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Genes within 1Mb (chr1:54569436:T:C):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000058799 YIPF1 679638 sc-eQTL 9.96e-01 -0.0011 0.206 0.052 DC L1
ENSG00000058804 NDC1 730973 sc-eQTL 7.25e-01 -0.0663 0.188 0.052 DC L1
ENSG00000081870 HSPB11 623507 sc-eQTL 3.64e-01 -0.161 0.177 0.052 DC L1
ENSG00000116133 DHCR24 -317759 sc-eQTL 1.38e-01 -0.246 0.166 0.052 DC L1
ENSG00000116205 TCEANC2 515852 sc-eQTL 8.91e-01 0.0256 0.186 0.052 DC L1
ENSG00000116209 TMEM59 515932 sc-eQTL 9.87e-01 0.00236 0.147 0.052 DC L1
ENSG00000116212 LRRC42 623351 sc-eQTL 1.73e-01 0.259 0.19 0.052 DC L1
ENSG00000116221 MRPL37 385395 sc-eQTL 3.84e-01 -0.172 0.197 0.052 DC L1
ENSG00000157216 SSBP3 155957 sc-eQTL 6.42e-01 0.0817 0.176 0.052 DC L1
ENSG00000162390 ACOT11 27179 sc-eQTL 5.22e-01 0.108 0.169 0.052 DC L1
ENSG00000162402 USP24 -645928 sc-eQTL 4.44e-01 0.078 0.102 0.052 DC L1
ENSG00000215883 CYB5RL 369400 sc-eQTL 2.23e-02 0.419 0.182 0.052 DC L1
ENSG00000243725 TTC4 -146425 sc-eQTL 2.61e-01 -0.223 0.198 0.052 DC L1
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000006555 TTC22 -231887 sc-eQTL 2.38e-01 -0.221 0.187 0.05 CD4_CTL L2
ENSG00000058799 YIPF1 679638 sc-eQTL 7.98e-02 0.347 0.197 0.05 CD4_CTL L2
ENSG00000058804 NDC1 730973 sc-eQTL 3.53e-01 -0.182 0.195 0.05 CD4_CTL L2
ENSG00000081870 HSPB11 623507 sc-eQTL 9.08e-01 -0.0237 0.204 0.05 CD4_CTL L2
ENSG00000116205 TCEANC2 515852 sc-eQTL 5.23e-01 -0.123 0.193 0.05 CD4_CTL L2
ENSG00000116209 TMEM59 515932 sc-eQTL 3.85e-02 -0.362 0.174 0.05 CD4_CTL L2
ENSG00000116212 LRRC42 623351 sc-eQTL 6.06e-02 -0.364 0.193 0.05 CD4_CTL L2
ENSG00000116221 MRPL37 385395 sc-eQTL 4.78e-01 -0.153 0.216 0.05 CD4_CTL L2
ENSG00000157216 SSBP3 155957 sc-eQTL 6.34e-01 0.0633 0.133 0.05 CD4_CTL L2
ENSG00000162402 USP24 -645928 sc-eQTL 6.33e-01 0.0871 0.182 0.05 CD4_CTL L2
ENSG00000243725 TTC4 -146425 sc-eQTL 1.25e-01 -0.313 0.203 0.05 CD4_CTL L2
ENSG00000006555 TTC22 -231887 sc-eQTL 1.63e-01 -0.267 0.191 0.05 CD8_TEM L2
ENSG00000058799 YIPF1 679638 sc-eQTL 2.15e-01 0.256 0.205 0.05 CD8_TEM L2
ENSG00000058804 NDC1 730973 sc-eQTL 3.84e-02 0.404 0.194 0.05 CD8_TEM L2
ENSG00000081870 HSPB11 623507 sc-eQTL 8.07e-01 0.0453 0.186 0.05 CD8_TEM L2
ENSG00000116205 TCEANC2 515852 sc-eQTL 9.06e-01 -0.0237 0.2 0.05 CD8_TEM L2
ENSG00000116209 TMEM59 515932 sc-eQTL 8.55e-01 -0.0354 0.194 0.05 CD8_TEM L2
ENSG00000116212 LRRC42 623351 sc-eQTL 1.97e-01 -0.269 0.208 0.05 CD8_TEM L2
ENSG00000116221 MRPL37 385395 sc-eQTL 7.07e-01 0.074 0.196 0.05 CD8_TEM L2
ENSG00000157216 SSBP3 155957 sc-eQTL 9.26e-01 -0.0172 0.186 0.05 CD8_TEM L2
ENSG00000162402 USP24 -645928 sc-eQTL 6.92e-01 0.0776 0.196 0.05 CD8_TEM L2
ENSG00000243725 TTC4 -146425 sc-eQTL 6.75e-01 -0.0834 0.199 0.05 CD8_TEM L2
ENSG00000006555 TTC22 -231887 sc-eQTL 1.63e-01 -0.277 0.198 0.05 NK_HLA L2
ENSG00000058799 YIPF1 679638 sc-eQTL 8.02e-01 0.0512 0.204 0.05 NK_HLA L2
ENSG00000058804 NDC1 730973 sc-eQTL 3.05e-01 -0.208 0.203 0.05 NK_HLA L2
ENSG00000081870 HSPB11 623507 sc-eQTL 6.34e-01 -0.092 0.193 0.05 NK_HLA L2
ENSG00000116133 DHCR24 -317759 sc-eQTL 1.26e-01 0.296 0.193 0.05 NK_HLA L2
ENSG00000116205 TCEANC2 515852 sc-eQTL 3.79e-01 -0.164 0.186 0.05 NK_HLA L2
ENSG00000116209 TMEM59 515932 sc-eQTL 4.47e-01 -0.141 0.185 0.05 NK_HLA L2
ENSG00000116212 LRRC42 623351 sc-eQTL 8.78e-01 -0.0309 0.201 0.05 NK_HLA L2
ENSG00000116221 MRPL37 385395 sc-eQTL 9.14e-01 -0.0221 0.204 0.05 NK_HLA L2
ENSG00000157216 SSBP3 155957 sc-eQTL 4.78e-01 0.118 0.167 0.05 NK_HLA L2
ENSG00000162398 LEXM -236627 sc-eQTL 9.14e-01 -0.0202 0.188 0.05 NK_HLA L2
ENSG00000162402 USP24 -645928 sc-eQTL 8.55e-01 0.0252 0.138 0.05 NK_HLA L2
ENSG00000243725 TTC4 -146425 sc-eQTL 4.84e-01 0.144 0.206 0.05 NK_HLA L2
ENSG00000006555 TTC22 -231887 sc-eQTL 2.25e-01 0.222 0.182 0.05 Pro_T L2
ENSG00000058799 YIPF1 679638 sc-eQTL 8.41e-02 -0.298 0.172 0.05 Pro_T L2
ENSG00000058804 NDC1 730973 sc-eQTL 9.88e-01 -0.0021 0.137 0.05 Pro_T L2
ENSG00000081870 HSPB11 623507 sc-eQTL 9.77e-01 -0.0035 0.123 0.05 Pro_T L2
ENSG00000116133 DHCR24 -317759 sc-eQTL 9.01e-01 -0.0194 0.155 0.05 Pro_T L2
ENSG00000116205 TCEANC2 515852 sc-eQTL 8.67e-01 -0.0318 0.19 0.05 Pro_T L2
ENSG00000116209 TMEM59 515932 sc-eQTL 5.70e-01 0.0749 0.131 0.05 Pro_T L2
ENSG00000116212 LRRC42 623351 sc-eQTL 5.93e-02 -0.318 0.168 0.05 Pro_T L2
ENSG00000116221 MRPL37 385395 sc-eQTL 8.63e-01 -0.0222 0.129 0.05 Pro_T L2
ENSG00000157216 SSBP3 155957 sc-eQTL 7.06e-01 -0.0547 0.144 0.05 Pro_T L2
ENSG00000162402 USP24 -645928 sc-eQTL 1.11e-01 0.28 0.175 0.05 Pro_T L2
ENSG00000215883 CYB5RL 369400 sc-eQTL 6.10e-01 0.0888 0.174 0.05 Pro_T L2
ENSG00000243725 TTC4 -146425 sc-eQTL 4.44e-01 0.148 0.193 0.05 Pro_T L2
ENSG00000058799 YIPF1 679638 sc-eQTL 9.43e-01 -0.0139 0.194 0.051 cDC L2
ENSG00000058804 NDC1 730973 sc-eQTL 2.98e-01 -0.205 0.196 0.051 cDC L2
ENSG00000081870 HSPB11 623507 sc-eQTL 2.78e-01 -0.225 0.207 0.051 cDC L2
ENSG00000116133 DHCR24 -317759 sc-eQTL 6.69e-02 -0.294 0.159 0.051 cDC L2
ENSG00000116205 TCEANC2 515852 sc-eQTL 3.83e-01 0.166 0.189 0.051 cDC L2
ENSG00000116209 TMEM59 515932 sc-eQTL 6.50e-01 -0.0732 0.161 0.051 cDC L2
ENSG00000116212 LRRC42 623351 sc-eQTL 9.39e-01 0.015 0.197 0.051 cDC L2
ENSG00000116221 MRPL37 385395 sc-eQTL 5.09e-02 -0.401 0.204 0.051 cDC L2
ENSG00000157216 SSBP3 155957 sc-eQTL 4.94e-01 0.13 0.19 0.051 cDC L2
ENSG00000162390 ACOT11 27179 sc-eQTL 1.85e-01 0.234 0.176 0.051 cDC L2
ENSG00000162402 USP24 -645928 sc-eQTL 2.67e-01 0.22 0.197 0.051 cDC L2
ENSG00000215883 CYB5RL 369400 sc-eQTL 1.29e-01 0.258 0.169 0.051 cDC L2
ENSG00000243725 TTC4 -146425 sc-eQTL 1.06e-01 -0.328 0.202 0.051 cDC L2
ENSG00000058799 YIPF1 679638 sc-eQTL 8.58e-01 -0.0354 0.198 0.051 intMono L2
ENSG00000058804 NDC1 730973 sc-eQTL 2.88e-01 0.216 0.202 0.051 intMono L2
ENSG00000081870 HSPB11 623507 sc-eQTL 9.89e-01 -0.00261 0.194 0.051 intMono L2
ENSG00000116133 DHCR24 -317759 sc-eQTL 4.15e-01 0.121 0.148 0.051 intMono L2
ENSG00000116205 TCEANC2 515852 sc-eQTL 3.00e-01 -0.191 0.184 0.051 intMono L2
ENSG00000116209 TMEM59 515932 sc-eQTL 7.82e-01 0.0376 0.136 0.051 intMono L2
ENSG00000116212 LRRC42 623351 sc-eQTL 8.72e-01 0.0343 0.213 0.051 intMono L2
ENSG00000116221 MRPL37 385395 sc-eQTL 8.85e-01 0.0301 0.207 0.051 intMono L2
ENSG00000157216 SSBP3 155957 sc-eQTL 6.94e-01 0.0834 0.212 0.051 intMono L2
ENSG00000162402 USP24 -645928 sc-eQTL 8.45e-01 0.037 0.189 0.051 intMono L2
ENSG00000243725 TTC4 -146425 sc-eQTL 3.68e-01 -0.181 0.201 0.051 intMono L2
ENSG00000058799 YIPF1 679638 sc-eQTL 5.74e-01 0.105 0.186 0.052 ncMono L2
ENSG00000058804 NDC1 730973 sc-eQTL 7.73e-01 0.0531 0.184 0.052 ncMono L2
ENSG00000081870 HSPB11 623507 sc-eQTL 5.77e-02 0.37 0.194 0.052 ncMono L2
ENSG00000116133 DHCR24 -317759 sc-eQTL 6.07e-01 -0.0722 0.14 0.052 ncMono L2
ENSG00000116205 TCEANC2 515852 sc-eQTL 4.67e-01 -0.127 0.175 0.052 ncMono L2
ENSG00000116209 TMEM59 515932 sc-eQTL 3.08e-01 0.143 0.14 0.052 ncMono L2
ENSG00000116212 LRRC42 623351 sc-eQTL 1.77e-01 0.258 0.19 0.052 ncMono L2
ENSG00000116221 MRPL37 385395 sc-eQTL 9.42e-01 -0.0132 0.181 0.052 ncMono L2
ENSG00000157216 SSBP3 155957 sc-eQTL 9.52e-01 0.012 0.198 0.052 ncMono L2
ENSG00000162402 USP24 -645928 sc-eQTL 5.48e-02 0.302 0.156 0.052 ncMono L2
ENSG00000243725 TTC4 -146425 sc-eQTL 6.64e-01 0.0813 0.187 0.052 ncMono L2
ENSG00000058799 YIPF1 679638 sc-eQTL 9.48e-01 -0.0141 0.213 0.051 pDC L2
ENSG00000058804 NDC1 730973 sc-eQTL 8.26e-01 -0.047 0.213 0.051 pDC L2
ENSG00000081870 HSPB11 623507 sc-eQTL 9.10e-01 -0.0211 0.187 0.051 pDC L2
ENSG00000116133 DHCR24 -317759 sc-eQTL 8.92e-01 -0.0233 0.172 0.051 pDC L2
ENSG00000116205 TCEANC2 515852 sc-eQTL 4.90e-01 0.142 0.206 0.051 pDC L2
ENSG00000116209 TMEM59 515932 sc-eQTL 9.59e-01 0.00848 0.165 0.051 pDC L2
ENSG00000116212 LRRC42 623351 sc-eQTL 1.56e-01 0.29 0.204 0.051 pDC L2
ENSG00000116221 MRPL37 385395 sc-eQTL 9.47e-01 0.0145 0.219 0.051 pDC L2
ENSG00000157216 SSBP3 155957 sc-eQTL 8.93e-01 0.0261 0.194 0.051 pDC L2
ENSG00000162390 ACOT11 27179 sc-eQTL 4.48e-01 -0.062 0.0815 0.051 pDC L2
ENSG00000162402 USP24 -645928 sc-eQTL 3.00e-01 0.143 0.137 0.051 pDC L2
ENSG00000215883 CYB5RL 369400 sc-eQTL 1.16e-01 0.296 0.187 0.051 pDC L2
ENSG00000243725 TTC4 -146425 sc-eQTL 8.33e-01 0.0459 0.218 0.051 pDC L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000184313 MROH7 -72318 eQTL 0.0167 -0.126 0.0525 0.0 0.0 0.0667

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina