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Genes within 1Mb (chr1:54569185:C:T):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000058799 YIPF1 679387 sc-eQTL 9.96e-01 -0.0011 0.206 0.052 DC L1
ENSG00000058804 NDC1 730722 sc-eQTL 7.25e-01 -0.0663 0.188 0.052 DC L1
ENSG00000081870 HSPB11 623256 sc-eQTL 3.64e-01 -0.161 0.177 0.052 DC L1
ENSG00000116133 DHCR24 -318010 sc-eQTL 1.38e-01 -0.246 0.166 0.052 DC L1
ENSG00000116205 TCEANC2 515601 sc-eQTL 8.91e-01 0.0256 0.186 0.052 DC L1
ENSG00000116209 TMEM59 515681 sc-eQTL 9.87e-01 0.00236 0.147 0.052 DC L1
ENSG00000116212 LRRC42 623100 sc-eQTL 1.73e-01 0.259 0.19 0.052 DC L1
ENSG00000116221 MRPL37 385144 sc-eQTL 3.84e-01 -0.172 0.197 0.052 DC L1
ENSG00000157216 SSBP3 155706 sc-eQTL 6.42e-01 0.0817 0.176 0.052 DC L1
ENSG00000162390 ACOT11 26928 sc-eQTL 5.22e-01 0.108 0.169 0.052 DC L1
ENSG00000162402 USP24 -646179 sc-eQTL 4.44e-01 0.078 0.102 0.052 DC L1
ENSG00000215883 CYB5RL 369149 sc-eQTL 2.23e-02 0.419 0.182 0.052 DC L1
ENSG00000243725 TTC4 -146676 sc-eQTL 2.61e-01 -0.223 0.198 0.052 DC L1
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000006555 TTC22 -232138 sc-eQTL 2.38e-01 -0.221 0.187 0.05 CD4_CTL L2
ENSG00000058799 YIPF1 679387 sc-eQTL 7.98e-02 0.347 0.197 0.05 CD4_CTL L2
ENSG00000058804 NDC1 730722 sc-eQTL 3.53e-01 -0.182 0.195 0.05 CD4_CTL L2
ENSG00000081870 HSPB11 623256 sc-eQTL 9.08e-01 -0.0237 0.204 0.05 CD4_CTL L2
ENSG00000116205 TCEANC2 515601 sc-eQTL 5.23e-01 -0.123 0.193 0.05 CD4_CTL L2
ENSG00000116209 TMEM59 515681 sc-eQTL 3.85e-02 -0.362 0.174 0.05 CD4_CTL L2
ENSG00000116212 LRRC42 623100 sc-eQTL 6.06e-02 -0.364 0.193 0.05 CD4_CTL L2
ENSG00000116221 MRPL37 385144 sc-eQTL 4.78e-01 -0.153 0.216 0.05 CD4_CTL L2
ENSG00000157216 SSBP3 155706 sc-eQTL 6.34e-01 0.0633 0.133 0.05 CD4_CTL L2
ENSG00000162402 USP24 -646179 sc-eQTL 6.33e-01 0.0871 0.182 0.05 CD4_CTL L2
ENSG00000243725 TTC4 -146676 sc-eQTL 1.25e-01 -0.313 0.203 0.05 CD4_CTL L2
ENSG00000006555 TTC22 -232138 sc-eQTL 1.63e-01 -0.267 0.191 0.05 CD8_TEM L2
ENSG00000058799 YIPF1 679387 sc-eQTL 2.15e-01 0.256 0.205 0.05 CD8_TEM L2
ENSG00000058804 NDC1 730722 sc-eQTL 3.84e-02 0.404 0.194 0.05 CD8_TEM L2
ENSG00000081870 HSPB11 623256 sc-eQTL 8.07e-01 0.0453 0.186 0.05 CD8_TEM L2
ENSG00000116205 TCEANC2 515601 sc-eQTL 9.06e-01 -0.0237 0.2 0.05 CD8_TEM L2
ENSG00000116209 TMEM59 515681 sc-eQTL 8.55e-01 -0.0354 0.194 0.05 CD8_TEM L2
ENSG00000116212 LRRC42 623100 sc-eQTL 1.97e-01 -0.269 0.208 0.05 CD8_TEM L2
ENSG00000116221 MRPL37 385144 sc-eQTL 7.07e-01 0.074 0.196 0.05 CD8_TEM L2
ENSG00000157216 SSBP3 155706 sc-eQTL 9.26e-01 -0.0172 0.186 0.05 CD8_TEM L2
ENSG00000162402 USP24 -646179 sc-eQTL 6.92e-01 0.0776 0.196 0.05 CD8_TEM L2
ENSG00000243725 TTC4 -146676 sc-eQTL 6.75e-01 -0.0834 0.199 0.05 CD8_TEM L2
ENSG00000006555 TTC22 -232138 sc-eQTL 1.63e-01 -0.277 0.198 0.05 NK_HLA L2
ENSG00000058799 YIPF1 679387 sc-eQTL 8.02e-01 0.0512 0.204 0.05 NK_HLA L2
ENSG00000058804 NDC1 730722 sc-eQTL 3.05e-01 -0.208 0.203 0.05 NK_HLA L2
ENSG00000081870 HSPB11 623256 sc-eQTL 6.34e-01 -0.092 0.193 0.05 NK_HLA L2
ENSG00000116133 DHCR24 -318010 sc-eQTL 1.26e-01 0.296 0.193 0.05 NK_HLA L2
ENSG00000116205 TCEANC2 515601 sc-eQTL 3.79e-01 -0.164 0.186 0.05 NK_HLA L2
ENSG00000116209 TMEM59 515681 sc-eQTL 4.47e-01 -0.141 0.185 0.05 NK_HLA L2
ENSG00000116212 LRRC42 623100 sc-eQTL 8.78e-01 -0.0309 0.201 0.05 NK_HLA L2
ENSG00000116221 MRPL37 385144 sc-eQTL 9.14e-01 -0.0221 0.204 0.05 NK_HLA L2
ENSG00000157216 SSBP3 155706 sc-eQTL 4.78e-01 0.118 0.167 0.05 NK_HLA L2
ENSG00000162398 LEXM -236878 sc-eQTL 9.14e-01 -0.0202 0.188 0.05 NK_HLA L2
ENSG00000162402 USP24 -646179 sc-eQTL 8.55e-01 0.0252 0.138 0.05 NK_HLA L2
ENSG00000243725 TTC4 -146676 sc-eQTL 4.84e-01 0.144 0.206 0.05 NK_HLA L2
ENSG00000006555 TTC22 -232138 sc-eQTL 2.25e-01 0.222 0.182 0.05 Pro_T L2
ENSG00000058799 YIPF1 679387 sc-eQTL 8.41e-02 -0.298 0.172 0.05 Pro_T L2
ENSG00000058804 NDC1 730722 sc-eQTL 9.88e-01 -0.0021 0.137 0.05 Pro_T L2
ENSG00000081870 HSPB11 623256 sc-eQTL 9.77e-01 -0.0035 0.123 0.05 Pro_T L2
ENSG00000116133 DHCR24 -318010 sc-eQTL 9.01e-01 -0.0194 0.155 0.05 Pro_T L2
ENSG00000116205 TCEANC2 515601 sc-eQTL 8.67e-01 -0.0318 0.19 0.05 Pro_T L2
ENSG00000116209 TMEM59 515681 sc-eQTL 5.70e-01 0.0749 0.131 0.05 Pro_T L2
ENSG00000116212 LRRC42 623100 sc-eQTL 5.93e-02 -0.318 0.168 0.05 Pro_T L2
ENSG00000116221 MRPL37 385144 sc-eQTL 8.63e-01 -0.0222 0.129 0.05 Pro_T L2
ENSG00000157216 SSBP3 155706 sc-eQTL 7.06e-01 -0.0547 0.144 0.05 Pro_T L2
ENSG00000162402 USP24 -646179 sc-eQTL 1.11e-01 0.28 0.175 0.05 Pro_T L2
ENSG00000215883 CYB5RL 369149 sc-eQTL 6.10e-01 0.0888 0.174 0.05 Pro_T L2
ENSG00000243725 TTC4 -146676 sc-eQTL 4.44e-01 0.148 0.193 0.05 Pro_T L2
ENSG00000058799 YIPF1 679387 sc-eQTL 9.43e-01 -0.0139 0.194 0.051 cDC L2
ENSG00000058804 NDC1 730722 sc-eQTL 2.98e-01 -0.205 0.196 0.051 cDC L2
ENSG00000081870 HSPB11 623256 sc-eQTL 2.78e-01 -0.225 0.207 0.051 cDC L2
ENSG00000116133 DHCR24 -318010 sc-eQTL 6.69e-02 -0.294 0.159 0.051 cDC L2
ENSG00000116205 TCEANC2 515601 sc-eQTL 3.83e-01 0.166 0.189 0.051 cDC L2
ENSG00000116209 TMEM59 515681 sc-eQTL 6.50e-01 -0.0732 0.161 0.051 cDC L2
ENSG00000116212 LRRC42 623100 sc-eQTL 9.39e-01 0.015 0.197 0.051 cDC L2
ENSG00000116221 MRPL37 385144 sc-eQTL 5.09e-02 -0.401 0.204 0.051 cDC L2
ENSG00000157216 SSBP3 155706 sc-eQTL 4.94e-01 0.13 0.19 0.051 cDC L2
ENSG00000162390 ACOT11 26928 sc-eQTL 1.85e-01 0.234 0.176 0.051 cDC L2
ENSG00000162402 USP24 -646179 sc-eQTL 2.67e-01 0.22 0.197 0.051 cDC L2
ENSG00000215883 CYB5RL 369149 sc-eQTL 1.29e-01 0.258 0.169 0.051 cDC L2
ENSG00000243725 TTC4 -146676 sc-eQTL 1.06e-01 -0.328 0.202 0.051 cDC L2
ENSG00000058799 YIPF1 679387 sc-eQTL 8.58e-01 -0.0354 0.198 0.051 intMono L2
ENSG00000058804 NDC1 730722 sc-eQTL 2.88e-01 0.216 0.202 0.051 intMono L2
ENSG00000081870 HSPB11 623256 sc-eQTL 9.89e-01 -0.00261 0.194 0.051 intMono L2
ENSG00000116133 DHCR24 -318010 sc-eQTL 4.15e-01 0.121 0.148 0.051 intMono L2
ENSG00000116205 TCEANC2 515601 sc-eQTL 3.00e-01 -0.191 0.184 0.051 intMono L2
ENSG00000116209 TMEM59 515681 sc-eQTL 7.82e-01 0.0376 0.136 0.051 intMono L2
ENSG00000116212 LRRC42 623100 sc-eQTL 8.72e-01 0.0343 0.213 0.051 intMono L2
ENSG00000116221 MRPL37 385144 sc-eQTL 8.85e-01 0.0301 0.207 0.051 intMono L2
ENSG00000157216 SSBP3 155706 sc-eQTL 6.94e-01 0.0834 0.212 0.051 intMono L2
ENSG00000162402 USP24 -646179 sc-eQTL 8.45e-01 0.037 0.189 0.051 intMono L2
ENSG00000243725 TTC4 -146676 sc-eQTL 3.68e-01 -0.181 0.201 0.051 intMono L2
ENSG00000058799 YIPF1 679387 sc-eQTL 5.74e-01 0.105 0.186 0.052 ncMono L2
ENSG00000058804 NDC1 730722 sc-eQTL 7.73e-01 0.0531 0.184 0.052 ncMono L2
ENSG00000081870 HSPB11 623256 sc-eQTL 5.77e-02 0.37 0.194 0.052 ncMono L2
ENSG00000116133 DHCR24 -318010 sc-eQTL 6.07e-01 -0.0722 0.14 0.052 ncMono L2
ENSG00000116205 TCEANC2 515601 sc-eQTL 4.67e-01 -0.127 0.175 0.052 ncMono L2
ENSG00000116209 TMEM59 515681 sc-eQTL 3.08e-01 0.143 0.14 0.052 ncMono L2
ENSG00000116212 LRRC42 623100 sc-eQTL 1.77e-01 0.258 0.19 0.052 ncMono L2
ENSG00000116221 MRPL37 385144 sc-eQTL 9.42e-01 -0.0132 0.181 0.052 ncMono L2
ENSG00000157216 SSBP3 155706 sc-eQTL 9.52e-01 0.012 0.198 0.052 ncMono L2
ENSG00000162402 USP24 -646179 sc-eQTL 5.48e-02 0.302 0.156 0.052 ncMono L2
ENSG00000243725 TTC4 -146676 sc-eQTL 6.64e-01 0.0813 0.187 0.052 ncMono L2
ENSG00000058799 YIPF1 679387 sc-eQTL 9.48e-01 -0.0141 0.213 0.051 pDC L2
ENSG00000058804 NDC1 730722 sc-eQTL 8.26e-01 -0.047 0.213 0.051 pDC L2
ENSG00000081870 HSPB11 623256 sc-eQTL 9.10e-01 -0.0211 0.187 0.051 pDC L2
ENSG00000116133 DHCR24 -318010 sc-eQTL 8.92e-01 -0.0233 0.172 0.051 pDC L2
ENSG00000116205 TCEANC2 515601 sc-eQTL 4.90e-01 0.142 0.206 0.051 pDC L2
ENSG00000116209 TMEM59 515681 sc-eQTL 9.59e-01 0.00848 0.165 0.051 pDC L2
ENSG00000116212 LRRC42 623100 sc-eQTL 1.56e-01 0.29 0.204 0.051 pDC L2
ENSG00000116221 MRPL37 385144 sc-eQTL 9.47e-01 0.0145 0.219 0.051 pDC L2
ENSG00000157216 SSBP3 155706 sc-eQTL 8.93e-01 0.0261 0.194 0.051 pDC L2
ENSG00000162390 ACOT11 26928 sc-eQTL 4.48e-01 -0.062 0.0815 0.051 pDC L2
ENSG00000162402 USP24 -646179 sc-eQTL 3.00e-01 0.143 0.137 0.051 pDC L2
ENSG00000215883 CYB5RL 369149 sc-eQTL 1.16e-01 0.296 0.187 0.051 pDC L2
ENSG00000243725 TTC4 -146676 sc-eQTL 8.33e-01 0.0459 0.218 0.051 pDC L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000184313 MROH7 -72569 eQTL 0.0167 -0.126 0.0525 0.0 0.0 0.0667

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina