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Genes within 1Mb (chr1:55706668:T:TA):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000006555 TTC22 905345 sc-eQTL 5.74e-01 0.0519 0.0922 0.327 B L1
ENSG00000116133 DHCR24 819473 sc-eQTL 5.98e-01 0.046 0.0872 0.327 B L1
ENSG00000162402 USP24 491304 sc-eQTL 3.01e-01 -0.0551 0.0531 0.327 B L1
ENSG00000162407 PLPP3 -938633 sc-eQTL 2.31e-01 -0.108 0.09 0.327 B L1
ENSG00000243725 TTC4 990807 sc-eQTL 1.98e-01 -0.115 0.0888 0.327 B L1
ENSG00000006555 TTC22 905345 sc-eQTL 1.17e-03 0.229 0.0696 0.327 CD4T L1
ENSG00000162402 USP24 491304 sc-eQTL 8.15e-01 -0.0119 0.0508 0.327 CD4T L1
ENSG00000243725 TTC4 990807 sc-eQTL 5.31e-01 0.048 0.0764 0.327 CD4T L1
ENSG00000006555 TTC22 905345 sc-eQTL 3.33e-01 -0.0603 0.0622 0.327 CD8T L1
ENSG00000162402 USP24 491304 sc-eQTL 9.10e-03 -0.134 0.0507 0.327 CD8T L1
ENSG00000243725 TTC4 990807 sc-eQTL 6.62e-01 0.0392 0.0894 0.327 CD8T L1
ENSG00000116133 DHCR24 819473 sc-eQTL 6.72e-02 0.159 0.0861 0.331 DC L1
ENSG00000162402 USP24 491304 sc-eQTL 7.87e-01 0.0144 0.0532 0.331 DC L1
ENSG00000243725 TTC4 990807 sc-eQTL 2.60e-01 0.117 0.103 0.331 DC L1
ENSG00000116133 DHCR24 819473 sc-eQTL 6.65e-01 0.0261 0.0601 0.327 Mono L1
ENSG00000162402 USP24 491304 sc-eQTL 8.79e-01 -0.00838 0.055 0.327 Mono L1
ENSG00000243725 TTC4 990807 sc-eQTL 9.85e-01 0.00178 0.0969 0.327 Mono L1
ENSG00000006555 TTC22 905345 sc-eQTL 2.50e-01 -0.096 0.0832 0.328 NK L1
ENSG00000116133 DHCR24 819473 sc-eQTL 1.27e-01 0.128 0.0838 0.328 NK L1
ENSG00000162398 LEXM 900605 sc-eQTL 7.10e-01 0.0294 0.0787 0.328 NK L1
ENSG00000162402 USP24 491304 sc-eQTL 1.32e-01 0.0718 0.0475 0.328 NK L1
ENSG00000243725 TTC4 990807 sc-eQTL 1.10e-01 0.144 0.0898 0.328 NK L1
ENSG00000006555 TTC22 905345 sc-eQTL 5.60e-01 0.0429 0.0736 0.327 Other_T L1
ENSG00000116133 DHCR24 819473 sc-eQTL 7.43e-01 -0.0188 0.0572 0.327 Other_T L1
ENSG00000162402 USP24 491304 sc-eQTL 1.25e-01 -0.104 0.0673 0.327 Other_T L1
ENSG00000243725 TTC4 990807 sc-eQTL 5.86e-01 0.0503 0.0921 0.327 Other_T L1
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000006555 TTC22 905345 sc-eQTL 1.71e-01 -0.107 0.0777 0.324 B_Activated L2
ENSG00000116133 DHCR24 819473 sc-eQTL 4.02e-01 0.0769 0.0916 0.324 B_Activated L2
ENSG00000162402 USP24 491304 sc-eQTL 8.96e-02 -0.169 0.0991 0.324 B_Activated L2
ENSG00000162407 PLPP3 -938633 sc-eQTL 1.16e-01 -0.157 0.0998 0.324 B_Activated L2
ENSG00000243725 TTC4 990807 sc-eQTL 3.35e-01 -0.0923 0.0954 0.324 B_Activated L2
ENSG00000006555 TTC22 905345 sc-eQTL 8.77e-01 0.0154 0.0994 0.328 B_Intermediate L2
ENSG00000116133 DHCR24 819473 sc-eQTL 2.76e-01 0.1 0.092 0.328 B_Intermediate L2
ENSG00000162402 USP24 491304 sc-eQTL 7.74e-01 -0.0209 0.0728 0.328 B_Intermediate L2
ENSG00000162407 PLPP3 -938633 sc-eQTL 2.86e-01 -0.0993 0.0928 0.328 B_Intermediate L2
ENSG00000243725 TTC4 990807 sc-eQTL 5.98e-01 -0.0494 0.0936 0.328 B_Intermediate L2
ENSG00000006555 TTC22 905345 sc-eQTL 6.53e-01 -0.0425 0.0945 0.33 B_Memory L2
ENSG00000116133 DHCR24 819473 sc-eQTL 7.52e-01 0.0297 0.0938 0.33 B_Memory L2
ENSG00000162402 USP24 491304 sc-eQTL 2.97e-01 -0.0806 0.0771 0.33 B_Memory L2
ENSG00000162407 PLPP3 -938633 sc-eQTL 8.61e-01 -0.0151 0.0862 0.33 B_Memory L2
ENSG00000243725 TTC4 990807 sc-eQTL 9.14e-02 -0.167 0.0985 0.33 B_Memory L2
ENSG00000006555 TTC22 905345 sc-eQTL 8.96e-01 -0.0129 0.0985 0.327 B_Naive1 L2
ENSG00000116133 DHCR24 819473 sc-eQTL 7.35e-01 0.0313 0.0923 0.327 B_Naive1 L2
ENSG00000162402 USP24 491304 sc-eQTL 4.94e-01 -0.0453 0.0661 0.327 B_Naive1 L2
ENSG00000162407 PLPP3 -938633 sc-eQTL 7.31e-01 -0.0315 0.0914 0.327 B_Naive1 L2
ENSG00000243725 TTC4 990807 sc-eQTL 4.96e-01 -0.0614 0.09 0.327 B_Naive1 L2
ENSG00000006555 TTC22 905345 sc-eQTL 9.34e-01 -0.00819 0.0993 0.328 B_Naive2 L2
ENSG00000116133 DHCR24 819473 sc-eQTL 7.85e-01 0.0236 0.0864 0.328 B_Naive2 L2
ENSG00000162402 USP24 491304 sc-eQTL 7.04e-01 -0.0276 0.0725 0.328 B_Naive2 L2
ENSG00000162407 PLPP3 -938633 sc-eQTL 9.08e-01 0.00989 0.0851 0.328 B_Naive2 L2
ENSG00000243725 TTC4 990807 sc-eQTL 9.49e-01 -0.00681 0.106 0.328 B_Naive2 L2
ENSG00000006555 TTC22 905345 sc-eQTL 6.69e-01 0.0402 0.0939 0.334 CD4_CTL L2
ENSG00000162402 USP24 491304 sc-eQTL 5.34e-01 -0.0568 0.0913 0.334 CD4_CTL L2
ENSG00000243725 TTC4 990807 sc-eQTL 3.79e-01 -0.0899 0.102 0.334 CD4_CTL L2
ENSG00000006555 TTC22 905345 sc-eQTL 1.52e-02 0.202 0.0826 0.327 CD4_Naive L2
ENSG00000162402 USP24 491304 sc-eQTL 7.09e-01 0.0206 0.055 0.327 CD4_Naive L2
ENSG00000243725 TTC4 990807 sc-eQTL 9.03e-01 0.0102 0.0838 0.327 CD4_Naive L2
ENSG00000006555 TTC22 905345 sc-eQTL 7.86e-02 0.154 0.0873 0.327 CD4_TCM L2
ENSG00000162402 USP24 491304 sc-eQTL 9.98e-02 -0.108 0.0655 0.327 CD4_TCM L2
ENSG00000243725 TTC4 990807 sc-eQTL 1.50e-01 0.137 0.0945 0.327 CD4_TCM L2
ENSG00000006555 TTC22 905345 sc-eQTL 5.39e-02 0.196 0.101 0.327 CD4_TEM L2
ENSG00000162402 USP24 491304 sc-eQTL 3.64e-01 0.0682 0.075 0.327 CD4_TEM L2
ENSG00000243725 TTC4 990807 sc-eQTL 5.73e-01 0.056 0.0993 0.327 CD4_TEM L2
ENSG00000006555 TTC22 905345 sc-eQTL 1.72e-01 -0.112 0.0814 0.327 CD8_CTL L2
ENSG00000162402 USP24 491304 sc-eQTL 1.62e-01 -0.0887 0.0632 0.327 CD8_CTL L2
ENSG00000243725 TTC4 990807 sc-eQTL 8.21e-01 0.0215 0.0949 0.327 CD8_CTL L2
ENSG00000006555 TTC22 905345 sc-eQTL 9.22e-01 0.00899 0.0916 0.327 CD8_Naive L2
ENSG00000162402 USP24 491304 sc-eQTL 1.28e-03 -0.213 0.0653 0.327 CD8_Naive L2
ENSG00000243725 TTC4 990807 sc-eQTL 5.86e-01 0.0534 0.0979 0.327 CD8_Naive L2
ENSG00000006555 TTC22 905345 sc-eQTL 5.24e-01 0.0635 0.0994 0.336 CD8_TCM L2
ENSG00000162402 USP24 491304 sc-eQTL 6.37e-01 0.0397 0.084 0.336 CD8_TCM L2
ENSG00000243725 TTC4 990807 sc-eQTL 8.38e-01 -0.0209 0.102 0.336 CD8_TCM L2
ENSG00000006555 TTC22 905345 sc-eQTL 5.06e-02 -0.193 0.0979 0.336 CD8_TEM L2
ENSG00000162402 USP24 491304 sc-eQTL 1.54e-02 -0.243 0.0993 0.336 CD8_TEM L2
ENSG00000243725 TTC4 990807 sc-eQTL 7.30e-01 -0.0353 0.102 0.336 CD8_TEM L2
ENSG00000006555 TTC22 905345 sc-eQTL 3.29e-01 0.0884 0.0903 0.329 MAIT L2
ENSG00000116133 DHCR24 819473 sc-eQTL 2.27e-01 -0.0809 0.0668 0.329 MAIT L2
ENSG00000162402 USP24 491304 sc-eQTL 8.43e-03 -0.213 0.0802 0.329 MAIT L2
ENSG00000243725 TTC4 990807 sc-eQTL 8.86e-01 0.0135 0.0942 0.329 MAIT L2
ENSG00000006555 TTC22 905345 sc-eQTL 4.40e-02 -0.203 0.1 0.329 NK_CD56bright L2
ENSG00000116133 DHCR24 819473 sc-eQTL 3.39e-01 0.0855 0.0893 0.329 NK_CD56bright L2
ENSG00000162398 LEXM 900605 sc-eQTL 7.34e-01 0.0312 0.0916 0.329 NK_CD56bright L2
ENSG00000162402 USP24 491304 sc-eQTL 7.48e-01 0.0254 0.0789 0.329 NK_CD56bright L2
ENSG00000243725 TTC4 990807 sc-eQTL 7.03e-01 -0.038 0.0995 0.329 NK_CD56bright L2
ENSG00000006555 TTC22 905345 sc-eQTL 7.91e-01 0.0223 0.084 0.328 NK_CD56dim L2
ENSG00000116133 DHCR24 819473 sc-eQTL 1.02e-01 0.143 0.0871 0.328 NK_CD56dim L2
ENSG00000162398 LEXM 900605 sc-eQTL 5.16e-01 0.056 0.0861 0.328 NK_CD56dim L2
ENSG00000162402 USP24 491304 sc-eQTL 6.32e-01 0.0262 0.0547 0.328 NK_CD56dim L2
ENSG00000243725 TTC4 990807 sc-eQTL 4.27e-01 0.0745 0.0936 0.328 NK_CD56dim L2
ENSG00000006555 TTC22 905345 sc-eQTL 2.67e-01 -0.113 0.101 0.324 NK_HLA L2
ENSG00000116133 DHCR24 819473 sc-eQTL 3.50e-01 0.0926 0.0989 0.324 NK_HLA L2
ENSG00000162398 LEXM 900605 sc-eQTL 5.05e-01 0.0642 0.0962 0.324 NK_HLA L2
ENSG00000162402 USP24 491304 sc-eQTL 7.52e-01 -0.0223 0.0706 0.324 NK_HLA L2
ENSG00000243725 TTC4 990807 sc-eQTL 5.99e-01 0.0555 0.105 0.324 NK_HLA L2
ENSG00000006555 TTC22 905345 sc-eQTL 4.39e-01 -0.0694 0.0896 0.328 NK_cytokine L2
ENSG00000116133 DHCR24 819473 sc-eQTL 3.84e-01 0.079 0.0906 0.328 NK_cytokine L2
ENSG00000162398 LEXM 900605 sc-eQTL 6.63e-01 -0.0412 0.0946 0.328 NK_cytokine L2
ENSG00000162402 USP24 491304 sc-eQTL 1.75e-01 0.0873 0.0642 0.328 NK_cytokine L2
ENSG00000243725 TTC4 990807 sc-eQTL 6.31e-02 0.177 0.0948 0.328 NK_cytokine L2
ENSG00000006555 TTC22 905345 sc-eQTL 6.18e-01 0.0547 0.109 0.311 PB L2
ENSG00000116133 DHCR24 819473 sc-eQTL 3.30e-01 -0.0945 0.0967 0.311 PB L2
ENSG00000162402 USP24 491304 sc-eQTL 1.23e-01 -0.181 0.116 0.311 PB L2
ENSG00000162407 PLPP3 -938633 sc-eQTL 9.81e-01 0.0026 0.106 0.311 PB L2
ENSG00000243725 TTC4 990807 sc-eQTL 7.04e-01 0.0434 0.114 0.311 PB L2
ENSG00000006555 TTC22 905345 sc-eQTL 2.21e-01 0.111 0.0903 0.333 Pro_T L2
ENSG00000116133 DHCR24 819473 sc-eQTL 6.86e-01 -0.0312 0.077 0.333 Pro_T L2
ENSG00000162402 USP24 491304 sc-eQTL 9.49e-01 0.00556 0.0874 0.333 Pro_T L2
ENSG00000243725 TTC4 990807 sc-eQTL 2.71e-01 0.106 0.0957 0.333 Pro_T L2
ENSG00000006555 TTC22 905345 sc-eQTL 5.08e-01 -0.0594 0.0897 0.327 Treg L2
ENSG00000162402 USP24 491304 sc-eQTL 3.40e-01 0.0762 0.0798 0.327 Treg L2
ENSG00000243725 TTC4 990807 sc-eQTL 3.83e-01 -0.088 0.101 0.327 Treg L2
ENSG00000116133 DHCR24 819473 sc-eQTL 4.50e-01 0.0637 0.084 0.329 cDC L2
ENSG00000162402 USP24 491304 sc-eQTL 4.62e-01 -0.0763 0.104 0.329 cDC L2
ENSG00000243725 TTC4 990807 sc-eQTL 2.16e-01 0.132 0.106 0.329 cDC L2
ENSG00000116133 DHCR24 819473 sc-eQTL 5.86e-01 0.032 0.0587 0.327 cMono_IL1B L2
ENSG00000162402 USP24 491304 sc-eQTL 9.20e-01 0.00671 0.0665 0.327 cMono_IL1B L2
ENSG00000243725 TTC4 990807 sc-eQTL 9.31e-01 -0.00878 0.102 0.327 cMono_IL1B L2
ENSG00000116133 DHCR24 819473 sc-eQTL 9.03e-01 -0.0068 0.0555 0.327 cMono_S100A L2
ENSG00000162402 USP24 491304 sc-eQTL 6.22e-01 -0.0406 0.0822 0.327 cMono_S100A L2
ENSG00000243725 TTC4 990807 sc-eQTL 2.30e-01 -0.124 0.103 0.327 cMono_S100A L2
ENSG00000006555 TTC22 905345 sc-eQTL 5.60e-01 0.0539 0.0921 0.364 gdT L2
ENSG00000116133 DHCR24 819473 sc-eQTL 7.92e-01 -0.0271 0.103 0.364 gdT L2
ENSG00000162402 USP24 491304 sc-eQTL 5.65e-01 0.0569 0.0987 0.364 gdT L2
ENSG00000243725 TTC4 990807 sc-eQTL 9.79e-01 -0.003 0.116 0.364 gdT L2
ENSG00000116133 DHCR24 819473 sc-eQTL 4.68e-01 -0.0543 0.0746 0.329 intMono L2
ENSG00000162402 USP24 491304 sc-eQTL 5.68e-01 0.0543 0.0951 0.329 intMono L2
ENSG00000243725 TTC4 990807 sc-eQTL 2.50e-01 0.116 0.101 0.329 intMono L2
ENSG00000116133 DHCR24 819473 sc-eQTL 4.12e-02 -0.152 0.0737 0.333 ncMono L2
ENSG00000162402 USP24 491304 sc-eQTL 7.61e-01 -0.0256 0.084 0.333 ncMono L2
ENSG00000243725 TTC4 990807 sc-eQTL 4.50e-01 0.0751 0.0993 0.333 ncMono L2
ENSG00000116133 DHCR24 819473 sc-eQTL 7.47e-04 0.309 0.0899 0.35 pDC L2
ENSG00000162402 USP24 491304 sc-eQTL 2.24e-01 0.0909 0.0745 0.35 pDC L2
ENSG00000243725 TTC4 990807 sc-eQTL 2.44e-01 0.138 0.118 0.35 pDC L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000006555 TTC22 905345 sc-eQTL 9.09e-01 -0.0108 0.0943 0.327 B_Memory LOneK1K
ENSG00000116133 DHCR24 819473 sc-eQTL 3.03e-01 0.0974 0.0944 0.327 B_Memory LOneK1K
ENSG00000162402 USP24 491304 sc-eQTL 6.10e-01 -0.0345 0.0675 0.327 B_Memory LOneK1K
ENSG00000162407 PLPP3 -938633 sc-eQTL 3.89e-01 -0.0725 0.084 0.327 B_Memory LOneK1K
ENSG00000243725 TTC4 990807 sc-eQTL 3.55e-02 -0.195 0.0923 0.327 B_Memory LOneK1K
ENSG00000006555 TTC22 905345 sc-eQTL 6.94e-01 0.0393 0.0997 0.327 B_Naive LOneK1K
ENSG00000116133 DHCR24 819473 sc-eQTL 8.19e-01 0.0206 0.0898 0.327 B_Naive LOneK1K
ENSG00000162402 USP24 491304 sc-eQTL 4.11e-01 -0.0523 0.0635 0.327 B_Naive LOneK1K
ENSG00000162407 PLPP3 -938633 sc-eQTL 6.30e-01 -0.0478 0.0992 0.327 B_Naive LOneK1K
ENSG00000243725 TTC4 990807 sc-eQTL 7.17e-01 -0.0343 0.0947 0.327 B_Naive LOneK1K
ENSG00000116133 DHCR24 819473 sc-eQTL 5.56e-01 0.0336 0.057 0.327 CD14_Mono LOneK1K
ENSG00000162402 USP24 491304 sc-eQTL 8.25e-01 -0.0138 0.0623 0.327 CD14_Mono LOneK1K
ENSG00000243725 TTC4 990807 sc-eQTL 5.94e-01 -0.0552 0.103 0.327 CD14_Mono LOneK1K
ENSG00000116133 DHCR24 819473 sc-eQTL 1.82e-01 -0.0924 0.069 0.325 CD16_Mono LOneK1K
ENSG00000162402 USP24 491304 sc-eQTL 5.56e-01 -0.046 0.078 0.325 CD16_Mono LOneK1K
ENSG00000243725 TTC4 990807 sc-eQTL 3.03e-01 0.101 0.0976 0.325 CD16_Mono LOneK1K
ENSG00000006555 TTC22 905345 sc-eQTL 4.25e-01 -0.0653 0.0818 0.328 NK_CD56dim LOneK1K
ENSG00000116133 DHCR24 819473 sc-eQTL 1.68e-01 0.118 0.0852 0.328 NK_CD56dim LOneK1K
ENSG00000162398 LEXM 900605 sc-eQTL 7.37e-01 0.0271 0.0804 0.328 NK_CD56dim LOneK1K
ENSG00000162402 USP24 491304 sc-eQTL 2.31e-01 0.061 0.0508 0.328 NK_CD56dim LOneK1K
ENSG00000243725 TTC4 990807 sc-eQTL 5.02e-02 0.177 0.0899 0.328 NK_CD56dim LOneK1K

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000234810 AL603840.1 377380 eQTL 1.56e-06 0.151 0.0311 0.0 0.0 0.316

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina