000116133 DHCR24 550800 sc-eQTL 6.88e-01 0.0534 0.133 0.92 Pro_T L2
ENSG00000162402 USP24 222631 sc-eQTL 7.03e-01 -0.0574 0.151 0.92 Pro_T L2
ENSG00000243725 TTC4 722134 sc-eQTL 1.76e-01 0.224 0.165 0.92 Pro_T L2
ENSG00000006555 TTC22 636672 sc-eQTL 7.76e-01 0.0425 0.149 0.919 Treg L2
ENSG00000162402 USP24 222631 sc-eQTL 8.15e-02 0.231 0.132 0.919 Treg L2
ENSG00000243725 TTC4 722134 sc-eQTL 6.24e-01 -0.0819 0.167 0.919 Treg L2
ENSG00000116133 DHCR24 550800 sc-eQTL 1.87e-01 -0.179 0.135 0.917 cDC L2
ENSG00000162390 ACOT11 895738 sc-eQTL 8.31e-01 0.032 0.15 0.917 cDC L2
ENSG00000162402 USP24 222631 sc-eQTL 4.08e-01 -0.139 0.167 0.917 cDC L2
ENSG00000243725 TTC4 722134 sc-eQTL 1.80e-02 0.404 0.169 0.917 cDC L2
ENSG00000116133 DHCR24 550800 sc-eQTL 6.93e-02 -0.174 0.0951 0.919 cMono_IL1B L2
ENSG00000162402 USP24 222631 sc-eQTL 6.11e-01 0.0552 0.108 0.919 cMono_IL1B L2
ENSG00000243725 TTC4 722134 sc-eQTL 4.43e-01 0.127 0.166 0.919 cMono_IL1B L2
ENSG00000116133 DHCR24 550800 sc-eQTL 3.06e-01 -0.092 0.0896 0.919 cMono_S100A L2
ENSG00000162402 USP24 222631 sc-eQTL 2.75e-01 0.145 0.133 0.919 cMono_S100A L2
ENSG00000243725 TTC4 722134 sc-eQTL 7.15e-01 0.0609 0.167 0.919 cMono_S100A L2
ENSG00000006555 TTC22 636672 sc-eQTL 5.28e-01 -0.0972 0.154 0.915 gdT L2
ENSG00000116133 DHCR24 550800 sc-eQTL 8.46e-01 -0.0333 0.171 0.915 gdT L2
ENSG00000162402 USP24 222631 sc-eQTL 9.45e-01 -0.0113 0.165 0.915 gdT L2
ENSG00000243725 TTC4 722134 sc-eQTL 3.73e-01 -0.172 0.192 0.915 gdT L2
ENSG00000116133 DHCR24 550800 sc-eQTL 7.15e-01 0.044 0.12 0.918 intMono L2
ENSG00000162402 USP24 222631 sc-eQTL 2.03e-01 -0.195 0.153 0.918 intMono L2
ENSG00000243725 TTC4 722134 sc-eQTL 6.67e-01 -0.0703 0.163 0.918 intMono L2
ENSG00000116133 DHCR24 550800 sc-eQTL 3.10e-02 -0.263 0.121 0.921 ncMono L2
ENSG00000162402 USP24 222631 sc-eQTL 7.90e-01 -0.0368 0.138 0.921 ncMono L2
ENSG00000243725 TTC4 722134 sc-eQTL 6.84e-01 0.0667 0.163 0.921 ncMono L2
ENSG00000116133 DHCR24 550800 sc-eQTL 4.15e-01 0.118 0.145 0.912 pDC L2
ENSG00000162390 ACOT11 895738 sc-eQTL 7.30e-01 -0.0238 0.0689 0.912 pDC L2
ENSG00000162402 USP24 222631 sc-eQTL 2.80e-01 -0.126 0.116 0.912 pDC L2
ENSG00000243725 TTC4 722134 sc-eQTL 9.84e-01 0.00375 0.184 0.912 pDC L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000006555 TTC22 636672 sc-eQTL 2.18e-01 0.197 0.16 0.919 B_Memory LOneK1K
ENSG00000116133 DHCR24 550800 sc-eQTL 1.36e-01 0.239 0.16 0.919 B_Memory LOneK1K
ENSG00000162402 USP24 222631 sc-eQTL 7.54e-01 0.0359 0.115 0.919 B_Memory LOneK1K
ENSG00000243725 TTC4 722134 sc-eQTL 8.37e-01 0.0326 0.158 0.919 B_Memory LOneK1K
ENSG00000006555 TTC22 636672 sc-eQTL 2.65e-01 -0.184 0.165 0.919 B_Naive LOneK1K
ENSG00000116133 DHCR24 550800 sc-eQTL 4.51e-01 -0.112 0.149 0.919 B_Naive LOneK1K
ENSG00000162402 USP24 222631 sc-eQTL 3.08e-02 0.227 0.104 0.919 B_Naive LOneK1K
ENSG00000243725 TTC4 722134 sc-eQTL 2.18e-01 -0.193 0.156 0.919 B_Naive LOneK1K
ENSG00000116133 DHCR24 550800 sc-eQTL 5.58e-02 -0.177 0.0918 0.919 CD14_Mono LOneK1K
ENSG00000162402 USP24 222631 sc-eQTL 3.31e-01 0.0985 0.101 0.919 CD14_Mono LOneK1K
ENSG00000243725 TTC4 722134 sc-eQTL 5.43e-01 0.102 0.168 0.919 CD14_Mono LOneK1K
ENSG00000116133 DHCR24 550800 sc-eQTL 5.57e-01 -0.0675 0.115 0.92 CD16_Mono LOneK1K
ENSG00000162402 USP24 222631 sc-eQTL 1.66e-01 -0.179 0.128 0.92 CD16_Mono LOneK1K
ENSG00000243725 TTC4 722134 sc-eQTL 7.40e-01 0.0538 0.162 0.92 CD16_Mono LOneK1K
ENSG00000006555 TTC22 636672 sc-eQTL 8.74e-01 -0.0214 0.135 0.92 NK_CD56dim LOneK1K
ENSG00000116133 DHCR24 550800 sc-eQTL 3.85e-01 -0.123 0.141 0.92 NK_CD56dim LOneK1K
ENSG00000162398 LEXM 631932 sc-eQTL 6.55e-01 0.0593 0.133 0.92 NK_CD56dim LOneK1K
ENSG00000162402 USP24 222631 sc-eQTL 4.14e-01 -0.0687 0.084 0.92 NK_CD56dim LOneK1K
ENSG00000243725 TTC4 722134 sc-eQTL 3.37e-01 0.144 0.149 0.92 NK_CD56dim LOneK1K

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000162402 \N 222631 1.97e-06 2.46e-06 4.93e-07 1.99e-06 3.76e-07 6.43e-07 1.3e-06 4.35e-07 1.69e-06 7.21e-07 1.97e-06 1.45e-06 3.31e-06 1.23e-06 4.52e-07 1.2e-06 1.07e-06 1.35e-06 6.96e-07 7.64e-07 7.74e-07 1.94e-06 1.59e-06 7.82e-07 3.07e-06 7.53e-07 1.17e-06 8.7e-07 1.68e-06 1.8e-06 7.56e-07 2.62e-07 3.47e-07 6.91e-07 9.89e-07 6.76e-07 6.81e-07 3.34e-07 4.83e-07 2.14e-07 3.05e-07 2.62e-06 4.24e-07 1.93e-07 3.26e-07 2.95e-07 2.79e-07 1.44e-07 2.41e-07