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Genes within 1Mb (chr1:55418660:A:C):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000006555 TTC22 617337 sc-eQTL 1.60e-01 -0.114 0.0806 0.485 B L1
ENSG00000116133 DHCR24 531465 sc-eQTL 8.90e-01 -0.0106 0.0766 0.485 B L1
ENSG00000162402 USP24 203296 sc-eQTL 8.66e-01 -0.00791 0.0467 0.485 B L1
ENSG00000243725 TTC4 702799 sc-eQTL 2.98e-01 -0.0816 0.0781 0.485 B L1
ENSG00000006555 TTC22 617337 sc-eQTL 5.29e-01 -0.0394 0.0626 0.485 CD4T L1
ENSG00000162402 USP24 203296 sc-eQTL 4.44e-01 -0.0342 0.0446 0.485 CD4T L1
ENSG00000243725 TTC4 702799 sc-eQTL 8.19e-01 -0.0154 0.0672 0.485 CD4T L1
ENSG00000006555 TTC22 617337 sc-eQTL 1.71e-01 -0.0757 0.0551 0.485 CD8T L1
ENSG00000162402 USP24 203296 sc-eQTL 7.02e-01 -0.0175 0.0457 0.485 CD8T L1
ENSG00000243725 TTC4 702799 sc-eQTL 3.44e-02 -0.167 0.0785 0.485 CD8T L1
ENSG00000116133 DHCR24 531465 sc-eQTL 5.34e-01 -0.0456 0.0732 0.484 DC L1
ENSG00000162390 ACOT11 876403 sc-eQTL 2.48e-01 -0.0858 0.0741 0.484 DC L1
ENSG00000162402 USP24 203296 sc-eQTL 4.68e-01 0.0326 0.0448 0.484 DC L1
ENSG00000243725 TTC4 702799 sc-eQTL 7.10e-03 -0.233 0.0857 0.484 DC L1
ENSG00000116133 DHCR24 531465 sc-eQTL 3.15e-01 0.0535 0.0531 0.485 Mono L1
ENSG00000162402 USP24 203296 sc-eQTL 9.14e-01 0.00527 0.0487 0.485 Mono L1
ENSG00000243725 TTC4 702799 sc-eQTL 4.14e-01 -0.0701 0.0857 0.485 Mono L1
ENSG00000006555 TTC22 617337 sc-eQTL 9.48e-01 0.00482 0.0733 0.483 NK L1
ENSG00000116133 DHCR24 531465 sc-eQTL 1.51e-01 -0.106 0.0736 0.483 NK L1
ENSG00000162398 LEXM 612597 sc-eQTL 6.18e-01 0.0345 0.0691 0.483 NK L1
ENSG00000162402 USP24 203296 sc-eQTL 1.57e-01 -0.0592 0.0417 0.483 NK L1
ENSG00000243725 TTC4 702799 sc-eQTL 8.81e-01 -0.0119 0.0793 0.483 NK L1
ENSG00000006555 TTC22 617337 sc-eQTL 2.05e-01 -0.0822 0.0646 0.485 Other_T L1
ENSG00000116133 DHCR24 531465 sc-eQTL 1.26e-02 -0.125 0.0496 0.485 Other_T L1
ENSG00000162402 USP24 203296 sc-eQTL 8.91e-01 0.00817 0.0596 0.485 Other_T L1
ENSG00000243725 TTC4 702799 sc-eQTL 1.92e-01 -0.106 0.0808 0.485 Other_T L1
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000006555 TTC22 617337 sc-eQTL 5.34e-01 -0.0431 0.0692 0.492 B_Activated L2
ENSG00000116133 DHCR24 531465 sc-eQTL 2.66e-01 0.0905 0.0811 0.492 B_Activated L2
ENSG00000162402 USP24 203296 sc-eQTL 8.28e-01 -0.0193 0.0886 0.492 B_Activated L2
ENSG00000243725 TTC4 702799 sc-eQTL 7.47e-01 0.0274 0.0848 0.492 B_Activated L2
ENSG00000006555 TTC22 617337 sc-eQTL 7.47e-01 -0.028 0.0869 0.485 B_Intermediate L2
ENSG00000116133 DHCR24 531465 sc-eQTL 5.73e-01 0.0456 0.0806 0.485 B_Intermediate L2
ENSG00000162402 USP24 203296 sc-eQTL 2.74e-01 0.0696 0.0635 0.485 B_Intermediate L2
ENSG00000243725 TTC4 702799 sc-eQTL 6.50e-01 -0.0372 0.0819 0.485 B_Intermediate L2
ENSG00000006555 TTC22 617337 sc-eQTL 1.42e-01 0.12 0.0814 0.485 B_Memory L2
ENSG00000116133 DHCR24 531465 sc-eQTL 3.52e-01 -0.0756 0.081 0.485 B_Memory L2
ENSG00000162402 USP24 203296 sc-eQTL 5.58e-01 -0.0393 0.0669 0.485 B_Memory L2
ENSG00000243725 TTC4 702799 sc-eQTL 5.83e-01 -0.0471 0.0857 0.485 B_Memory L2
ENSG00000006555 TTC22 617337 sc-eQTL 8.24e-02 -0.15 0.0857 0.485 B_Naive1 L2
ENSG00000116133 DHCR24 531465 sc-eQTL 6.14e-01 -0.0409 0.0809 0.485 B_Naive1 L2
ENSG00000162402 USP24 203296 sc-eQTL 8.86e-02 -0.0986 0.0577 0.485 B_Naive1 L2
ENSG00000243725 TTC4 702799 sc-eQTL 8.98e-01 -0.0101 0.0791 0.485 B_Naive1 L2
ENSG00000006555 TTC22 617337 sc-eQTL 3.75e-01 -0.0763 0.0859 0.485 B_Naive2 L2
ENSG00000116133 DHCR24 531465 sc-eQTL 7.83e-01 -0.0206 0.0749 0.485 B_Naive2 L2
ENSG00000162402 USP24 203296 sc-eQTL 4.65e-01 0.0459 0.0628 0.485 B_Naive2 L2
ENSG00000243725 TTC4 702799 sc-eQTL 1.60e-01 -0.129 0.0917 0.485 B_Naive2 L2
ENSG00000006555 TTC22 617337 sc-eQTL 9.55e-01 0.00457 0.0808 0.48 CD4_CTL L2
ENSG00000162402 USP24 203296 sc-eQTL 4.57e-02 0.156 0.0777 0.48 CD4_CTL L2
ENSG00000243725 TTC4 702799 sc-eQTL 2.82e-01 0.0946 0.0876 0.48 CD4_CTL L2
ENSG00000006555 TTC22 617337 sc-eQTL 7.04e-01 -0.0281 0.0737 0.485 CD4_Naive L2
ENSG00000162402 USP24 203296 sc-eQTL 6.03e-01 -0.0252 0.0484 0.485 CD4_Naive L2
ENSG00000243725 TTC4 702799 sc-eQTL 9.53e-01 -0.00433 0.0738 0.485 CD4_Naive L2
ENSG00000006555 TTC22 617337 sc-eQTL 8.88e-01 -0.0109 0.0774 0.485 CD4_TCM L2
ENSG00000162402 USP24 203296 sc-eQTL 1.56e-01 -0.0822 0.0578 0.485 CD4_TCM L2
ENSG00000243725 TTC4 702799 sc-eQTL 9.53e-01 0.00496 0.0836 0.485 CD4_TCM L2
ENSG00000006555 TTC22 617337 sc-eQTL 2.17e-01 -0.111 0.0896 0.485 CD4_TEM L2
ENSG00000162402 USP24 203296 sc-eQTL 7.77e-01 0.0188 0.0663 0.485 CD4_TEM L2
ENSG00000243725 TTC4 702799 sc-eQTL 6.55e-01 -0.0392 0.0876 0.485 CD4_TEM L2
ENSG00000006555 TTC22 617337 sc-eQTL 3.73e-01 -0.0648 0.0727 0.485 CD8_CTL L2
ENSG00000162402 USP24 203296 sc-eQTL 1.16e-01 -0.0886 0.0561 0.485 CD8_CTL L2
ENSG00000243725 TTC4 702799 sc-eQTL 5.01e-02 -0.165 0.0837 0.485 CD8_CTL L2
ENSG00000006555 TTC22 617337 sc-eQTL 4.91e-01 -0.0554 0.0803 0.485 CD8_Naive L2
ENSG00000162402 USP24 203296 sc-eQTL 8.26e-02 0.102 0.0583 0.485 CD8_Naive L2
ENSG00000243725 TTC4 702799 sc-eQTL 5.44e-02 -0.165 0.0852 0.485 CD8_Naive L2
ENSG00000006555 TTC22 617337 sc-eQTL 4.84e-01 -0.062 0.0884 0.481 CD8_TCM L2
ENSG00000162402 USP24 203296 sc-eQTL 7.06e-01 -0.0283 0.0747 0.481 CD8_TCM L2
ENSG00000243725 TTC4 702799 sc-eQTL 1.34e-01 0.136 0.0904 0.481 CD8_TCM L2
ENSG00000006555 TTC22 617337 sc-eQTL 8.74e-01 0.0137 0.0863 0.484 CD8_TEM L2
ENSG00000162402 USP24 203296 sc-eQTL 1.07e-01 0.142 0.0874 0.484 CD8_TEM L2
ENSG00000243725 TTC4 702799 sc-eQTL 9.16e-01 -0.00949 0.0894 0.484 CD8_TEM L2
ENSG00000006555 TTC22 617337 sc-eQTL 7.39e-02 -0.138 0.0769 0.483 MAIT L2
ENSG00000116133 DHCR24 531465 sc-eQTL 9.60e-01 0.0029 0.0573 0.483 MAIT L2
ENSG00000162402 USP24 203296 sc-eQTL 5.16e-01 0.0453 0.0697 0.483 MAIT L2
ENSG00000243725 TTC4 702799 sc-eQTL 1.54e-01 -0.115 0.0802 0.483 MAIT L2
ENSG00000006555 TTC22 617337 sc-eQTL 2.20e-02 0.205 0.0887 0.482 NK_CD56bright L2
ENSG00000116133 DHCR24 531465 sc-eQTL 4.75e-01 -0.0567 0.0793 0.482 NK_CD56bright L2
ENSG00000162398 LEXM 612597 sc-eQTL 1.92e-02 0.189 0.0802 0.482 NK_CD56bright L2
ENSG00000162402 USP24 203296 sc-eQTL 7.78e-01 0.0198 0.07 0.482 NK_CD56bright L2
ENSG00000243725 TTC4 702799 sc-eQTL 7.78e-01 -0.0249 0.0883 0.482 NK_CD56bright L2
ENSG00000006555 TTC22 617337 sc-eQTL 9.27e-01 -0.00679 0.0739 0.483 NK_CD56dim L2
ENSG00000116133 DHCR24 531465 sc-eQTL 1.57e-01 -0.109 0.0767 0.483 NK_CD56dim L2
ENSG00000162398 LEXM 612597 sc-eQTL 9.62e-01 -0.00363 0.0758 0.483 NK_CD56dim L2
ENSG00000162402 USP24 203296 sc-eQTL 1.15e-01 -0.0757 0.0479 0.483 NK_CD56dim L2
ENSG00000243725 TTC4 702799 sc-eQTL 6.08e-01 -0.0424 0.0824 0.483 NK_CD56dim L2
ENSG00000006555 TTC22 617337 sc-eQTL 2.53e-01 -0.102 0.089 0.482 NK_HLA L2
ENSG00000116133 DHCR24 531465 sc-eQTL 6.93e-01 -0.0344 0.0871 0.482 NK_HLA L2
ENSG00000162398 LEXM 612597 sc-eQTL 7.60e-01 0.0259 0.0846 0.482 NK_HLA L2
ENSG00000162402 USP24 203296 sc-eQTL 6.13e-02 -0.116 0.0616 0.482 NK_HLA L2
ENSG00000243725 TTC4 702799 sc-eQTL 3.70e-01 0.0831 0.0926 0.482 NK_HLA L2
ENSG00000006555 TTC22 617337 sc-eQTL 9.25e-01 -0.00744 0.079 0.483 NK_cytokine L2
ENSG00000116133 DHCR24 531465 sc-eQTL 4.02e-01 -0.067 0.0797 0.483 NK_cytokine L2
ENSG00000162398 LEXM 612597 sc-eQTL 7.78e-01 0.0235 0.0833 0.483 NK_cytokine L2
ENSG00000162402 USP24 203296 sc-eQTL 4.78e-01 -0.0403 0.0567 0.483 NK_cytokine L2
ENSG00000243725 TTC4 702799 sc-eQTL 9.97e-01 -0.000318 0.0842 0.483 NK_cytokine L2
ENSG00000006555 TTC22 617337 sc-eQTL 6.60e-01 -0.0432 0.098 0.489 PB L2
ENSG00000116133 DHCR24 531465 sc-eQTL 5.61e-01 -0.0506 0.0868 0.489 PB L2
ENSG00000162402 USP24 203296 sc-eQTL 5.35e-01 -0.0655 0.105 0.489 PB L2
ENSG00000243725 TTC4 702799 sc-eQTL 3.62e-01 0.0931 0.102 0.489 PB L2
ENSG00000006555 TTC22 617337 sc-eQTL 6.08e-01 0.0419 0.0815 0.485 Pro_T L2
ENSG00000116133 DHCR24 531465 sc-eQTL 3.49e-01 -0.065 0.0692 0.485 Pro_T L2
ENSG00000162402 USP24 203296 sc-eQTL 8.60e-01 -0.0139 0.0786 0.485 Pro_T L2
ENSG00000243725 TTC4 702799 sc-eQTL 9.02e-01 0.0106 0.0864 0.485 Pro_T L2
ENSG00000006555 TTC22 617337 sc-eQTL 2.11e-01 -0.0984 0.0784 0.485 Treg L2
ENSG00000162402 USP24 203296 sc-eQTL 4.61e-01 -0.0517 0.07 0.485 Treg L2
ENSG00000243725 TTC4 702799 sc-eQTL 8.62e-01 -0.0154 0.0883 0.485 Treg L2
ENSG00000116133 DHCR24 531465 sc-eQTL 8.00e-01 -0.018 0.071 0.49 cDC L2
ENSG00000162390 ACOT11 876403 sc-eQTL 3.25e-01 -0.0768 0.0779 0.49 cDC L2
ENSG00000162402 USP24 203296 sc-eQTL 1.69e-01 0.12 0.0871 0.49 cDC L2
ENSG00000243725 TTC4 702799 sc-eQTL 2.20e-02 -0.204 0.0885 0.49 cDC L2
ENSG00000116133 DHCR24 531465 sc-eQTL 1.65e-01 0.0708 0.0508 0.485 cMono_IL1B L2
ENSG00000162402 USP24 203296 sc-eQTL 6.76e-01 -0.0242 0.0577 0.485 cMono_IL1B L2
ENSG00000243725 TTC4 702799 sc-eQTL 5.41e-01 -0.054 0.0882 0.485 cMono_IL1B L2
ENSG00000116133 DHCR24 531465 sc-eQTL 3.95e-01 0.0417 0.0489 0.485 cMono_S100A L2
ENSG00000162402 USP24 203296 sc-eQTL 1.37e-01 0.108 0.0723 0.485 cMono_S100A L2
ENSG00000243725 TTC4 702799 sc-eQTL 3.70e-01 -0.0816 0.0908 0.485 cMono_S100A L2
ENSG00000006555 TTC22 617337 sc-eQTL 6.78e-01 -0.036 0.0864 0.467 gdT L2
ENSG00000116133 DHCR24 531465 sc-eQTL 5.44e-02 -0.184 0.0951 0.467 gdT L2
ENSG00000162402 USP24 203296 sc-eQTL 8.88e-01 -0.013 0.0926 0.467 gdT L2
ENSG00000243725 TTC4 702799 sc-eQTL 1.25e-01 -0.166 0.108 0.467 gdT L2
ENSG00000116133 DHCR24 531465 sc-eQTL 6.59e-02 0.119 0.0644 0.484 intMono L2
ENSG00000162402 USP24 203296 sc-eQTL 8.52e-01 0.0155 0.0827 0.484 intMono L2
ENSG00000243725 TTC4 702799 sc-eQTL 9.10e-01 -0.00995 0.088 0.484 intMono L2
ENSG00000116133 DHCR24 531465 sc-eQTL 2.60e-01 0.0736 0.0651 0.482 ncMono L2
ENSG00000162402 USP24 203296 sc-eQTL 4.57e-01 0.0549 0.0736 0.482 ncMono L2
ENSG00000243725 TTC4 702799 sc-eQTL 3.18e-01 0.087 0.087 0.482 ncMono L2
ENSG00000116133 DHCR24 531465 sc-eQTL 7.06e-01 -0.0292 0.0771 0.46 pDC L2
ENSG00000162390 ACOT11 876403 sc-eQTL 1.85e-01 -0.0485 0.0364 0.46 pDC L2
ENSG00000162402 USP24 203296 sc-eQTL 4.66e-01 -0.0452 0.0618 0.46 pDC L2
ENSG00000243725 TTC4 702799 sc-eQTL 8.57e-01 -0.0176 0.0977 0.46 pDC L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000006555 TTC22 617337 sc-eQTL 7.85e-01 0.0227 0.0829 0.485 B_Memory LOneK1K
ENSG00000116133 DHCR24 531465 sc-eQTL 9.08e-01 -0.00959 0.0832 0.485 B_Memory LOneK1K
ENSG00000162402 USP24 203296 sc-eQTL 9.86e-01 -0.00102 0.0594 0.485 B_Memory LOneK1K
ENSG00000243725 TTC4 702799 sc-eQTL 4.09e-01 -0.0676 0.0818 0.485 B_Memory LOneK1K
ENSG00000006555 TTC22 617337 sc-eQTL 1.24e-01 -0.134 0.0868 0.485 B_Naive LOneK1K
ENSG00000116133 DHCR24 531465 sc-eQTL 6.12e-01 -0.0399 0.0786 0.485 B_Naive LOneK1K
ENSG00000162402 USP24 203296 sc-eQTL 2.67e-01 -0.0618 0.0555 0.485 B_Naive LOneK1K
ENSG00000243725 TTC4 702799 sc-eQTL 4.01e-01 -0.0697 0.0828 0.485 B_Naive LOneK1K
ENSG00000116133 DHCR24 531465 sc-eQTL 2.19e-01 0.0614 0.0498 0.485 CD14_Mono LOneK1K
ENSG00000162402 USP24 203296 sc-eQTL 8.05e-01 0.0135 0.0546 0.485 CD14_Mono LOneK1K
ENSG00000243725 TTC4 702799 sc-eQTL 3.32e-01 -0.0879 0.0903 0.485 CD14_Mono LOneK1K
ENSG00000116133 DHCR24 531465 sc-eQTL 1.27e-01 0.0941 0.0614 0.483 CD16_Mono LOneK1K
ENSG00000162402 USP24 203296 sc-eQTL 3.59e-01 0.0637 0.0694 0.483 CD16_Mono LOneK1K
ENSG00000243725 TTC4 702799 sc-eQTL 6.39e-01 0.0409 0.0871 0.483 CD16_Mono LOneK1K
ENSG00000006555 TTC22 617337 sc-eQTL 5.87e-01 -0.0389 0.0716 0.483 NK_CD56dim LOneK1K
ENSG00000116133 DHCR24 531465 sc-eQTL 1.25e-01 -0.115 0.0744 0.483 NK_CD56dim LOneK1K
ENSG00000162398 LEXM 612597 sc-eQTL 8.06e-01 0.0172 0.0703 0.483 NK_CD56dim LOneK1K
ENSG00000162402 USP24 203296 sc-eQTL 9.53e-02 -0.0742 0.0443 0.483 NK_CD56dim LOneK1K
ENSG00000243725 TTC4 702799 sc-eQTL 8.01e-01 -0.02 0.0794 0.483 NK_CD56dim LOneK1K

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000169174 PCSK9 379112 pQTL 0.0286 -0.0579 0.0264 0.0 0.0 0.461
ENSG00000234810 AL603840.1 89372 eQTL 4.7e-06 -0.133 0.029 0.00292 0.00289 0.457

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000234810 AL603840.1 89372 5.65e-06 5.93e-06 6.39e-07 3.4e-06 1.52e-06 1.56e-06 7.68e-06 1.25e-06 4.59e-06 2.85e-06 7.57e-06 2.83e-06 9.37e-06 2.13e-06 9.37e-07 3.91e-06 2.72e-06 3.84e-06 1.5e-06 1.63e-06 2.84e-06 5.49e-06 4.8e-06 1.93e-06 8.97e-06 2.11e-06 2.64e-06 1.73e-06 5.81e-06 6.2e-06 2.59e-06 4.73e-07 7.92e-07 2.33e-06 1.99e-06 1.38e-06 1.08e-06 5.46e-07 9.34e-07 7.42e-07 7.81e-07 7.37e-06 6.14e-07 1.51e-07 7.74e-07 1.1e-06 1.02e-06 6.82e-07 5.88e-07