logo

Genes within 1Mb (chr1:55692563:A:G):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000006555 TTC22 891240 sc-eQTL 1.23e-01 0.136 0.0882 0.703 B L1
ENSG00000116133 DHCR24 805368 sc-eQTL 8.90e-01 0.0116 0.0839 0.703 B L1
ENSG00000162402 USP24 477199 sc-eQTL 6.29e-01 -0.0248 0.0511 0.703 B L1
ENSG00000162407 PLPP3 -952738 sc-eQTL 2.91e-02 0.189 0.0859 0.703 B L1
ENSG00000243725 TTC4 976702 sc-eQTL 4.49e-01 -0.0649 0.0856 0.703 B L1
ENSG00000006555 TTC22 891240 sc-eQTL 7.40e-01 -0.023 0.0693 0.703 CD4T L1
ENSG00000162402 USP24 477199 sc-eQTL 4.39e-01 0.0382 0.0493 0.703 CD4T L1
ENSG00000243725 TTC4 976702 sc-eQTL 6.65e-01 0.0322 0.0743 0.703 CD4T L1
ENSG00000006555 TTC22 891240 sc-eQTL 8.05e-01 -0.0148 0.0599 0.703 CD8T L1
ENSG00000162402 USP24 477199 sc-eQTL 8.42e-01 0.00989 0.0496 0.703 CD8T L1
ENSG00000243725 TTC4 976702 sc-eQTL 8.96e-01 -0.0113 0.086 0.703 CD8T L1
ENSG00000116133 DHCR24 805368 sc-eQTL 9.06e-01 -0.00953 0.0806 0.7 DC L1
ENSG00000162402 USP24 477199 sc-eQTL 1.47e-01 0.0715 0.0491 0.7 DC L1
ENSG00000243725 TTC4 976702 sc-eQTL 7.33e-01 0.0327 0.0959 0.7 DC L1
ENSG00000116133 DHCR24 805368 sc-eQTL 7.26e-01 -0.0202 0.0576 0.703 Mono L1
ENSG00000162402 USP24 477199 sc-eQTL 8.07e-01 -0.0129 0.0527 0.703 Mono L1
ENSG00000243725 TTC4 976702 sc-eQTL 4.18e-01 0.0752 0.0927 0.703 Mono L1
ENSG00000006555 TTC22 891240 sc-eQTL 9.65e-01 -0.00348 0.0796 0.702 NK L1
ENSG00000116133 DHCR24 805368 sc-eQTL 4.12e-01 -0.0659 0.0802 0.702 NK L1
ENSG00000162398 LEXM 886500 sc-eQTL 8.77e-01 -0.0116 0.0751 0.702 NK L1
ENSG00000162402 USP24 477199 sc-eQTL 6.54e-02 0.0837 0.0452 0.702 NK L1
ENSG00000243725 TTC4 976702 sc-eQTL 7.15e-03 0.23 0.0846 0.702 NK L1
ENSG00000006555 TTC22 891240 sc-eQTL 1.35e-01 0.107 0.071 0.703 Other_T L1
ENSG00000116133 DHCR24 805368 sc-eQTL 2.32e-02 -0.125 0.0547 0.703 Other_T L1
ENSG00000162402 USP24 477199 sc-eQTL 8.87e-01 0.00936 0.0656 0.703 Other_T L1
ENSG00000243725 TTC4 976702 sc-eQTL 7.35e-01 -0.0303 0.0894 0.703 Other_T L1
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000006555 TTC22 891240 sc-eQTL 5.50e-01 -0.046 0.0768 0.709 B_Activated L2
ENSG00000116133 DHCR24 805368 sc-eQTL 1.50e-01 0.13 0.0898 0.709 B_Activated L2
ENSG00000162402 USP24 477199 sc-eQTL 8.40e-01 -0.0199 0.0983 0.709 B_Activated L2
ENSG00000162407 PLPP3 -952738 sc-eQTL 1.53e-01 -0.141 0.0983 0.709 B_Activated L2
ENSG00000243725 TTC4 976702 sc-eQTL 6.98e-01 -0.0365 0.0941 0.709 B_Activated L2
ENSG00000006555 TTC22 891240 sc-eQTL 7.19e-01 -0.0346 0.096 0.704 B_Intermediate L2
ENSG00000116133 DHCR24 805368 sc-eQTL 7.82e-01 0.0247 0.0891 0.704 B_Intermediate L2
ENSG00000162402 USP24 477199 sc-eQTL 9.30e-01 -0.00619 0.0704 0.704 B_Intermediate L2
ENSG00000162407 PLPP3 -952738 sc-eQTL 9.94e-01 -0.00068 0.0899 0.704 B_Intermediate L2
ENSG00000243725 TTC4 976702 sc-eQTL 6.89e-01 -0.0362 0.0905 0.704 B_Intermediate L2
ENSG00000006555 TTC22 891240 sc-eQTL 1.06e-01 0.148 0.0911 0.707 B_Memory L2
ENSG00000116133 DHCR24 805368 sc-eQTL 9.76e-01 0.00268 0.091 0.707 B_Memory L2
ENSG00000162402 USP24 477199 sc-eQTL 7.23e-01 0.0266 0.075 0.707 B_Memory L2
ENSG00000162407 PLPP3 -952738 sc-eQTL 1.79e-01 0.112 0.0833 0.707 B_Memory L2
ENSG00000243725 TTC4 976702 sc-eQTL 3.63e-01 -0.0874 0.0959 0.707 B_Memory L2
ENSG00000006555 TTC22 891240 sc-eQTL 4.33e-01 0.0742 0.0943 0.703 B_Naive1 L2
ENSG00000116133 DHCR24 805368 sc-eQTL 3.18e-01 -0.0884 0.0884 0.703 B_Naive1 L2
ENSG00000162402 USP24 477199 sc-eQTL 7.82e-01 -0.0176 0.0635 0.703 B_Naive1 L2
ENSG00000162407 PLPP3 -952738 sc-eQTL 1.78e-01 0.118 0.0873 0.703 B_Naive1 L2
ENSG00000243725 TTC4 976702 sc-eQTL 5.79e-01 -0.048 0.0864 0.703 B_Naive1 L2
ENSG00000006555 TTC22 891240 sc-eQTL 5.16e-01 0.062 0.0953 0.706 B_Naive2 L2
ENSG00000116133 DHCR24 805368 sc-eQTL 6.70e-01 -0.0355 0.083 0.706 B_Naive2 L2
ENSG00000162402 USP24 477199 sc-eQTL 7.61e-01 0.0213 0.0697 0.706 B_Naive2 L2
ENSG00000162407 PLPP3 -952738 sc-eQTL 6.84e-02 0.149 0.0811 0.706 B_Naive2 L2
ENSG00000243725 TTC4 976702 sc-eQTL 8.45e-01 0.02 0.102 0.706 B_Naive2 L2
ENSG00000006555 TTC22 891240 sc-eQTL 4.47e-01 0.0679 0.0892 0.698 CD4_CTL L2
ENSG00000162402 USP24 477199 sc-eQTL 7.72e-01 -0.0252 0.0869 0.698 CD4_CTL L2
ENSG00000243725 TTC4 976702 sc-eQTL 3.08e-01 -0.0991 0.097 0.698 CD4_CTL L2
ENSG00000006555 TTC22 891240 sc-eQTL 3.70e-01 -0.0729 0.0811 0.703 CD4_Naive L2
ENSG00000162402 USP24 477199 sc-eQTL 2.87e-02 0.116 0.0528 0.703 CD4_Naive L2
ENSG00000243725 TTC4 976702 sc-eQTL 7.06e-01 0.0307 0.0813 0.703 CD4_Naive L2
ENSG00000006555 TTC22 891240 sc-eQTL 7.52e-01 0.0271 0.0856 0.703 CD4_TCM L2
ENSG00000162402 USP24 477199 sc-eQTL 4.56e-01 -0.0479 0.0641 0.703 CD4_TCM L2
ENSG00000243725 TTC4 976702 sc-eQTL 1.89e-01 0.121 0.0921 0.703 CD4_TCM L2
ENSG00000006555 TTC22 891240 sc-eQTL 2.14e-01 0.122 0.0979 0.703 CD4_TEM L2
ENSG00000162402 USP24 477199 sc-eQTL 7.83e-01 0.02 0.0724 0.703 CD4_TEM L2
ENSG00000243725 TTC4 976702 sc-eQTL 5.38e-01 0.059 0.0957 0.703 CD4_TEM L2
ENSG00000006555 TTC22 891240 sc-eQTL 3.13e-01 0.0798 0.0788 0.703 CD8_CTL L2
ENSG00000162402 USP24 477199 sc-eQTL 8.35e-01 0.0127 0.0613 0.703 CD8_CTL L2
ENSG00000243725 TTC4 976702 sc-eQTL 4.76e-01 0.0654 0.0916 0.703 CD8_CTL L2
ENSG00000006555 TTC22 891240 sc-eQTL 8.30e-01 -0.0189 0.0876 0.703 CD8_Naive L2
ENSG00000162402 USP24 477199 sc-eQTL 7.51e-01 0.0204 0.064 0.703 CD8_Naive L2
ENSG00000243725 TTC4 976702 sc-eQTL 4.26e-01 -0.0746 0.0935 0.703 CD8_Naive L2
ENSG00000006555 TTC22 891240 sc-eQTL 9.21e-01 -0.00966 0.097 0.701 CD8_TCM L2
ENSG00000162402 USP24 477199 sc-eQTL 6.20e-01 -0.0407 0.0819 0.701 CD8_TCM L2
ENSG00000243725 TTC4 976702 sc-eQTL 9.74e-01 -0.00329 0.0996 0.701 CD8_TCM L2
ENSG00000006555 TTC22 891240 sc-eQTL 8.57e-02 -0.165 0.0958 0.703 CD8_TEM L2
ENSG00000162402 USP24 477199 sc-eQTL 1.80e-01 -0.132 0.098 0.703 CD8_TEM L2
ENSG00000243725 TTC4 976702 sc-eQTL 1.05e-01 -0.162 0.0994 0.703 CD8_TEM L2
ENSG00000006555 TTC22 891240 sc-eQTL 3.65e-01 0.0769 0.0847 0.699 MAIT L2
ENSG00000116133 DHCR24 805368 sc-eQTL 9.02e-01 -0.00775 0.0628 0.699 MAIT L2
ENSG00000162402 USP24 477199 sc-eQTL 5.61e-01 -0.0444 0.0764 0.699 MAIT L2
ENSG00000243725 TTC4 976702 sc-eQTL 1.90e-01 -0.116 0.0879 0.699 MAIT L2
ENSG00000006555 TTC22 891240 sc-eQTL 4.67e-01 -0.0698 0.0958 0.704 NK_CD56bright L2
ENSG00000116133 DHCR24 805368 sc-eQTL 8.11e-01 -0.0203 0.0847 0.704 NK_CD56bright L2
ENSG00000162398 LEXM 886500 sc-eQTL 7.72e-01 -0.0252 0.0868 0.704 NK_CD56bright L2
ENSG00000162402 USP24 477199 sc-eQTL 5.83e-01 0.041 0.0747 0.704 NK_CD56bright L2
ENSG00000243725 TTC4 976702 sc-eQTL 6.53e-02 0.173 0.0934 0.704 NK_CD56bright L2
ENSG00000006555 TTC22 891240 sc-eQTL 8.67e-01 -0.0134 0.0799 0.703 NK_CD56dim L2
ENSG00000116133 DHCR24 805368 sc-eQTL 9.17e-02 -0.14 0.0828 0.703 NK_CD56dim L2
ENSG00000162398 LEXM 886500 sc-eQTL 4.74e-01 0.0587 0.0819 0.703 NK_CD56dim L2
ENSG00000162402 USP24 477199 sc-eQTL 8.86e-02 0.0885 0.0517 0.703 NK_CD56dim L2
ENSG00000243725 TTC4 976702 sc-eQTL 4.01e-01 0.0749 0.0891 0.703 NK_CD56dim L2
ENSG00000006555 TTC22 891240 sc-eQTL 2.08e-01 -0.121 0.0955 0.694 NK_HLA L2
ENSG00000116133 DHCR24 805368 sc-eQTL 2.10e-01 -0.117 0.0932 0.694 NK_HLA L2
ENSG00000162398 LEXM 886500 sc-eQTL 1.83e-01 -0.121 0.0905 0.694 NK_HLA L2
ENSG00000162402 USP24 477199 sc-eQTL 6.83e-01 0.0273 0.0667 0.694 NK_HLA L2
ENSG00000243725 TTC4 976702 sc-eQTL 8.86e-01 0.0143 0.0996 0.694 NK_HLA L2
ENSG00000006555 TTC22 891240 sc-eQTL 6.30e-01 0.0415 0.086 0.703 NK_cytokine L2
ENSG00000116133 DHCR24 805368 sc-eQTL 6.43e-01 0.0404 0.087 0.703 NK_cytokine L2
ENSG00000162398 LEXM 886500 sc-eQTL 6.58e-01 -0.0402 0.0907 0.703 NK_cytokine L2
ENSG00000162402 USP24 477199 sc-eQTL 1.77e-01 0.0834 0.0616 0.703 NK_cytokine L2
ENSG00000243725 TTC4 976702 sc-eQTL 3.31e-03 0.267 0.0898 0.703 NK_cytokine L2
ENSG00000006555 TTC22 891240 sc-eQTL 3.90e-01 0.102 0.118 0.715 PB L2
ENSG00000116133 DHCR24 805368 sc-eQTL 1.21e-01 -0.161 0.103 0.715 PB L2
ENSG00000162402 USP24 477199 sc-eQTL 5.94e-01 -0.0678 0.127 0.715 PB L2
ENSG00000162407 PLPP3 -952738 sc-eQTL 2.55e-01 -0.13 0.114 0.715 PB L2
ENSG00000243725 TTC4 976702 sc-eQTL 9.83e-01 0.00256 0.123 0.715 PB L2
ENSG00000006555 TTC22 891240 sc-eQTL 6.28e-01 -0.0428 0.0883 0.707 Pro_T L2
ENSG00000116133 DHCR24 805368 sc-eQTL 1.03e-02 -0.191 0.0739 0.707 Pro_T L2
ENSG00000162402 USP24 477199 sc-eQTL 3.69e-01 0.0766 0.0851 0.707 Pro_T L2
ENSG00000243725 TTC4 976702 sc-eQTL 7.01e-01 0.0359 0.0936 0.707 Pro_T L2
ENSG00000006555 TTC22 891240 sc-eQTL 7.05e-03 -0.235 0.0864 0.703 Treg L2
ENSG00000162402 USP24 477199 sc-eQTL 9.00e-01 -0.00988 0.0783 0.703 Treg L2
ENSG00000243725 TTC4 976702 sc-eQTL 8.92e-01 -0.0134 0.0986 0.703 Treg L2
ENSG00000116133 DHCR24 805368 sc-eQTL 6.23e-01 0.0381 0.0773 0.698 cDC L2
ENSG00000162402 USP24 477199 sc-eQTL 4.51e-01 -0.0719 0.0951 0.698 cDC L2
ENSG00000243725 TTC4 976702 sc-eQTL 2.91e-01 0.103 0.0974 0.698 cDC L2
ENSG00000116133 DHCR24 805368 sc-eQTL 2.51e-01 -0.0642 0.0558 0.703 cMono_IL1B L2
ENSG00000162402 USP24 477199 sc-eQTL 8.04e-01 0.0157 0.0633 0.703 cMono_IL1B L2
ENSG00000243725 TTC4 976702 sc-eQTL 3.35e-01 0.0933 0.0966 0.703 cMono_IL1B L2
ENSG00000116133 DHCR24 805368 sc-eQTL 2.36e-01 0.0623 0.0524 0.703 cMono_S100A L2
ENSG00000162402 USP24 477199 sc-eQTL 5.45e-01 -0.0473 0.0779 0.703 cMono_S100A L2
ENSG00000243725 TTC4 976702 sc-eQTL 9.47e-01 0.00648 0.0976 0.703 cMono_S100A L2
ENSG00000006555 TTC22 891240 sc-eQTL 3.88e-02 0.179 0.0858 0.7 gdT L2
ENSG00000116133 DHCR24 805368 sc-eQTL 4.07e-01 -0.0805 0.0969 0.7 gdT L2
ENSG00000162402 USP24 477199 sc-eQTL 3.51e-01 0.0871 0.093 0.7 gdT L2
ENSG00000243725 TTC4 976702 sc-eQTL 6.97e-01 0.0427 0.109 0.7 gdT L2
ENSG00000116133 DHCR24 805368 sc-eQTL 2.50e-01 -0.0807 0.07 0.704 intMono L2
ENSG00000162402 USP24 477199 sc-eQTL 9.39e-01 0.00686 0.0895 0.704 intMono L2
ENSG00000243725 TTC4 976702 sc-eQTL 7.88e-01 -0.0257 0.0953 0.704 intMono L2
ENSG00000116133 DHCR24 805368 sc-eQTL 2.24e-01 -0.0867 0.0711 0.71 ncMono L2
ENSG00000162402 USP24 477199 sc-eQTL 8.58e-01 -0.0144 0.0804 0.71 ncMono L2
ENSG00000243725 TTC4 976702 sc-eQTL 1.64e-01 0.132 0.0948 0.71 ncMono L2
ENSG00000116133 DHCR24 805368 sc-eQTL 1.26e-01 0.134 0.0873 0.712 pDC L2
ENSG00000162402 USP24 477199 sc-eQTL 4.59e-02 0.14 0.0696 0.712 pDC L2
ENSG00000243725 TTC4 976702 sc-eQTL 8.21e-01 -0.0253 0.111 0.712 pDC L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000006555 TTC22 891240 sc-eQTL 6.12e-01 0.0461 0.0908 0.703 B_Memory LOneK1K
ENSG00000116133 DHCR24 805368 sc-eQTL 4.94e-01 0.0624 0.0911 0.703 B_Memory LOneK1K
ENSG00000162402 USP24 477199 sc-eQTL 6.20e-01 0.0323 0.0651 0.703 B_Memory LOneK1K
ENSG00000162407 PLPP3 -952738 sc-eQTL 5.55e-01 0.048 0.081 0.703 B_Memory LOneK1K
ENSG00000243725 TTC4 976702 sc-eQTL 3.28e-01 -0.0879 0.0897 0.703 B_Memory LOneK1K
ENSG00000006555 TTC22 891240 sc-eQTL 1.48e-01 0.139 0.0956 0.703 B_Naive LOneK1K
ENSG00000116133 DHCR24 805368 sc-eQTL 5.47e-01 -0.0522 0.0865 0.703 B_Naive LOneK1K
ENSG00000162402 USP24 477199 sc-eQTL 9.41e-01 0.00453 0.0613 0.703 B_Naive LOneK1K
ENSG00000162407 PLPP3 -952738 sc-eQTL 2.46e-02 0.214 0.0945 0.703 B_Naive LOneK1K
ENSG00000243725 TTC4 976702 sc-eQTL 8.58e-01 0.0163 0.0913 0.703 B_Naive LOneK1K
ENSG00000116133 DHCR24 805368 sc-eQTL 7.68e-01 -0.016 0.0543 0.703 CD14_Mono LOneK1K
ENSG00000162402 USP24 477199 sc-eQTL 9.40e-01 -0.00447 0.0593 0.703 CD14_Mono LOneK1K
ENSG00000243725 TTC4 976702 sc-eQTL 6.03e-01 0.0512 0.0983 0.703 CD14_Mono LOneK1K
ENSG00000116133 DHCR24 805368 sc-eQTL 2.27e-01 -0.0814 0.0673 0.7 CD16_Mono LOneK1K
ENSG00000162402 USP24 477199 sc-eQTL 8.42e-01 -0.0152 0.076 0.7 CD16_Mono LOneK1K
ENSG00000243725 TTC4 976702 sc-eQTL 3.78e-01 0.084 0.0951 0.7 CD16_Mono LOneK1K
ENSG00000006555 TTC22 891240 sc-eQTL 8.04e-01 -0.0194 0.0781 0.703 NK_CD56dim LOneK1K
ENSG00000116133 DHCR24 805368 sc-eQTL 2.69e-01 -0.0903 0.0814 0.703 NK_CD56dim LOneK1K
ENSG00000162398 LEXM 886500 sc-eQTL 9.97e-01 0.000313 0.0767 0.703 NK_CD56dim LOneK1K
ENSG00000162402 USP24 477199 sc-eQTL 5.34e-02 0.0937 0.0482 0.703 NK_CD56dim LOneK1K
ENSG00000243725 TTC4 976702 sc-eQTL 1.52e-02 0.209 0.0854 0.703 NK_CD56dim LOneK1K

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000116133 DHCR24 805368 eQTL 0.011 -0.068 0.0267 0.0 0.0 0.323
ENSG00000234810 AL603840.1 363275 eQTL 5.36e-18 0.262 0.0297 0.0119 0.0126 0.323

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000234810 AL603840.1 363275 1.29e-06 9.07e-07 1.87e-07 3.1e-07 1.14e-07 3.18e-07 7.1e-07 2.28e-07 8.39e-07 2.85e-07 1.1e-06 5.51e-07 1.21e-06 2.1e-07 3.86e-07 4.14e-07 6.44e-07 4.52e-07 3.51e-07 3.72e-07 2.62e-07 5.66e-07 5.49e-07 3.21e-07 1.47e-06 2.52e-07 5.04e-07 4.94e-07 6.62e-07 8.51e-07 4.26e-07 3.7e-08 1.04e-07 2.1e-07 3.24e-07 2.76e-07 1.93e-07 1.37e-07 8.06e-08 8.72e-09 2.36e-07 9.58e-07 6.44e-08 1.28e-08 1.81e-07 7.09e-08 1.67e-07 8.66e-08 5.4e-08