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Genes within 1Mb (chr1:55418581:G:T):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000006555 TTC22 617258 sc-eQTL 8.38e-02 0.154 0.0886 0.299 B L1
ENSG00000116133 DHCR24 531386 sc-eQTL 6.50e-01 -0.0383 0.0843 0.299 B L1
ENSG00000162402 USP24 203217 sc-eQTL 8.74e-01 -0.0082 0.0515 0.299 B L1
ENSG00000243725 TTC4 702720 sc-eQTL 7.93e-01 0.0226 0.0862 0.299 B L1
ENSG00000006555 TTC22 617258 sc-eQTL 8.12e-01 0.0168 0.0705 0.299 CD4T L1
ENSG00000162402 USP24 203217 sc-eQTL 5.39e-02 0.0965 0.0498 0.299 CD4T L1
ENSG00000243725 TTC4 702720 sc-eQTL 8.08e-01 -0.0184 0.0755 0.299 CD4T L1
ENSG00000006555 TTC22 617258 sc-eQTL 5.98e-01 0.0325 0.0614 0.299 CD8T L1
ENSG00000162402 USP24 203217 sc-eQTL 9.66e-01 -0.00216 0.0508 0.299 CD8T L1
ENSG00000243725 TTC4 702720 sc-eQTL 2.22e-03 0.267 0.0862 0.299 CD8T L1
ENSG00000116133 DHCR24 531386 sc-eQTL 6.19e-02 0.15 0.0796 0.302 DC L1
ENSG00000162390 ACOT11 876324 sc-eQTL 9.27e-02 0.137 0.0809 0.302 DC L1
ENSG00000162402 USP24 203217 sc-eQTL 3.42e-01 -0.0467 0.0491 0.302 DC L1
ENSG00000243725 TTC4 702720 sc-eQTL 1.82e-02 0.225 0.0943 0.302 DC L1
ENSG00000116133 DHCR24 531386 sc-eQTL 5.37e-01 -0.0366 0.0592 0.299 Mono L1
ENSG00000162402 USP24 203217 sc-eQTL 3.87e-01 -0.0469 0.0541 0.299 Mono L1
ENSG00000243725 TTC4 702720 sc-eQTL 4.96e-01 0.065 0.0953 0.299 Mono L1
ENSG00000006555 TTC22 617258 sc-eQTL 7.71e-01 0.0236 0.0811 0.3 NK L1
ENSG00000116133 DHCR24 531386 sc-eQTL 3.77e-01 0.0724 0.0817 0.3 NK L1
ENSG00000162398 LEXM 612518 sc-eQTL 7.13e-01 0.0282 0.0765 0.3 NK L1
ENSG00000162402 USP24 203217 sc-eQTL 3.37e-01 0.0446 0.0463 0.3 NK L1
ENSG00000243725 TTC4 702720 sc-eQTL 2.03e-01 0.112 0.0875 0.3 NK L1
ENSG00000006555 TTC22 617258 sc-eQTL 3.45e-01 0.0684 0.0723 0.299 Other_T L1
ENSG00000116133 DHCR24 531386 sc-eQTL 2.31e-01 0.0672 0.056 0.299 Other_T L1
ENSG00000162402 USP24 203217 sc-eQTL 8.51e-01 -0.0125 0.0666 0.299 Other_T L1
ENSG00000243725 TTC4 702720 sc-eQTL 1.80e-02 0.213 0.0895 0.299 Other_T L1
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000006555 TTC22 617258 sc-eQTL 6.86e-01 -0.0309 0.0763 0.293 B_Activated L2
ENSG00000116133 DHCR24 531386 sc-eQTL 1.67e-01 -0.124 0.0892 0.293 B_Activated L2
ENSG00000162402 USP24 203217 sc-eQTL 1.92e-01 0.127 0.0971 0.293 B_Activated L2
ENSG00000243725 TTC4 702720 sc-eQTL 2.33e-01 0.111 0.0931 0.293 B_Activated L2
ENSG00000006555 TTC22 617258 sc-eQTL 3.80e-01 0.0839 0.0953 0.298 B_Intermediate L2
ENSG00000116133 DHCR24 531386 sc-eQTL 2.50e-01 -0.102 0.0883 0.298 B_Intermediate L2
ENSG00000162402 USP24 203217 sc-eQTL 3.90e-01 -0.0601 0.0698 0.298 B_Intermediate L2
ENSG00000243725 TTC4 702720 sc-eQTL 8.50e-02 0.155 0.0893 0.298 B_Intermediate L2
ENSG00000006555 TTC22 617258 sc-eQTL 6.41e-01 -0.0423 0.0906 0.3 B_Memory L2
ENSG00000116133 DHCR24 531386 sc-eQTL 7.99e-01 0.0229 0.09 0.3 B_Memory L2
ENSG00000162402 USP24 203217 sc-eQTL 2.71e-02 0.163 0.0733 0.3 B_Memory L2
ENSG00000243725 TTC4 702720 sc-eQTL 2.10e-01 0.119 0.0947 0.3 B_Memory L2
ENSG00000006555 TTC22 617258 sc-eQTL 5.29e-02 0.185 0.095 0.299 B_Naive1 L2
ENSG00000116133 DHCR24 531386 sc-eQTL 9.40e-01 0.00677 0.0899 0.299 B_Naive1 L2
ENSG00000162402 USP24 203217 sc-eQTL 1.98e-01 0.0829 0.0642 0.299 B_Naive1 L2
ENSG00000243725 TTC4 702720 sc-eQTL 2.25e-01 -0.106 0.0875 0.299 B_Naive1 L2
ENSG00000006555 TTC22 617258 sc-eQTL 3.80e-01 0.0839 0.0955 0.298 B_Naive2 L2
ENSG00000116133 DHCR24 531386 sc-eQTL 9.30e-01 0.00731 0.0833 0.298 B_Naive2 L2
ENSG00000162402 USP24 203217 sc-eQTL 6.55e-01 -0.0313 0.0699 0.298 B_Naive2 L2
ENSG00000243725 TTC4 702720 sc-eQTL 8.87e-01 0.0146 0.102 0.298 B_Naive2 L2
ENSG00000006555 TTC22 617258 sc-eQTL 8.86e-01 -0.0128 0.0896 0.298 CD4_CTL L2
ENSG00000162402 USP24 203217 sc-eQTL 1.97e-01 -0.112 0.0867 0.298 CD4_CTL L2
ENSG00000243725 TTC4 702720 sc-eQTL 5.77e-01 -0.0545 0.0974 0.298 CD4_CTL L2
ENSG00000006555 TTC22 617258 sc-eQTL 8.24e-01 -0.0185 0.0831 0.299 CD4_Naive L2
ENSG00000162402 USP24 203217 sc-eQTL 5.47e-02 0.104 0.0541 0.299 CD4_Naive L2
ENSG00000243725 TTC4 702720 sc-eQTL 9.95e-01 -0.000536 0.0831 0.299 CD4_Naive L2
ENSG00000006555 TTC22 617258 sc-eQTL 3.76e-01 0.0762 0.0858 0.299 CD4_TCM L2
ENSG00000162402 USP24 203217 sc-eQTL 1.78e-01 0.0867 0.0642 0.299 CD4_TCM L2
ENSG00000243725 TTC4 702720 sc-eQTL 4.57e-01 -0.0692 0.0928 0.299 CD4_TCM L2
ENSG00000006555 TTC22 617258 sc-eQTL 1.11e-01 0.158 0.0989 0.299 CD4_TEM L2
ENSG00000162402 USP24 203217 sc-eQTL 4.70e-01 0.053 0.0732 0.299 CD4_TEM L2
ENSG00000243725 TTC4 702720 sc-eQTL 5.12e-01 0.0636 0.0968 0.299 CD4_TEM L2
ENSG00000006555 TTC22 617258 sc-eQTL 3.95e-01 0.0686 0.0805 0.299 CD8_CTL L2
ENSG00000162402 USP24 203217 sc-eQTL 6.94e-01 0.0246 0.0625 0.299 CD8_CTL L2
ENSG00000243725 TTC4 702720 sc-eQTL 8.04e-02 0.163 0.0929 0.299 CD8_CTL L2
ENSG00000006555 TTC22 617258 sc-eQTL 7.06e-01 -0.0336 0.0889 0.299 CD8_Naive L2
ENSG00000162402 USP24 203217 sc-eQTL 4.16e-01 0.0528 0.0649 0.299 CD8_Naive L2
ENSG00000243725 TTC4 702720 sc-eQTL 2.17e-03 0.289 0.093 0.299 CD8_Naive L2
ENSG00000006555 TTC22 617258 sc-eQTL 3.30e-01 0.0922 0.0945 0.306 CD8_TCM L2
ENSG00000162402 USP24 203217 sc-eQTL 7.64e-01 -0.0241 0.08 0.306 CD8_TCM L2
ENSG00000243725 TTC4 702720 sc-eQTL 9.17e-01 -0.0101 0.0972 0.306 CD8_TCM L2
ENSG00000006555 TTC22 617258 sc-eQTL 6.10e-01 -0.0487 0.0954 0.297 CD8_TEM L2
ENSG00000162402 USP24 203217 sc-eQTL 8.07e-01 -0.0237 0.0973 0.297 CD8_TEM L2
ENSG00000243725 TTC4 702720 sc-eQTL 6.02e-01 -0.0516 0.0988 0.297 CD8_TEM L2
ENSG00000006555 TTC22 617258 sc-eQTL 4.30e-01 0.0676 0.0855 0.301 MAIT L2
ENSG00000116133 DHCR24 531386 sc-eQTL 9.49e-01 0.00405 0.0634 0.301 MAIT L2
ENSG00000162402 USP24 203217 sc-eQTL 5.61e-01 -0.0449 0.0771 0.301 MAIT L2
ENSG00000243725 TTC4 702720 sc-eQTL 5.49e-01 0.0535 0.089 0.301 MAIT L2
ENSG00000006555 TTC22 617258 sc-eQTL 6.64e-02 -0.176 0.0956 0.302 NK_CD56bright L2
ENSG00000116133 DHCR24 531386 sc-eQTL 3.27e-01 0.0834 0.0849 0.302 NK_CD56bright L2
ENSG00000162398 LEXM 612518 sc-eQTL 1.36e-01 -0.13 0.0868 0.302 NK_CD56bright L2
ENSG00000162402 USP24 203217 sc-eQTL 4.42e-01 -0.0578 0.075 0.302 NK_CD56bright L2
ENSG00000243725 TTC4 702720 sc-eQTL 3.63e-01 0.0861 0.0945 0.302 NK_CD56bright L2
ENSG00000006555 TTC22 617258 sc-eQTL 1.93e-01 0.107 0.0817 0.3 NK_CD56dim L2
ENSG00000116133 DHCR24 531386 sc-eQTL 3.94e-01 0.073 0.0855 0.3 NK_CD56dim L2
ENSG00000162398 LEXM 612518 sc-eQTL 4.51e-01 0.0634 0.0841 0.3 NK_CD56dim L2
ENSG00000162402 USP24 203217 sc-eQTL 1.86e-01 0.0707 0.0533 0.3 NK_CD56dim L2
ENSG00000243725 TTC4 702720 sc-eQTL 4.64e-01 0.0671 0.0915 0.3 NK_CD56dim L2
ENSG00000006555 TTC22 617258 sc-eQTL 7.01e-01 -0.0384 0.0997 0.297 NK_HLA L2
ENSG00000116133 DHCR24 531386 sc-eQTL 6.71e-02 0.178 0.0964 0.297 NK_HLA L2
ENSG00000162398 LEXM 612518 sc-eQTL 6.44e-01 -0.0437 0.0945 0.297 NK_HLA L2
ENSG00000162402 USP24 203217 sc-eQTL 2.48e-01 0.0801 0.0691 0.297 NK_HLA L2
ENSG00000243725 TTC4 702720 sc-eQTL 5.37e-01 -0.064 0.103 0.297 NK_HLA L2
ENSG00000006555 TTC22 617258 sc-eQTL 4.01e-01 0.073 0.0868 0.3 NK_cytokine L2
ENSG00000116133 DHCR24 531386 sc-eQTL 4.99e-01 0.0596 0.0879 0.3 NK_cytokine L2
ENSG00000162398 LEXM 612518 sc-eQTL 8.61e-01 0.0161 0.0917 0.3 NK_cytokine L2
ENSG00000162402 USP24 203217 sc-eQTL 6.37e-01 0.0295 0.0625 0.3 NK_cytokine L2
ENSG00000243725 TTC4 702720 sc-eQTL 4.81e-01 0.0653 0.0926 0.3 NK_cytokine L2
ENSG00000006555 TTC22 617258 sc-eQTL 5.67e-01 -0.0684 0.119 0.285 PB L2
ENSG00000116133 DHCR24 531386 sc-eQTL 1.03e-01 -0.172 0.104 0.285 PB L2
ENSG00000162402 USP24 203217 sc-eQTL 5.39e-01 0.0789 0.128 0.285 PB L2
ENSG00000243725 TTC4 702720 sc-eQTL 2.86e-01 -0.132 0.124 0.285 PB L2
ENSG00000006555 TTC22 617258 sc-eQTL 3.46e-01 -0.085 0.09 0.3 Pro_T L2
ENSG00000116133 DHCR24 531386 sc-eQTL 8.14e-01 -0.018 0.0766 0.3 Pro_T L2
ENSG00000162402 USP24 203217 sc-eQTL 6.50e-01 0.0395 0.0869 0.3 Pro_T L2
ENSG00000243725 TTC4 702720 sc-eQTL 3.05e-01 0.0979 0.0952 0.3 Pro_T L2
ENSG00000006555 TTC22 617258 sc-eQTL 9.97e-01 -0.000337 0.0877 0.299 Treg L2
ENSG00000162402 USP24 203217 sc-eQTL 9.40e-01 0.00586 0.0781 0.299 Treg L2
ENSG00000243725 TTC4 702720 sc-eQTL 7.45e-01 -0.0321 0.0983 0.299 Treg L2
ENSG00000116133 DHCR24 531386 sc-eQTL 3.86e-01 0.0677 0.0779 0.302 cDC L2
ENSG00000162390 ACOT11 876324 sc-eQTL 7.41e-02 0.153 0.085 0.302 cDC L2
ENSG00000162402 USP24 203217 sc-eQTL 2.07e-02 -0.221 0.0947 0.302 cDC L2
ENSG00000243725 TTC4 702720 sc-eQTL 2.21e-02 0.224 0.0972 0.302 cDC L2
ENSG00000116133 DHCR24 531386 sc-eQTL 3.37e-01 -0.0538 0.056 0.299 cMono_IL1B L2
ENSG00000162402 USP24 203217 sc-eQTL 4.35e-01 -0.0496 0.0634 0.299 cMono_IL1B L2
ENSG00000243725 TTC4 702720 sc-eQTL 8.54e-01 0.0178 0.0971 0.299 cMono_IL1B L2
ENSG00000116133 DHCR24 531386 sc-eQTL 5.43e-01 -0.0326 0.0536 0.299 cMono_S100A L2
ENSG00000162402 USP24 203217 sc-eQTL 1.70e-01 -0.109 0.0792 0.299 cMono_S100A L2
ENSG00000243725 TTC4 702720 sc-eQTL 3.57e-01 0.0918 0.0994 0.299 cMono_S100A L2
ENSG00000006555 TTC22 617258 sc-eQTL 9.52e-01 -0.00544 0.0893 0.309 gdT L2
ENSG00000116133 DHCR24 531386 sc-eQTL 1.89e-01 0.13 0.0989 0.309 gdT L2
ENSG00000162402 USP24 203217 sc-eQTL 7.84e-01 0.0262 0.0956 0.309 gdT L2
ENSG00000243725 TTC4 702720 sc-eQTL 2.37e-02 0.252 0.11 0.309 gdT L2
ENSG00000116133 DHCR24 531386 sc-eQTL 1.20e-01 -0.112 0.0715 0.296 intMono L2
ENSG00000162402 USP24 203217 sc-eQTL 5.48e-01 0.0551 0.0915 0.296 intMono L2
ENSG00000243725 TTC4 702720 sc-eQTL 7.60e-01 0.0298 0.0975 0.296 intMono L2
ENSG00000116133 DHCR24 531386 sc-eQTL 2.30e-01 -0.0833 0.0691 0.301 ncMono L2
ENSG00000162402 USP24 203217 sc-eQTL 9.52e-01 0.00474 0.0782 0.301 ncMono L2
ENSG00000243725 TTC4 702720 sc-eQTL 7.69e-01 -0.0272 0.0926 0.301 ncMono L2
ENSG00000116133 DHCR24 531386 sc-eQTL 2.25e-01 0.0989 0.0812 0.325 pDC L2
ENSG00000162390 ACOT11 876324 sc-eQTL 2.75e-01 0.0423 0.0386 0.325 pDC L2
ENSG00000162402 USP24 203217 sc-eQTL 7.86e-01 0.0178 0.0654 0.325 pDC L2
ENSG00000243725 TTC4 702720 sc-eQTL 7.10e-01 -0.0385 0.103 0.325 pDC L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000006555 TTC22 617258 sc-eQTL 6.02e-01 0.0476 0.0911 0.299 B_Memory LOneK1K
ENSG00000116133 DHCR24 531386 sc-eQTL 5.91e-01 -0.0492 0.0915 0.299 B_Memory LOneK1K
ENSG00000162402 USP24 203217 sc-eQTL 3.97e-01 0.0554 0.0653 0.299 B_Memory LOneK1K
ENSG00000243725 TTC4 702720 sc-eQTL 1.33e-01 0.135 0.0897 0.299 B_Memory LOneK1K
ENSG00000006555 TTC22 617258 sc-eQTL 5.68e-02 0.182 0.0953 0.299 B_Naive LOneK1K
ENSG00000116133 DHCR24 531386 sc-eQTL 8.60e-01 0.0153 0.0865 0.299 B_Naive LOneK1K
ENSG00000162402 USP24 203217 sc-eQTL 6.03e-01 0.0319 0.0613 0.299 B_Naive LOneK1K
ENSG00000243725 TTC4 702720 sc-eQTL 4.05e-01 -0.0761 0.0911 0.299 B_Naive LOneK1K
ENSG00000116133 DHCR24 531386 sc-eQTL 5.49e-01 -0.0332 0.0554 0.299 CD14_Mono LOneK1K
ENSG00000162402 USP24 203217 sc-eQTL 2.62e-01 -0.0679 0.0604 0.299 CD14_Mono LOneK1K
ENSG00000243725 TTC4 702720 sc-eQTL 3.91e-01 0.0861 0.1 0.299 CD14_Mono LOneK1K
ENSG00000116133 DHCR24 531386 sc-eQTL 1.78e-01 -0.0899 0.0665 0.3 CD16_Mono LOneK1K
ENSG00000162402 USP24 203217 sc-eQTL 7.42e-01 0.0247 0.0751 0.3 CD16_Mono LOneK1K
ENSG00000243725 TTC4 702720 sc-eQTL 8.04e-01 0.0234 0.0942 0.3 CD16_Mono LOneK1K
ENSG00000006555 TTC22 617258 sc-eQTL 2.43e-01 0.0936 0.08 0.3 NK_CD56dim LOneK1K
ENSG00000116133 DHCR24 531386 sc-eQTL 4.37e-01 0.0652 0.0837 0.3 NK_CD56dim LOneK1K
ENSG00000162398 LEXM 612518 sc-eQTL 4.62e-01 0.058 0.0787 0.3 NK_CD56dim LOneK1K
ENSG00000162402 USP24 203217 sc-eQTL 2.49e-01 0.0575 0.0498 0.3 NK_CD56dim LOneK1K
ENSG00000243725 TTC4 702720 sc-eQTL 3.94e-01 0.0759 0.0888 0.3 NK_CD56dim LOneK1K

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000234810 AL603840.1 89293 eQTL 1.39e-07 0.157 0.0297 0.0 0.0 0.352

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000234810 AL603840.1 89293 5.85e-06 8.3e-06 6.33e-07 3.6e-06 1.61e-06 1.85e-06 8.88e-06 1.26e-06 4.79e-06 3.1e-06 8.3e-06 3.25e-06 1.01e-05 3.14e-06 1.3e-06 4.5e-06 3.02e-06 3.8e-06 1.63e-06 1.6e-06 2.61e-06 6.84e-06 5.44e-06 2.01e-06 9.14e-06 2.29e-06 2.92e-06 1.97e-06 6.43e-06 6.39e-06 3.37e-06 4.43e-07 7.88e-07 2.24e-06 2.12e-06 1.35e-06 1.07e-06 5.42e-07 9.81e-07 6.17e-07 7.14e-07 8.5e-06 6.63e-07 1.69e-07 7.17e-07 8.35e-07 9.9e-07 6.85e-07 5.44e-07