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Genes within 1Mb (chr1:55414830:T:C):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000006555 TTC22 613507 sc-eQTL 1.67e-01 -0.11 0.0793 0.562 B L1
ENSG00000116133 DHCR24 527635 sc-eQTL 6.17e-01 0.0378 0.0753 0.562 B L1
ENSG00000162402 USP24 199466 sc-eQTL 9.15e-01 0.00491 0.046 0.562 B L1
ENSG00000243725 TTC4 698969 sc-eQTL 3.20e-01 -0.0766 0.0768 0.562 B L1
ENSG00000006555 TTC22 613507 sc-eQTL 7.92e-01 -0.0165 0.0623 0.562 CD4T L1
ENSG00000162402 USP24 199466 sc-eQTL 6.47e-01 -0.0204 0.0444 0.562 CD4T L1
ENSG00000243725 TTC4 698969 sc-eQTL 8.34e-01 -0.0141 0.0668 0.562 CD4T L1
ENSG00000006555 TTC22 613507 sc-eQTL 3.70e-01 -0.0492 0.0547 0.562 CD8T L1
ENSG00000162402 USP24 199466 sc-eQTL 9.98e-01 -0.00011 0.0454 0.562 CD8T L1
ENSG00000243725 TTC4 698969 sc-eQTL 1.43e-02 -0.192 0.0776 0.562 CD8T L1
ENSG00000116133 DHCR24 527635 sc-eQTL 1.05e-01 -0.116 0.0712 0.559 DC L1
ENSG00000162390 ACOT11 872573 sc-eQTL 2.70e-02 -0.16 0.0718 0.559 DC L1
ENSG00000162402 USP24 199466 sc-eQTL 7.12e-01 0.0162 0.0439 0.559 DC L1
ENSG00000243725 TTC4 698969 sc-eQTL 9.59e-02 -0.142 0.0848 0.559 DC L1
ENSG00000116133 DHCR24 527635 sc-eQTL 7.91e-01 0.014 0.0527 0.562 Mono L1
ENSG00000162402 USP24 199466 sc-eQTL 9.58e-01 0.00254 0.0482 0.562 Mono L1
ENSG00000243725 TTC4 698969 sc-eQTL 2.11e-01 -0.106 0.0846 0.562 Mono L1
ENSG00000006555 TTC22 613507 sc-eQTL 4.89e-01 0.0499 0.072 0.56 NK L1
ENSG00000116133 DHCR24 527635 sc-eQTL 4.72e-01 -0.0524 0.0726 0.56 NK L1
ENSG00000162398 LEXM 608767 sc-eQTL 9.24e-01 -0.00648 0.068 0.56 NK L1
ENSG00000162402 USP24 199466 sc-eQTL 4.88e-01 -0.0286 0.0412 0.56 NK L1
ENSG00000243725 TTC4 698969 sc-eQTL 9.14e-01 0.0084 0.078 0.56 NK L1
ENSG00000006555 TTC22 613507 sc-eQTL 4.45e-01 -0.0492 0.0644 0.562 Other_T L1
ENSG00000116133 DHCR24 527635 sc-eQTL 2.15e-02 -0.114 0.0494 0.562 Other_T L1
ENSG00000162402 USP24 199466 sc-eQTL 6.98e-01 -0.023 0.0593 0.562 Other_T L1
ENSG00000243725 TTC4 698969 sc-eQTL 1.77e-01 -0.109 0.0804 0.562 Other_T L1
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000006555 TTC22 613507 sc-eQTL 8.73e-01 0.0109 0.0684 0.566 B_Activated L2
ENSG00000116133 DHCR24 527635 sc-eQTL 4.52e-02 0.16 0.0794 0.566 B_Activated L2
ENSG00000162402 USP24 199466 sc-eQTL 4.59e-01 -0.0649 0.0874 0.566 B_Activated L2
ENSG00000243725 TTC4 698969 sc-eQTL 7.91e-01 -0.0222 0.0837 0.566 B_Activated L2
ENSG00000006555 TTC22 613507 sc-eQTL 2.98e-01 -0.0889 0.0853 0.562 B_Intermediate L2
ENSG00000116133 DHCR24 527635 sc-eQTL 2.45e-01 0.0922 0.0791 0.562 B_Intermediate L2
ENSG00000162402 USP24 199466 sc-eQTL 3.19e-01 0.0624 0.0625 0.562 B_Intermediate L2
ENSG00000243725 TTC4 698969 sc-eQTL 1.69e-01 -0.111 0.0802 0.562 B_Intermediate L2
ENSG00000006555 TTC22 613507 sc-eQTL 2.35e-01 0.0961 0.0807 0.56 B_Memory L2
ENSG00000116133 DHCR24 527635 sc-eQTL 7.49e-01 -0.0258 0.0803 0.56 B_Memory L2
ENSG00000162402 USP24 199466 sc-eQTL 3.70e-01 -0.0594 0.0661 0.56 B_Memory L2
ENSG00000243725 TTC4 698969 sc-eQTL 4.90e-01 -0.0586 0.0848 0.56 B_Memory L2
ENSG00000006555 TTC22 613507 sc-eQTL 6.60e-02 -0.156 0.0844 0.562 B_Naive1 L2
ENSG00000116133 DHCR24 527635 sc-eQTL 7.76e-01 -0.0228 0.0798 0.562 B_Naive1 L2
ENSG00000162402 USP24 199466 sc-eQTL 5.74e-01 -0.0322 0.0572 0.562 B_Naive1 L2
ENSG00000243725 TTC4 698969 sc-eQTL 7.02e-01 0.0298 0.0779 0.562 B_Naive1 L2
ENSG00000006555 TTC22 613507 sc-eQTL 4.19e-01 -0.0686 0.0847 0.562 B_Naive2 L2
ENSG00000116133 DHCR24 527635 sc-eQTL 9.80e-01 -0.00181 0.0738 0.562 B_Naive2 L2
ENSG00000162402 USP24 199466 sc-eQTL 8.25e-01 0.0137 0.062 0.562 B_Naive2 L2
ENSG00000243725 TTC4 698969 sc-eQTL 1.97e-01 -0.117 0.0904 0.562 B_Naive2 L2
ENSG00000006555 TTC22 613507 sc-eQTL 8.77e-01 0.0122 0.079 0.559 CD4_CTL L2
ENSG00000162402 USP24 199466 sc-eQTL 1.73e-01 0.105 0.0765 0.559 CD4_CTL L2
ENSG00000243725 TTC4 698969 sc-eQTL 4.25e-01 0.0687 0.0859 0.559 CD4_CTL L2
ENSG00000006555 TTC22 613507 sc-eQTL 8.75e-01 -0.0116 0.0733 0.562 CD4_Naive L2
ENSG00000162402 USP24 199466 sc-eQTL 6.69e-01 -0.0206 0.0482 0.562 CD4_Naive L2
ENSG00000243725 TTC4 698969 sc-eQTL 7.76e-01 -0.0209 0.0734 0.562 CD4_Naive L2
ENSG00000006555 TTC22 613507 sc-eQTL 9.35e-01 0.00626 0.0768 0.562 CD4_TCM L2
ENSG00000162402 USP24 199466 sc-eQTL 1.99e-01 -0.0738 0.0574 0.562 CD4_TCM L2
ENSG00000243725 TTC4 698969 sc-eQTL 6.56e-01 0.037 0.0829 0.562 CD4_TCM L2
ENSG00000006555 TTC22 613507 sc-eQTL 3.27e-01 -0.0869 0.0885 0.562 CD4_TEM L2
ENSG00000162402 USP24 199466 sc-eQTL 7.37e-01 -0.022 0.0654 0.562 CD4_TEM L2
ENSG00000243725 TTC4 698969 sc-eQTL 7.88e-01 -0.0233 0.0864 0.562 CD4_TEM L2
ENSG00000006555 TTC22 613507 sc-eQTL 4.95e-01 -0.0488 0.0714 0.562 CD8_CTL L2
ENSG00000162402 USP24 199466 sc-eQTL 1.50e-01 -0.0797 0.0552 0.562 CD8_CTL L2
ENSG00000243725 TTC4 698969 sc-eQTL 5.04e-02 -0.162 0.0822 0.562 CD8_CTL L2
ENSG00000006555 TTC22 613507 sc-eQTL 8.27e-01 0.0174 0.0792 0.562 CD8_Naive L2
ENSG00000162402 USP24 199466 sc-eQTL 3.11e-01 0.0586 0.0577 0.562 CD8_Naive L2
ENSG00000243725 TTC4 698969 sc-eQTL 1.65e-02 -0.202 0.0835 0.562 CD8_Naive L2
ENSG00000006555 TTC22 613507 sc-eQTL 1.37e-01 -0.126 0.0846 0.556 CD8_TCM L2
ENSG00000162402 USP24 199466 sc-eQTL 7.46e-01 0.0233 0.0718 0.556 CD8_TCM L2
ENSG00000243725 TTC4 698969 sc-eQTL 2.20e-01 0.107 0.087 0.556 CD8_TCM L2
ENSG00000006555 TTC22 613507 sc-eQTL 8.62e-01 -0.0147 0.0841 0.566 CD8_TEM L2
ENSG00000162402 USP24 199466 sc-eQTL 3.33e-01 0.083 0.0855 0.566 CD8_TEM L2
ENSG00000243725 TTC4 698969 sc-eQTL 5.68e-01 0.0498 0.087 0.566 CD8_TEM L2
ENSG00000006555 TTC22 613507 sc-eQTL 3.91e-01 -0.0656 0.0763 0.561 MAIT L2
ENSG00000116133 DHCR24 527635 sc-eQTL 6.71e-01 0.024 0.0566 0.561 MAIT L2
ENSG00000162402 USP24 199466 sc-eQTL 4.43e-01 0.0528 0.0687 0.561 MAIT L2
ENSG00000243725 TTC4 698969 sc-eQTL 3.71e-01 -0.0712 0.0794 0.561 MAIT L2
ENSG00000006555 TTC22 613507 sc-eQTL 3.77e-04 0.306 0.0847 0.562 NK_CD56bright L2
ENSG00000116133 DHCR24 527635 sc-eQTL 3.13e-01 -0.0779 0.077 0.562 NK_CD56bright L2
ENSG00000162398 LEXM 608767 sc-eQTL 8.04e-02 0.138 0.0785 0.562 NK_CD56bright L2
ENSG00000162402 USP24 199466 sc-eQTL 2.74e-01 0.0745 0.0679 0.562 NK_CD56bright L2
ENSG00000243725 TTC4 698969 sc-eQTL 5.99e-01 -0.0451 0.0858 0.562 NK_CD56bright L2
ENSG00000006555 TTC22 613507 sc-eQTL 7.86e-01 0.0198 0.0728 0.56 NK_CD56dim L2
ENSG00000116133 DHCR24 527635 sc-eQTL 2.42e-01 -0.0888 0.0757 0.56 NK_CD56dim L2
ENSG00000162398 LEXM 608767 sc-eQTL 7.00e-01 -0.0288 0.0746 0.56 NK_CD56dim L2
ENSG00000162402 USP24 199466 sc-eQTL 3.40e-01 -0.0452 0.0473 0.56 NK_CD56dim L2
ENSG00000243725 TTC4 698969 sc-eQTL 9.85e-01 0.00158 0.0812 0.56 NK_CD56dim L2
ENSG00000006555 TTC22 613507 sc-eQTL 8.87e-01 -0.0124 0.0874 0.555 NK_HLA L2
ENSG00000116133 DHCR24 527635 sc-eQTL 5.22e-01 -0.0547 0.0852 0.555 NK_HLA L2
ENSG00000162398 LEXM 608767 sc-eQTL 8.62e-01 -0.0144 0.0829 0.555 NK_HLA L2
ENSG00000162402 USP24 199466 sc-eQTL 4.03e-02 -0.124 0.0602 0.555 NK_HLA L2
ENSG00000243725 TTC4 698969 sc-eQTL 8.29e-01 0.0197 0.0908 0.555 NK_HLA L2
ENSG00000006555 TTC22 613507 sc-eQTL 2.89e-01 -0.0825 0.0775 0.56 NK_cytokine L2
ENSG00000116133 DHCR24 527635 sc-eQTL 8.37e-01 0.0162 0.0786 0.56 NK_cytokine L2
ENSG00000162398 LEXM 608767 sc-eQTL 9.21e-01 -0.00817 0.082 0.56 NK_cytokine L2
ENSG00000162402 USP24 199466 sc-eQTL 7.04e-01 -0.0213 0.0558 0.56 NK_cytokine L2
ENSG00000243725 TTC4 698969 sc-eQTL 3.99e-01 0.0698 0.0827 0.56 NK_cytokine L2
ENSG00000006555 TTC22 613507 sc-eQTL 6.27e-01 0.0513 0.105 0.567 PB L2
ENSG00000116133 DHCR24 527635 sc-eQTL 3.39e-01 -0.0893 0.0931 0.567 PB L2
ENSG00000162402 USP24 199466 sc-eQTL 3.79e-01 -0.0998 0.113 0.567 PB L2
ENSG00000243725 TTC4 698969 sc-eQTL 1.76e-01 0.148 0.109 0.567 PB L2
ENSG00000006555 TTC22 613507 sc-eQTL 4.60e-01 0.059 0.0798 0.563 Pro_T L2
ENSG00000116133 DHCR24 527635 sc-eQTL 4.73e-01 -0.0487 0.0678 0.563 Pro_T L2
ENSG00000162402 USP24 199466 sc-eQTL 2.96e-01 -0.0804 0.0768 0.563 Pro_T L2
ENSG00000243725 TTC4 698969 sc-eQTL 9.32e-01 0.00725 0.0846 0.563 Pro_T L2
ENSG00000006555 TTC22 613507 sc-eQTL 4.00e-01 -0.0654 0.0776 0.562 Treg L2
ENSG00000162402 USP24 199466 sc-eQTL 7.96e-01 0.0179 0.0692 0.562 Treg L2
ENSG00000243725 TTC4 698969 sc-eQTL 7.62e-01 -0.0264 0.0872 0.562 Treg L2
ENSG00000116133 DHCR24 527635 sc-eQTL 8.81e-01 -0.0104 0.069 0.559 cDC L2
ENSG00000162390 ACOT11 872573 sc-eQTL 5.55e-02 -0.145 0.075 0.559 cDC L2
ENSG00000162402 USP24 199466 sc-eQTL 3.67e-02 0.177 0.084 0.559 cDC L2
ENSG00000243725 TTC4 698969 sc-eQTL 3.67e-02 -0.181 0.0862 0.559 cDC L2
ENSG00000116133 DHCR24 527635 sc-eQTL 5.04e-01 0.0337 0.0504 0.562 cMono_IL1B L2
ENSG00000162402 USP24 199466 sc-eQTL 8.79e-01 -0.00871 0.057 0.562 cMono_IL1B L2
ENSG00000243725 TTC4 698969 sc-eQTL 4.74e-01 -0.0625 0.0872 0.562 cMono_IL1B L2
ENSG00000116133 DHCR24 527635 sc-eQTL 2.61e-01 0.0544 0.0483 0.562 cMono_S100A L2
ENSG00000162402 USP24 199466 sc-eQTL 1.73e-01 0.0978 0.0715 0.562 cMono_S100A L2
ENSG00000243725 TTC4 698969 sc-eQTL 2.79e-01 -0.0973 0.0897 0.562 cMono_S100A L2
ENSG00000006555 TTC22 613507 sc-eQTL 4.93e-01 -0.055 0.08 0.542 gdT L2
ENSG00000116133 DHCR24 527635 sc-eQTL 1.40e-02 -0.218 0.0875 0.542 gdT L2
ENSG00000162402 USP24 199466 sc-eQTL 4.53e-01 -0.0644 0.0857 0.542 gdT L2
ENSG00000243725 TTC4 698969 sc-eQTL 1.02e-01 -0.164 0.0996 0.542 gdT L2
ENSG00000116133 DHCR24 527635 sc-eQTL 1.55e-01 0.0905 0.0634 0.562 intMono L2
ENSG00000162402 USP24 199466 sc-eQTL 6.12e-01 0.0412 0.0812 0.562 intMono L2
ENSG00000243725 TTC4 698969 sc-eQTL 8.48e-01 -0.0166 0.0865 0.562 intMono L2
ENSG00000116133 DHCR24 527635 sc-eQTL 3.15e-01 0.0635 0.063 0.561 ncMono L2
ENSG00000162402 USP24 199466 sc-eQTL 5.33e-01 0.0445 0.0712 0.561 ncMono L2
ENSG00000243725 TTC4 698969 sc-eQTL 7.74e-01 0.0242 0.0843 0.561 ncMono L2
ENSG00000116133 DHCR24 527635 sc-eQTL 2.60e-01 -0.0829 0.0733 0.528 pDC L2
ENSG00000162390 ACOT11 872573 sc-eQTL 5.12e-02 -0.0679 0.0345 0.528 pDC L2
ENSG00000162402 USP24 199466 sc-eQTL 5.06e-01 -0.0393 0.059 0.528 pDC L2
ENSG00000243725 TTC4 698969 sc-eQTL 5.16e-01 0.0606 0.0931 0.528 pDC L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000006555 TTC22 613507 sc-eQTL 8.49e-01 -0.0156 0.0818 0.562 B_Memory LOneK1K
ENSG00000116133 DHCR24 527635 sc-eQTL 3.28e-01 0.0804 0.0819 0.562 B_Memory LOneK1K
ENSG00000162402 USP24 199466 sc-eQTL 9.32e-01 -0.00499 0.0587 0.562 B_Memory LOneK1K
ENSG00000243725 TTC4 698969 sc-eQTL 1.66e-01 -0.112 0.0806 0.562 B_Memory LOneK1K
ENSG00000006555 TTC22 613507 sc-eQTL 9.69e-02 -0.142 0.0851 0.562 B_Naive LOneK1K
ENSG00000116133 DHCR24 527635 sc-eQTL 7.17e-01 -0.028 0.0771 0.562 B_Naive LOneK1K
ENSG00000162402 USP24 199466 sc-eQTL 7.74e-01 -0.0157 0.0546 0.562 B_Naive LOneK1K
ENSG00000243725 TTC4 698969 sc-eQTL 6.99e-01 -0.0315 0.0814 0.562 B_Naive LOneK1K
ENSG00000116133 DHCR24 527635 sc-eQTL 6.83e-01 0.0202 0.0494 0.562 CD14_Mono LOneK1K
ENSG00000162402 USP24 199466 sc-eQTL 8.72e-01 0.00874 0.054 0.562 CD14_Mono LOneK1K
ENSG00000243725 TTC4 698969 sc-eQTL 2.26e-01 -0.108 0.0893 0.562 CD14_Mono LOneK1K
ENSG00000116133 DHCR24 527635 sc-eQTL 1.99e-01 0.0773 0.06 0.56 CD16_Mono LOneK1K
ENSG00000162402 USP24 199466 sc-eQTL 3.24e-01 0.0669 0.0677 0.56 CD16_Mono LOneK1K
ENSG00000243725 TTC4 698969 sc-eQTL 8.19e-01 -0.0195 0.085 0.56 CD16_Mono LOneK1K
ENSG00000006555 TTC22 613507 sc-eQTL 6.43e-01 -0.0328 0.0707 0.56 NK_CD56dim LOneK1K
ENSG00000116133 DHCR24 527635 sc-eQTL 4.45e-01 -0.0564 0.0738 0.56 NK_CD56dim LOneK1K
ENSG00000162398 LEXM 608767 sc-eQTL 6.55e-01 -0.0311 0.0694 0.56 NK_CD56dim LOneK1K
ENSG00000162402 USP24 199466 sc-eQTL 3.29e-01 -0.043 0.0439 0.56 NK_CD56dim LOneK1K
ENSG00000243725 TTC4 698969 sc-eQTL 6.74e-01 0.033 0.0784 0.56 NK_CD56dim LOneK1K

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000234810 AL603840.1 85542 eQTL 1.31e-06 -0.138 0.0283 0.0 0.0 0.465

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000234810 AL603840.1 85542 5.97e-06 7.73e-06 1.32e-06 3.75e-06 2.19e-06 2.67e-06 9.07e-06 1.75e-06 5.86e-06 4.11e-06 9.01e-06 4.23e-06 1.11e-05 3.18e-06 1.55e-06 5.69e-06 3.64e-06 4.31e-06 2.55e-06 2.62e-06 4.18e-06 7.65e-06 5.93e-06 3.03e-06 1.01e-05 3.09e-06 3.96e-06 2.54e-06 6.99e-06 7.88e-06 3.75e-06 9.46e-07 1.14e-06 3.01e-06 2.74e-06 2.21e-06 1.71e-06 1.53e-06 1.61e-06 1.02e-06 9.78e-07 8.15e-06 1.03e-06 2.07e-07 7.91e-07 1.3e-06 1.28e-06 7.96e-07 4.34e-07