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Genes within 1Mb (chr1:55696320:A:T):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000006555 TTC22 894997 sc-eQTL 5.74e-01 0.0519 0.0922 0.327 B L1
ENSG00000116133 DHCR24 809125 sc-eQTL 5.98e-01 0.046 0.0872 0.327 B L1
ENSG00000162402 USP24 480956 sc-eQTL 3.01e-01 -0.0551 0.0531 0.327 B L1
ENSG00000162407 PLPP3 -948981 sc-eQTL 2.31e-01 -0.108 0.09 0.327 B L1
ENSG00000243725 TTC4 980459 sc-eQTL 1.98e-01 -0.115 0.0888 0.327 B L1
ENSG00000006555 TTC22 894997 sc-eQTL 1.17e-03 0.229 0.0696 0.327 CD4T L1
ENSG00000162402 USP24 480956 sc-eQTL 8.15e-01 -0.0119 0.0508 0.327 CD4T L1
ENSG00000243725 TTC4 980459 sc-eQTL 5.31e-01 0.048 0.0764 0.327 CD4T L1
ENSG00000006555 TTC22 894997 sc-eQTL 3.33e-01 -0.0603 0.0622 0.327 CD8T L1
ENSG00000162402 USP24 480956 sc-eQTL 9.10e-03 -0.134 0.0507 0.327 CD8T L1
ENSG00000243725 TTC4 980459 sc-eQTL 6.62e-01 0.0392 0.0894 0.327 CD8T L1
ENSG00000116133 DHCR24 809125 sc-eQTL 6.72e-02 0.159 0.0861 0.331 DC L1
ENSG00000162402 USP24 480956 sc-eQTL 7.87e-01 0.0144 0.0532 0.331 DC L1
ENSG00000243725 TTC4 980459 sc-eQTL 2.60e-01 0.117 0.103 0.331 DC L1
ENSG00000116133 DHCR24 809125 sc-eQTL 6.65e-01 0.0261 0.0601 0.327 Mono L1
ENSG00000162402 USP24 480956 sc-eQTL 8.79e-01 -0.00838 0.055 0.327 Mono L1
ENSG00000243725 TTC4 980459 sc-eQTL 9.85e-01 0.00178 0.0969 0.327 Mono L1
ENSG00000006555 TTC22 894997 sc-eQTL 2.50e-01 -0.096 0.0832 0.328 NK L1
ENSG00000116133 DHCR24 809125 sc-eQTL 1.27e-01 0.128 0.0838 0.328 NK L1
ENSG00000162398 LEXM 890257 sc-eQTL 7.10e-01 0.0294 0.0787 0.328 NK L1
ENSG00000162402 USP24 480956 sc-eQTL 1.32e-01 0.0718 0.0475 0.328 NK L1
ENSG00000243725 TTC4 980459 sc-eQTL 1.10e-01 0.144 0.0898 0.328 NK L1
ENSG00000006555 TTC22 894997 sc-eQTL 5.60e-01 0.0429 0.0736 0.327 Other_T L1
ENSG00000116133 DHCR24 809125 sc-eQTL 7.43e-01 -0.0188 0.0572 0.327 Other_T L1
ENSG00000162402 USP24 480956 sc-eQTL 1.25e-01 -0.104 0.0673 0.327 Other_T L1
ENSG00000243725 TTC4 980459 sc-eQTL 5.86e-01 0.0503 0.0921 0.327 Other_T L1
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000006555 TTC22 894997 sc-eQTL 1.71e-01 -0.107 0.0777 0.324 B_Activated L2
ENSG00000116133 DHCR24 809125 sc-eQTL 4.02e-01 0.0769 0.0916 0.324 B_Activated L2
ENSG00000162402 USP24 480956 sc-eQTL 8.96e-02 -0.169 0.0991 0.324 B_Activated L2
ENSG00000162407 PLPP3 -948981 sc-eQTL 1.16e-01 -0.157 0.0998 0.324 B_Activated L2
ENSG00000243725 TTC4 980459 sc-eQTL 3.35e-01 -0.0923 0.0954 0.324 B_Activated L2
ENSG00000006555 TTC22 894997 sc-eQTL 8.77e-01 0.0154 0.0994 0.328 B_Intermediate L2
ENSG00000116133 DHCR24 809125 sc-eQTL 2.76e-01 0.1 0.092 0.328 B_Intermediate L2
ENSG00000162402 USP24 480956 sc-eQTL 7.74e-01 -0.0209 0.0728 0.328 B_Intermediate L2
ENSG00000162407 PLPP3 -948981 sc-eQTL 2.86e-01 -0.0993 0.0928 0.328 B_Intermediate L2
ENSG00000243725 TTC4 980459 sc-eQTL 5.98e-01 -0.0494 0.0936 0.328 B_Intermediate L2
ENSG00000006555 TTC22 894997 sc-eQTL 6.53e-01 -0.0425 0.0945 0.33 B_Memory L2
ENSG00000116133 DHCR24 809125 sc-eQTL 7.52e-01 0.0297 0.0938 0.33 B_Memory L2
ENSG00000162402 USP24 480956 sc-eQTL 2.97e-01 -0.0806 0.0771 0.33 B_Memory L2
ENSG00000162407 PLPP3 -948981 sc-eQTL 8.61e-01 -0.0151 0.0862 0.33 B_Memory L2
ENSG00000243725 TTC4 980459 sc-eQTL 9.14e-02 -0.167 0.0985 0.33 B_Memory L2
ENSG00000006555 TTC22 894997 sc-eQTL 8.96e-01 -0.0129 0.0985 0.327 B_Naive1 L2
ENSG00000116133 DHCR24 809125 sc-eQTL 7.35e-01 0.0313 0.0923 0.327 B_Naive1 L2
ENSG00000162402 USP24 480956 sc-eQTL 4.94e-01 -0.0453 0.0661 0.327 B_Naive1 L2
ENSG00000162407 PLPP3 -948981 sc-eQTL 7.31e-01 -0.0315 0.0914 0.327 B_Naive1 L2
ENSG00000243725 TTC4 980459 sc-eQTL 4.96e-01 -0.0614 0.09 0.327 B_Naive1 L2
ENSG00000006555 TTC22 894997 sc-eQTL 9.34e-01 -0.00819 0.0993 0.328 B_Naive2 L2
ENSG00000116133 DHCR24 809125 sc-eQTL 7.85e-01 0.0236 0.0864 0.328 B_Naive2 L2
ENSG00000162402 USP24 480956 sc-eQTL 7.04e-01 -0.0276 0.0725 0.328 B_Naive2 L2
ENSG00000162407 PLPP3 -948981 sc-eQTL 9.08e-01 0.00989 0.0851 0.328 B_Naive2 L2
ENSG00000243725 TTC4 980459 sc-eQTL 9.49e-01 -0.00681 0.106 0.328 B_Naive2 L2
ENSG00000006555 TTC22 894997 sc-eQTL 6.69e-01 0.0402 0.0939 0.334 CD4_CTL L2
ENSG00000162402 USP24 480956 sc-eQTL 5.34e-01 -0.0568 0.0913 0.334 CD4_CTL L2
ENSG00000243725 TTC4 980459 sc-eQTL 3.79e-01 -0.0899 0.102 0.334 CD4_CTL L2
ENSG00000006555 TTC22 894997 sc-eQTL 1.52e-02 0.202 0.0826 0.327 CD4_Naive L2
ENSG00000162402 USP24 480956 sc-eQTL 7.09e-01 0.0206 0.055 0.327 CD4_Naive L2
ENSG00000243725 TTC4 980459 sc-eQTL 9.03e-01 0.0102 0.0838 0.327 CD4_Naive L2
ENSG00000006555 TTC22 894997 sc-eQTL 7.86e-02 0.154 0.0873 0.327 CD4_TCM L2
ENSG00000162402 USP24 480956 sc-eQTL 9.98e-02 -0.108 0.0655 0.327 CD4_TCM L2
ENSG00000243725 TTC4 980459 sc-eQTL 1.50e-01 0.137 0.0945 0.327 CD4_TCM L2
ENSG00000006555 TTC22 894997 sc-eQTL 5.39e-02 0.196 0.101 0.327 CD4_TEM L2
ENSG00000162402 USP24 480956 sc-eQTL 3.64e-01 0.0682 0.075 0.327 CD4_TEM L2
ENSG00000243725 TTC4 980459 sc-eQTL 5.73e-01 0.056 0.0993 0.327 CD4_TEM L2
ENSG00000006555 TTC22 894997 sc-eQTL 1.72e-01 -0.112 0.0814 0.327 CD8_CTL L2
ENSG00000162402 USP24 480956 sc-eQTL 1.62e-01 -0.0887 0.0632 0.327 CD8_CTL L2
ENSG00000243725 TTC4 980459 sc-eQTL 8.21e-01 0.0215 0.0949 0.327 CD8_CTL L2
ENSG00000006555 TTC22 894997 sc-eQTL 9.22e-01 0.00899 0.0916 0.327 CD8_Naive L2
ENSG00000162402 USP24 480956 sc-eQTL 1.28e-03 -0.213 0.0653 0.327 CD8_Naive L2
ENSG00000243725 TTC4 980459 sc-eQTL 5.86e-01 0.0534 0.0979 0.327 CD8_Naive L2
ENSG00000006555 TTC22 894997 sc-eQTL 5.24e-01 0.0635 0.0994 0.336 CD8_TCM L2
ENSG00000162402 USP24 480956 sc-eQTL 6.37e-01 0.0397 0.084 0.336 CD8_TCM L2
ENSG00000243725 TTC4 980459 sc-eQTL 8.38e-01 -0.0209 0.102 0.336 CD8_TCM L2
ENSG00000006555 TTC22 894997 sc-eQTL 5.06e-02 -0.193 0.0979 0.336 CD8_TEM L2
ENSG00000162402 USP24 480956 sc-eQTL 1.54e-02 -0.243 0.0993 0.336 CD8_TEM L2
ENSG00000243725 TTC4 980459 sc-eQTL 7.30e-01 -0.0353 0.102 0.336 CD8_TEM L2
ENSG00000006555 TTC22 894997 sc-eQTL 3.29e-01 0.0884 0.0903 0.329 MAIT L2
ENSG00000116133 DHCR24 809125 sc-eQTL 2.27e-01 -0.0809 0.0668 0.329 MAIT L2
ENSG00000162402 USP24 480956 sc-eQTL 8.43e-03 -0.213 0.0802 0.329 MAIT L2
ENSG00000243725 TTC4 980459 sc-eQTL 8.86e-01 0.0135 0.0942 0.329 MAIT L2
ENSG00000006555 TTC22 894997 sc-eQTL 4.40e-02 -0.203 0.1 0.329 NK_CD56bright L2
ENSG00000116133 DHCR24 809125 sc-eQTL 3.39e-01 0.0855 0.0893 0.329 NK_CD56bright L2
ENSG00000162398 LEXM 890257 sc-eQTL 7.34e-01 0.0312 0.0916 0.329 NK_CD56bright L2
ENSG00000162402 USP24 480956 sc-eQTL 7.48e-01 0.0254 0.0789 0.329 NK_CD56bright L2
ENSG00000243725 TTC4 980459 sc-eQTL 7.03e-01 -0.038 0.0995 0.329 NK_CD56bright L2
ENSG00000006555 TTC22 894997 sc-eQTL 7.91e-01 0.0223 0.084 0.328 NK_CD56dim L2
ENSG00000116133 DHCR24 809125 sc-eQTL 1.02e-01 0.143 0.0871 0.328 NK_CD56dim L2
ENSG00000162398 LEXM 890257 sc-eQTL 5.16e-01 0.056 0.0861 0.328 NK_CD56dim L2
ENSG00000162402 USP24 480956 sc-eQTL 6.32e-01 0.0262 0.0547 0.328 NK_CD56dim L2
ENSG00000243725 TTC4 980459 sc-eQTL 4.27e-01 0.0745 0.0936 0.328 NK_CD56dim L2
ENSG00000006555 TTC22 894997 sc-eQTL 2.67e-01 -0.113 0.101 0.324 NK_HLA L2
ENSG00000116133 DHCR24 809125 sc-eQTL 3.50e-01 0.0926 0.0989 0.324 NK_HLA L2
ENSG00000162398 LEXM 890257 sc-eQTL 5.05e-01 0.0642 0.0962 0.324 NK_HLA L2
ENSG00000162402 USP24 480956 sc-eQTL 7.52e-01 -0.0223 0.0706 0.324 NK_HLA L2
ENSG00000243725 TTC4 980459 sc-eQTL 5.99e-01 0.0555 0.105 0.324 NK_HLA L2
ENSG00000006555 TTC22 894997 sc-eQTL 4.39e-01 -0.0694 0.0896 0.328 NK_cytokine L2
ENSG00000116133 DHCR24 809125 sc-eQTL 3.84e-01 0.079 0.0906 0.328 NK_cytokine L2
ENSG00000162398 LEXM 890257 sc-eQTL 6.63e-01 -0.0412 0.0946 0.328 NK_cytokine L2
ENSG00000162402 USP24 480956 sc-eQTL 1.75e-01 0.0873 0.0642 0.328 NK_cytokine L2
ENSG00000243725 TTC4 980459 sc-eQTL 6.31e-02 0.177 0.0948 0.328 NK_cytokine L2
ENSG00000006555 TTC22 894997 sc-eQTL 6.18e-01 0.0547 0.109 0.311 PB L2
ENSG00000116133 DHCR24 809125 sc-eQTL 3.30e-01 -0.0945 0.0967 0.311 PB L2
ENSG00000162402 USP24 480956 sc-eQTL 1.23e-01 -0.181 0.116 0.311 PB L2
ENSG00000162407 PLPP3 -948981 sc-eQTL 9.81e-01 0.0026 0.106 0.311 PB L2
ENSG00000243725 TTC4 980459 sc-eQTL 7.04e-01 0.0434 0.114 0.311 PB L2
ENSG00000006555 TTC22 894997 sc-eQTL 2.21e-01 0.111 0.0903 0.333 Pro_T L2
ENSG00000116133 DHCR24 809125 sc-eQTL 6.86e-01 -0.0312 0.077 0.333 Pro_T L2
ENSG00000162402 USP24 480956 sc-eQTL 9.49e-01 0.00556 0.0874 0.333 Pro_T L2
ENSG00000243725 TTC4 980459 sc-eQTL 2.71e-01 0.106 0.0957 0.333 Pro_T L2
ENSG00000006555 TTC22 894997 sc-eQTL 5.08e-01 -0.0594 0.0897 0.327 Treg L2
ENSG00000162402 USP24 480956 sc-eQTL 3.40e-01 0.0762 0.0798 0.327 Treg L2
ENSG00000243725 TTC4 980459 sc-eQTL 3.83e-01 -0.088 0.101 0.327 Treg L2
ENSG00000116133 DHCR24 809125 sc-eQTL 4.50e-01 0.0637 0.084 0.329 cDC L2
ENSG00000162402 USP24 480956 sc-eQTL 4.62e-01 -0.0763 0.104 0.329 cDC L2
ENSG00000243725 TTC4 980459 sc-eQTL 2.16e-01 0.132 0.106 0.329 cDC L2
ENSG00000116133 DHCR24 809125 sc-eQTL 5.86e-01 0.032 0.0587 0.327 cMono_IL1B L2
ENSG00000162402 USP24 480956 sc-eQTL 9.20e-01 0.00671 0.0665 0.327 cMono_IL1B L2
ENSG00000243725 TTC4 980459 sc-eQTL 9.31e-01 -0.00878 0.102 0.327 cMono_IL1B L2
ENSG00000116133 DHCR24 809125 sc-eQTL 9.03e-01 -0.0068 0.0555 0.327 cMono_S100A L2
ENSG00000162402 USP24 480956 sc-eQTL 6.22e-01 -0.0406 0.0822 0.327 cMono_S100A L2
ENSG00000243725 TTC4 980459 sc-eQTL 2.30e-01 -0.124 0.103 0.327 cMono_S100A L2
ENSG00000006555 TTC22 894997 sc-eQTL 5.60e-01 0.0539 0.0921 0.364 gdT L2
ENSG00000116133 DHCR24 809125 sc-eQTL 7.92e-01 -0.0271 0.103 0.364 gdT L2
ENSG00000162402 USP24 480956 sc-eQTL 5.65e-01 0.0569 0.0987 0.364 gdT L2
ENSG00000243725 TTC4 980459 sc-eQTL 9.79e-01 -0.003 0.116 0.364 gdT L2
ENSG00000116133 DHCR24 809125 sc-eQTL 4.68e-01 -0.0543 0.0746 0.329 intMono L2
ENSG00000162402 USP24 480956 sc-eQTL 5.68e-01 0.0543 0.0951 0.329 intMono L2
ENSG00000243725 TTC4 980459 sc-eQTL 2.50e-01 0.116 0.101 0.329 intMono L2
ENSG00000116133 DHCR24 809125 sc-eQTL 4.12e-02 -0.152 0.0737 0.333 ncMono L2
ENSG00000162402 USP24 480956 sc-eQTL 7.61e-01 -0.0256 0.084 0.333 ncMono L2
ENSG00000243725 TTC4 980459 sc-eQTL 4.50e-01 0.0751 0.0993 0.333 ncMono L2
ENSG00000116133 DHCR24 809125 sc-eQTL 7.47e-04 0.309 0.0899 0.35 pDC L2
ENSG00000162402 USP24 480956 sc-eQTL 2.24e-01 0.0909 0.0745 0.35 pDC L2
ENSG00000243725 TTC4 980459 sc-eQTL 2.44e-01 0.138 0.118 0.35 pDC L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000006555 TTC22 894997 sc-eQTL 9.09e-01 -0.0108 0.0943 0.327 B_Memory LOneK1K
ENSG00000116133 DHCR24 809125 sc-eQTL 3.03e-01 0.0974 0.0944 0.327 B_Memory LOneK1K
ENSG00000162402 USP24 480956 sc-eQTL 6.10e-01 -0.0345 0.0675 0.327 B_Memory LOneK1K
ENSG00000162407 PLPP3 -948981 sc-eQTL 3.89e-01 -0.0725 0.084 0.327 B_Memory LOneK1K
ENSG00000243725 TTC4 980459 sc-eQTL 3.55e-02 -0.195 0.0923 0.327 B_Memory LOneK1K
ENSG00000006555 TTC22 894997 sc-eQTL 6.94e-01 0.0393 0.0997 0.327 B_Naive LOneK1K
ENSG00000116133 DHCR24 809125 sc-eQTL 8.19e-01 0.0206 0.0898 0.327 B_Naive LOneK1K
ENSG00000162402 USP24 480956 sc-eQTL 4.11e-01 -0.0523 0.0635 0.327 B_Naive LOneK1K
ENSG00000162407 PLPP3 -948981 sc-eQTL 6.30e-01 -0.0478 0.0992 0.327 B_Naive LOneK1K
ENSG00000243725 TTC4 980459 sc-eQTL 7.17e-01 -0.0343 0.0947 0.327 B_Naive LOneK1K
ENSG00000116133 DHCR24 809125 sc-eQTL 5.56e-01 0.0336 0.057 0.327 CD14_Mono LOneK1K
ENSG00000162402 USP24 480956 sc-eQTL 8.25e-01 -0.0138 0.0623 0.327 CD14_Mono LOneK1K
ENSG00000243725 TTC4 980459 sc-eQTL 5.94e-01 -0.0552 0.103 0.327 CD14_Mono LOneK1K
ENSG00000116133 DHCR24 809125 sc-eQTL 1.82e-01 -0.0924 0.069 0.325 CD16_Mono LOneK1K
ENSG00000162402 USP24 480956 sc-eQTL 5.56e-01 -0.046 0.078 0.325 CD16_Mono LOneK1K
ENSG00000243725 TTC4 980459 sc-eQTL 3.03e-01 0.101 0.0976 0.325 CD16_Mono LOneK1K
ENSG00000006555 TTC22 894997 sc-eQTL 4.25e-01 -0.0653 0.0818 0.328 NK_CD56dim LOneK1K
ENSG00000116133 DHCR24 809125 sc-eQTL 1.68e-01 0.118 0.0852 0.328 NK_CD56dim LOneK1K
ENSG00000162398 LEXM 890257 sc-eQTL 7.37e-01 0.0271 0.0804 0.328 NK_CD56dim LOneK1K
ENSG00000162402 USP24 480956 sc-eQTL 2.31e-01 0.061 0.0508 0.328 NK_CD56dim LOneK1K
ENSG00000243725 TTC4 980459 sc-eQTL 5.02e-02 0.177 0.0899 0.328 NK_CD56dim LOneK1K

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000234810 AL603840.1 367032 eQTL 1.33e-06 0.151 0.031 0.0 0.0 0.318

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000169174 \N 656772 1.38e-06 6.47e-06 4.64e-07 1.87e-06 2.58e-07 6.73e-07 2.31e-06 9.55e-07 6.04e-06 1.46e-06 2.6e-05 3.37e-06 1.12e-05 2.03e-06 1.23e-06 2e-06 1.55e-06 2.12e-06 2.25e-07 2.86e-07 6.34e-07 4.56e-06 2.13e-06 5.79e-07 7.97e-06 2.68e-07 9.45e-07 1.54e-06 1.72e-06 2.55e-06 1.05e-05 2.9e-08 5.58e-08 6.13e-07 1.88e-06 3.38e-07 5.54e-08 8.17e-08 1.49e-07 8.3e-08 5.44e-08 1.29e-05 2.47e-08 7.32e-09 1.6e-07 3.26e-07 9.12e-08 2.2e-09 5.04e-08
ENSG00000234810 AL603840.1 367032 2.74e-06 9.28e-06 7.5e-07 3.08e-06 5.07e-07 7.53e-07 5.25e-06 2.04e-06 1.25e-05 3.55e-06 5.66e-05 4.54e-06 1.85e-05 3.47e-06 1.87e-06 3.98e-06 2.76e-06 3.79e-06 4.82e-07 6.49e-07 1.8e-06 7.58e-06 3.35e-06 6.79e-07 1.31e-05 4.36e-07 1.38e-06 1.74e-06 3.85e-06 4.58e-06 2.26e-05 8.25e-08 1.5e-07 1.22e-06 2.04e-06 5.3e-07 1.4e-07 9.33e-08 4.78e-07 9.44e-09 2.95e-08 1.76e-05 9.42e-08 1.97e-08 2.62e-07 6.57e-07 1.37e-07 3.13e-08 5e-08