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Genes within 1Mb (chr1:54220740:C:G):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000006555 TTC22 -580583 sc-eQTL 3.75e-02 0.385 0.184 0.05 CD4_CTL L2
ENSG00000058799 YIPF1 330942 sc-eQTL 1.03e-01 -0.321 0.196 0.05 CD4_CTL L2
ENSG00000058804 NDC1 382277 sc-eQTL 6.08e-01 0.0997 0.194 0.05 CD4_CTL L2
ENSG00000081870 HSPB11 274811 sc-eQTL 3.90e-01 0.174 0.202 0.05 CD4_CTL L2
ENSG00000116205 TCEANC2 167156 sc-eQTL 5.33e-01 0.119 0.191 0.05 CD4_CTL L2
ENSG00000116209 TMEM59 167236 sc-eQTL 9.65e-02 -0.289 0.173 0.05 CD4_CTL L2
ENSG00000116212 LRRC42 274655 sc-eQTL 2.40e-02 0.433 0.191 0.05 CD4_CTL L2
ENSG00000116221 MRPL37 36699 sc-eQTL 8.03e-03 -0.563 0.21 0.05 CD4_CTL L2
ENSG00000157193 LRP8 892271 sc-eQTL 6.39e-01 -0.0932 0.199 0.05 CD4_CTL L2
ENSG00000157216 SSBP3 -192739 sc-eQTL 9.12e-01 0.0146 0.132 0.05 CD4_CTL L2
ENSG00000162385 MAGOH 982222 sc-eQTL 8.72e-01 -0.0307 0.19 0.05 CD4_CTL L2
ENSG00000162402 USP24 -994624 sc-eQTL 6.59e-01 0.08 0.181 0.05 CD4_CTL L2
ENSG00000243725 TTC4 -495121 sc-eQTL 6.66e-01 -0.0875 0.202 0.05 CD4_CTL L2
ENSG00000006555 TTC22 -580583 sc-eQTL 8.42e-01 0.038 0.191 0.051 CD8_TCM L2
ENSG00000058799 YIPF1 330942 sc-eQTL 1.35e-01 0.305 0.203 0.051 CD8_TCM L2
ENSG00000058804 NDC1 382277 sc-eQTL 2.37e-01 -0.225 0.189 0.051 CD8_TCM L2
ENSG00000081870 HSPB11 274811 sc-eQTL 6.10e-01 -0.0898 0.176 0.051 CD8_TCM L2
ENSG00000116205 TCEANC2 167156 sc-eQTL 5.95e-01 -0.102 0.192 0.051 CD8_TCM L2
ENSG00000116209 TMEM59 167236 sc-eQTL 1.46e-01 0.245 0.168 0.051 CD8_TCM L2
ENSG00000116212 LRRC42 274655 sc-eQTL 2.86e-01 -0.214 0.2 0.051 CD8_TCM L2
ENSG00000116221 MRPL37 36699 sc-eQTL 6.15e-01 0.0967 0.192 0.051 CD8_TCM L2
ENSG00000157193 LRP8 892271 sc-eQTL 5.17e-01 -0.115 0.178 0.051 CD8_TCM L2
ENSG00000157216 SSBP3 -192739 sc-eQTL 2.63e-02 0.368 0.164 0.051 CD8_TCM L2
ENSG00000162385 MAGOH 982222 sc-eQTL 6.32e-01 -0.0862 0.18 0.051 CD8_TCM L2
ENSG00000162402 USP24 -994624 sc-eQTL 9.20e-01 -0.0162 0.161 0.051 CD8_TCM L2
ENSG00000243725 TTC4 -495121 sc-eQTL 1.94e-01 0.254 0.195 0.051 CD8_TCM L2
ENSG00000006555 TTC22 -580583 sc-eQTL 2.45e-01 0.211 0.181 0.05 CD8_TEM L2
ENSG00000058799 YIPF1 330942 sc-eQTL 2.25e-01 -0.236 0.194 0.05 CD8_TEM L2
ENSG00000058804 NDC1 382277 sc-eQTL 6.35e-01 0.0879 0.185 0.05 CD8_TEM L2
ENSG00000081870 HSPB11 274811 sc-eQTL 8.66e-01 0.0298 0.175 0.05 CD8_TEM L2
ENSG00000116205 TCEANC2 167156 sc-eQTL 8.91e-01 -0.0261 0.189 0.05 CD8_TEM L2
ENSG00000116209 TMEM59 167236 sc-eQTL 3.96e-01 0.156 0.183 0.05 CD8_TEM L2
ENSG00000116212 LRRC42 274655 sc-eQTL 5.92e-01 -0.106 0.197 0.05 CD8_TEM L2
ENSG00000116221 MRPL37 36699 sc-eQTL 7.47e-01 -0.0601 0.186 0.05 CD8_TEM L2
ENSG00000157193 LRP8 892271 sc-eQTL 7.09e-01 -0.0691 0.185 0.05 CD8_TEM L2
ENSG00000157216 SSBP3 -192739 sc-eQTL 6.37e-01 -0.0829 0.176 0.05 CD8_TEM L2
ENSG00000162385 MAGOH 982222 sc-eQTL 5.22e-01 0.107 0.167 0.05 CD8_TEM L2
ENSG00000162402 USP24 -994624 sc-eQTL 7.15e-01 -0.0678 0.185 0.05 CD8_TEM L2
ENSG00000243725 TTC4 -495121 sc-eQTL 9.58e-01 -0.00997 0.188 0.05 CD8_TEM L2
ENSG00000006555 TTC22 -580583 sc-eQTL 2.28e-01 -0.232 0.192 0.056 PB L2
ENSG00000058799 YIPF1 330942 sc-eQTL 9.19e-01 -0.0138 0.136 0.056 PB L2
ENSG00000058804 NDC1 382277 sc-eQTL 2.60e-01 -0.227 0.201 0.056 PB L2
ENSG00000081870 HSPB11 274811 sc-eQTL 7.69e-01 0.0502 0.17 0.056 PB L2
ENSG00000116133 DHCR24 -666455 sc-eQTL 2.23e-01 0.209 0.17 0.056 PB L2
ENSG00000116205 TCEANC2 167156 sc-eQTL 1.41e-01 0.306 0.206 0.056 PB L2
ENSG00000116209 TMEM59 167236 sc-eQTL 3.60e-01 -0.0797 0.0868 0.056 PB L2
ENSG00000116212 LRRC42 274655 sc-eQTL 3.78e-03 0.56 0.189 0.056 PB L2
ENSG00000116221 MRPL37 36699 sc-eQTL 6.92e-03 -0.422 0.153 0.056 PB L2
ENSG00000157193 LRP8 892271 sc-eQTL 4.51e-01 0.15 0.199 0.056 PB L2
ENSG00000157216 SSBP3 -192739 sc-eQTL 9.09e-01 -0.021 0.183 0.056 PB L2
ENSG00000162385 MAGOH 982222 sc-eQTL 1.96e-01 0.248 0.191 0.056 PB L2
ENSG00000162402 USP24 -994624 sc-eQTL 1.65e-01 -0.288 0.206 0.056 PB L2
ENSG00000215883 CYB5RL 20704 sc-eQTL 9.12e-01 -0.0237 0.215 0.056 PB L2
ENSG00000230138 LINC02812 852495 sc-eQTL 8.63e-01 -0.0267 0.155 0.056 PB L2
ENSG00000243725 TTC4 -495121 sc-eQTL 4.01e-01 -0.169 0.2 0.056 PB L2
ENSG00000006555 TTC22 -580583 sc-eQTL 3.91e-01 -0.147 0.171 0.05 Pro_T L2
ENSG00000058799 YIPF1 330942 sc-eQTL 3.99e-01 0.137 0.162 0.05 Pro_T L2
ENSG00000058804 NDC1 382277 sc-eQTL 1.72e-01 -0.175 0.128 0.05 Pro_T L2
ENSG00000081870 HSPB11 274811 sc-eQTL 3.91e-01 -0.0991 0.115 0.05 Pro_T L2
ENSG00000116133 DHCR24 -666455 sc-eQTL 4.46e-01 0.111 0.145 0.05 Pro_T L2
ENSG00000116205 TCEANC2 167156 sc-eQTL 2.57e-01 0.201 0.177 0.05 Pro_T L2
ENSG00000116209 TMEM59 167236 sc-eQTL 9.91e-01 0.00144 0.123 0.05 Pro_T L2
ENSG00000116212 LRRC42 274655 sc-eQTL 3.47e-01 -0.149 0.158 0.05 Pro_T L2
ENSG00000116221 MRPL37 36699 sc-eQTL 8.91e-02 -0.205 0.12 0.05 Pro_T L2
ENSG00000157193 LRP8 892271 sc-eQTL 3.02e-01 0.171 0.165 0.05 Pro_T L2
ENSG00000157216 SSBP3 -192739 sc-eQTL 8.96e-01 -0.0177 0.135 0.05 Pro_T L2
ENSG00000162385 MAGOH 982222 sc-eQTL 4.23e-02 -0.306 0.15 0.05 Pro_T L2
ENSG00000162402 USP24 -994624 sc-eQTL 3.22e-01 0.164 0.165 0.05 Pro_T L2
ENSG00000215883 CYB5RL 20704 sc-eQTL 2.96e-01 0.17 0.163 0.05 Pro_T L2
ENSG00000243725 TTC4 -495121 sc-eQTL 8.72e-01 0.0292 0.181 0.05 Pro_T L2
ENSG00000058799 YIPF1 330942 sc-eQTL 4.06e-01 -0.156 0.188 0.051 cDC L2
ENSG00000058804 NDC1 382277 sc-eQTL 3.89e-01 0.164 0.19 0.051 cDC L2
ENSG00000081870 HSPB11 274811 sc-eQTL 9.73e-01 -0.00685 0.201 0.051 cDC L2
ENSG00000116133 DHCR24 -666455 sc-eQTL 6.50e-01 -0.0708 0.156 0.051 cDC L2
ENSG00000116205 TCEANC2 167156 sc-eQTL 3.47e-01 -0.173 0.183 0.051 cDC L2
ENSG00000116209 TMEM59 167236 sc-eQTL 7.19e-01 -0.0563 0.156 0.051 cDC L2
ENSG00000116212 LRRC42 274655 sc-eQTL 9.02e-01 -0.0234 0.191 0.051 cDC L2
ENSG00000116221 MRPL37 36699 sc-eQTL 9.78e-01 -0.00558 0.2 0.051 cDC L2
ENSG00000157193 LRP8 892271 sc-eQTL 2.59e-01 -0.224 0.198 0.051 cDC L2
ENSG00000157216 SSBP3 -192739 sc-eQTL 5.42e-01 0.112 0.184 0.051 cDC L2
ENSG00000162385 MAGOH 982222 sc-eQTL 5.12e-01 0.109 0.166 0.051 cDC L2
ENSG00000162390 ACOT11 -321517 sc-eQTL 1.37e-01 0.254 0.17 0.051 cDC L2
ENSG00000162402 USP24 -994624 sc-eQTL 3.69e-01 0.173 0.192 0.051 cDC L2
ENSG00000215883 CYB5RL 20704 sc-eQTL 1.92e-01 -0.215 0.164 0.051 cDC L2
ENSG00000230138 LINC02812 852495 sc-eQTL 3.63e-01 -0.155 0.17 0.051 cDC L2
ENSG00000243725 TTC4 -495121 sc-eQTL 2.16e-02 -0.45 0.194 0.051 cDC L2
ENSG00000058799 YIPF1 330942 sc-eQTL 3.52e-01 -0.18 0.193 0.052 ncMono L2
ENSG00000058804 NDC1 382277 sc-eQTL 7.49e-01 -0.0613 0.191 0.052 ncMono L2
ENSG00000081870 HSPB11 274811 sc-eQTL 7.72e-01 0.0589 0.203 0.052 ncMono L2
ENSG00000116133 DHCR24 -666455 sc-eQTL 4.39e-01 0.113 0.146 0.052 ncMono L2
ENSG00000116205 TCEANC2 167156 sc-eQTL 5.51e-01 0.109 0.182 0.052 ncMono L2
ENSG00000116209 TMEM59 167236 sc-eQTL 3.60e-01 0.134 0.146 0.052 ncMono L2
ENSG00000116212 LRRC42 274655 sc-eQTL 8.26e-01 0.0438 0.199 0.052 ncMono L2
ENSG00000116221 MRPL37 36699 sc-eQTL 8.28e-01 -0.0409 0.188 0.052 ncMono L2
ENSG00000157193 LRP8 892271 sc-eQTL 7.70e-01 0.0602 0.205 0.052 ncMono L2
ENSG00000157216 SSBP3 -192739 sc-eQTL 9.99e-02 -0.338 0.204 0.052 ncMono L2
ENSG00000162385 MAGOH 982222 sc-eQTL 5.99e-01 -0.0902 0.172 0.052 ncMono L2
ENSG00000162402 USP24 -994624 sc-eQTL 2.40e-01 0.193 0.164 0.052 ncMono L2
ENSG00000243725 TTC4 -495121 sc-eQTL 8.92e-01 0.0264 0.195 0.052 ncMono L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000116221 MRPL37 36699 eQTL 6.02e-08 -0.128 0.0234 0.0 0.0 0.0751
ENSG00000157193 LRP8 892670 eQTL 0.0188 0.0901 0.0383 0.0 0.0 0.0751
ENSG00000157216 SSBP3 -192739 eQTL 1.22e-07 -0.133 0.0249 0.0261 0.0242 0.0751
ENSG00000162390 ACOT11 -321517 eQTL 0.0421 0.0859 0.0422 0.0 0.0 0.0751
ENSG00000285954 AC119428.3 876709 eQTL 0.00822 -0.172 0.0648 0.00276 0.0 0.0751

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000116133 \N -666455 3.27e-07 1.7e-07 4.47e-08 2.57e-07 9.16e-08 8.89e-08 1.81e-07 5.4e-08 1.45e-07 4.94e-08 1.59e-07 1.08e-07 2.24e-07 8.44e-08 6.25e-08 7.49e-08 4.09e-08 1.4e-07 5.75e-08 5.07e-08 1.08e-07 1.26e-07 1.45e-07 2.93e-08 1.72e-07 1.14e-07 1.17e-07 1.06e-07 1.2e-07 1.07e-07 1.08e-07 3.68e-08 4.02e-08 9.72e-08 4.04e-08 3.65e-08 5.8e-08 9.26e-08 6.41e-08 5.13e-08 5.3e-08 2.19e-07 5.27e-08 7.2e-09 5.15e-08 1.8e-08 1.19e-07 4.04e-09 4.77e-08
ENSG00000116221 MRPL37 36699 3.54e-05 2.26e-05 2.59e-06 1.24e-05 2.6e-06 9.8e-06 2.42e-05 3.01e-06 1.73e-05 8.28e-06 2.08e-05 8.35e-06 3.03e-05 7.98e-06 5.23e-06 1.03e-05 1.01e-05 1.88e-05 4.09e-06 4.22e-06 7.96e-06 1.81e-05 1.8e-05 4.81e-06 3e-05 5.33e-06 8.02e-06 7.23e-06 1.75e-05 1.49e-05 1.12e-05 1.12e-06 1.43e-06 4.31e-06 7.21e-06 2.78e-06 1.78e-06 2.02e-06 3.25e-06 1.96e-06 9.45e-07 2.65e-05 2.79e-06 1.32e-07 1.17e-06 2.35e-06 2.74e-06 7.75e-07 4.43e-07
ENSG00000157216 SSBP3 -192739 4.9e-06 4.89e-06 2.54e-07 3.05e-06 4.85e-07 1.19e-06 2.49e-06 5.79e-07 2.35e-06 9.12e-07 3.41e-06 1.66e-06 5.44e-06 2.33e-06 9.24e-07 1.62e-06 1.61e-06 2.03e-06 5.54e-07 1.22e-06 7.02e-07 3.17e-06 2.51e-06 1e-06 4.72e-06 1.19e-06 1.63e-06 1.84e-06 2.18e-06 1.85e-06 2e-06 3.42e-07 4e-07 1.35e-06 1.68e-06 5.32e-07 7.33e-07 3.15e-07 1.11e-06 3.75e-07 2.72e-07 5.65e-06 4.47e-07 2.07e-07 2.81e-07 3.27e-07 3.93e-07 7.69e-08 1.05e-07
ENSG00000184313 \N -421014 1.25e-06 8.9e-07 7.97e-08 6.49e-07 9.93e-08 3.26e-07 5.8e-07 7.98e-08 4.43e-07 1.78e-07 9.47e-07 3.62e-07 1.05e-06 2.4e-07 2.35e-07 2.05e-07 2.48e-07 4.11e-07 1.5e-07 1.97e-07 1.52e-07 3.8e-07 3.08e-07 1.25e-07 1.13e-06 2.01e-07 3.93e-07 2.83e-07 2.98e-07 3.8e-07 3.43e-07 4.1e-08 5.51e-08 2.72e-07 3.69e-07 5.41e-08 1.11e-07 6.46e-08 7.72e-08 2.17e-08 8.02e-08 1.43e-06 7.3e-08 1.24e-08 7.26e-08 1.44e-08 9.25e-08 2.07e-09 4.8e-08
ENSG00000198711 \N -15700 4.85e-05 2.91e-05 5.05e-06 1.48e-05 5.01e-06 1.51e-05 3.97e-05 3.9e-06 2.6e-05 1.36e-05 3.19e-05 1.44e-05 4.23e-05 1.22e-05 6.73e-06 1.64e-05 1.58e-05 2.66e-05 7.02e-06 5.81e-06 1.36e-05 2.88e-05 2.96e-05 8.13e-06 4.05e-05 7.34e-06 1.19e-05 1.11e-05 2.76e-05 2.35e-05 1.65e-05 1.62e-06 2.29e-06 6.6e-06 1.04e-05 4.56e-06 2.56e-06 2.85e-06 4.29e-06 2.93e-06 1.64e-06 3.61e-05 4.1e-06 2.64e-07 2.27e-06 3.29e-06 3.79e-06 1.5e-06 1.32e-06
ENSG00000215883 \N 20704 4.67e-05 2.76e-05 4.32e-06 1.41e-05 4.08e-06 1.41e-05 3.63e-05 3.73e-06 2.37e-05 1.2e-05 2.91e-05 1.25e-05 3.91e-05 1.12e-05 6.27e-06 1.48e-05 1.48e-05 2.44e-05 6.52e-06 5.35e-06 1.19e-05 2.62e-05 2.67e-05 7.36e-06 3.79e-05 6.6e-06 1.06e-05 9.63e-06 2.54e-05 2.14e-05 1.46e-05 1.67e-06 2.04e-06 6.01e-06 9.49e-06 4.48e-06 2.18e-06 2.79e-06 3.98e-06 2.71e-06 1.69e-06 3.42e-05 3.74e-06 2.22e-07 2.07e-06 2.96e-06 3.62e-06 1.24e-06 1.06e-06