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Genes within 1Mb (chr1:55689354:C:T):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000006555 TTC22 888031 sc-eQTL 7.23e-02 0.16 0.0888 0.707 B L1
ENSG00000116133 DHCR24 802159 sc-eQTL 8.90e-01 0.0117 0.0846 0.707 B L1
ENSG00000162402 USP24 473990 sc-eQTL 5.21e-01 -0.0331 0.0516 0.707 B L1
ENSG00000162407 PLPP3 -955947 sc-eQTL 3.88e-02 0.18 0.0868 0.707 B L1
ENSG00000243725 TTC4 973493 sc-eQTL 5.27e-01 -0.0547 0.0864 0.707 B L1
ENSG00000006555 TTC22 888031 sc-eQTL 9.13e-01 -0.00756 0.0694 0.707 CD4T L1
ENSG00000162402 USP24 473990 sc-eQTL 4.49e-01 0.0375 0.0494 0.707 CD4T L1
ENSG00000243725 TTC4 973493 sc-eQTL 5.49e-01 0.0446 0.0744 0.707 CD4T L1
ENSG00000006555 TTC22 888031 sc-eQTL 7.10e-01 -0.0224 0.06 0.707 CD8T L1
ENSG00000162402 USP24 473990 sc-eQTL 6.96e-01 0.0194 0.0497 0.707 CD8T L1
ENSG00000243725 TTC4 973493 sc-eQTL 7.36e-01 0.0291 0.0862 0.707 CD8T L1
ENSG00000116133 DHCR24 802159 sc-eQTL 9.77e-01 -0.00234 0.0811 0.705 DC L1
ENSG00000162402 USP24 473990 sc-eQTL 9.18e-02 0.0835 0.0493 0.705 DC L1
ENSG00000243725 TTC4 973493 sc-eQTL 5.71e-01 0.0547 0.0965 0.705 DC L1
ENSG00000116133 DHCR24 802159 sc-eQTL 7.46e-01 -0.0189 0.0581 0.707 Mono L1
ENSG00000162402 USP24 473990 sc-eQTL 8.44e-01 -0.0105 0.0532 0.707 Mono L1
ENSG00000243725 TTC4 973493 sc-eQTL 4.11e-01 0.0771 0.0935 0.707 Mono L1
ENSG00000006555 TTC22 888031 sc-eQTL 8.72e-01 0.0129 0.0797 0.706 NK L1
ENSG00000116133 DHCR24 802159 sc-eQTL 3.38e-01 -0.0771 0.0803 0.706 NK L1
ENSG00000162398 LEXM 883291 sc-eQTL 8.67e-01 0.0126 0.0752 0.706 NK L1
ENSG00000162402 USP24 473990 sc-eQTL 6.53e-02 0.0838 0.0452 0.706 NK L1
ENSG00000243725 TTC4 973493 sc-eQTL 8.96e-03 0.224 0.0849 0.706 NK L1
ENSG00000006555 TTC22 888031 sc-eQTL 8.98e-02 0.122 0.0717 0.707 Other_T L1
ENSG00000116133 DHCR24 802159 sc-eQTL 3.87e-02 -0.115 0.0554 0.707 Other_T L1
ENSG00000162402 USP24 473990 sc-eQTL 9.97e-01 0.000216 0.0663 0.707 Other_T L1
ENSG00000243725 TTC4 973493 sc-eQTL 5.74e-01 -0.0509 0.0903 0.707 Other_T L1
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000006555 TTC22 888031 sc-eQTL 6.93e-01 -0.0306 0.0774 0.714 B_Activated L2
ENSG00000116133 DHCR24 802159 sc-eQTL 7.14e-02 0.163 0.09 0.714 B_Activated L2
ENSG00000162402 USP24 473990 sc-eQTL 8.30e-01 -0.0213 0.099 0.714 B_Activated L2
ENSG00000162407 PLPP3 -955947 sc-eQTL 1.91e-01 -0.13 0.099 0.714 B_Activated L2
ENSG00000243725 TTC4 973493 sc-eQTL 7.05e-01 -0.0359 0.0947 0.714 B_Activated L2
ENSG00000006555 TTC22 888031 sc-eQTL 8.35e-01 -0.0202 0.097 0.708 B_Intermediate L2
ENSG00000116133 DHCR24 802159 sc-eQTL 6.80e-01 0.0371 0.09 0.708 B_Intermediate L2
ENSG00000162402 USP24 473990 sc-eQTL 6.44e-01 -0.0328 0.071 0.708 B_Intermediate L2
ENSG00000162407 PLPP3 -955947 sc-eQTL 8.51e-01 -0.0171 0.0908 0.708 B_Intermediate L2
ENSG00000243725 TTC4 973493 sc-eQTL 6.76e-01 -0.0382 0.0914 0.708 B_Intermediate L2
ENSG00000006555 TTC22 888031 sc-eQTL 1.19e-01 0.144 0.0917 0.711 B_Memory L2
ENSG00000116133 DHCR24 802159 sc-eQTL 9.37e-01 -0.00724 0.0916 0.711 B_Memory L2
ENSG00000162402 USP24 473990 sc-eQTL 7.64e-01 0.0227 0.0755 0.711 B_Memory L2
ENSG00000162407 PLPP3 -955947 sc-eQTL 1.74e-01 0.114 0.0838 0.711 B_Memory L2
ENSG00000243725 TTC4 973493 sc-eQTL 2.88e-01 -0.103 0.0965 0.711 B_Memory L2
ENSG00000006555 TTC22 888031 sc-eQTL 3.29e-01 0.0931 0.0952 0.707 B_Naive1 L2
ENSG00000116133 DHCR24 802159 sc-eQTL 6.30e-01 -0.0431 0.0894 0.707 B_Naive1 L2
ENSG00000162402 USP24 473990 sc-eQTL 6.17e-01 -0.0321 0.0641 0.707 B_Naive1 L2
ENSG00000162407 PLPP3 -955947 sc-eQTL 2.78e-01 0.096 0.0883 0.707 B_Naive1 L2
ENSG00000243725 TTC4 973493 sc-eQTL 8.61e-01 -0.0153 0.0874 0.707 B_Naive1 L2
ENSG00000006555 TTC22 888031 sc-eQTL 3.95e-01 0.0819 0.096 0.71 B_Naive2 L2
ENSG00000116133 DHCR24 802159 sc-eQTL 5.95e-01 -0.0446 0.0837 0.71 B_Naive2 L2
ENSG00000162402 USP24 473990 sc-eQTL 6.64e-01 0.0306 0.0703 0.71 B_Naive2 L2
ENSG00000162407 PLPP3 -955947 sc-eQTL 6.28e-02 0.153 0.0818 0.71 B_Naive2 L2
ENSG00000243725 TTC4 973493 sc-eQTL 8.80e-01 0.0155 0.103 0.71 B_Naive2 L2
ENSG00000006555 TTC22 888031 sc-eQTL 5.36e-01 0.0558 0.09 0.7 CD4_CTL L2
ENSG00000162402 USP24 473990 sc-eQTL 8.49e-01 -0.0167 0.0876 0.7 CD4_CTL L2
ENSG00000243725 TTC4 973493 sc-eQTL 2.99e-01 -0.102 0.0978 0.7 CD4_CTL L2
ENSG00000006555 TTC22 888031 sc-eQTL 4.37e-01 -0.0633 0.0813 0.707 CD4_Naive L2
ENSG00000162402 USP24 473990 sc-eQTL 4.56e-02 0.107 0.053 0.707 CD4_Naive L2
ENSG00000243725 TTC4 973493 sc-eQTL 5.88e-01 0.0442 0.0815 0.707 CD4_Naive L2
ENSG00000006555 TTC22 888031 sc-eQTL 4.47e-01 0.0655 0.0859 0.707 CD4_TCM L2
ENSG00000162402 USP24 473990 sc-eQTL 4.17e-01 -0.0524 0.0644 0.707 CD4_TCM L2
ENSG00000243725 TTC4 973493 sc-eQTL 1.38e-01 0.138 0.0924 0.707 CD4_TCM L2
ENSG00000006555 TTC22 888031 sc-eQTL 1.57e-01 0.14 0.0983 0.707 CD4_TEM L2
ENSG00000162402 USP24 473990 sc-eQTL 7.25e-01 0.0256 0.0728 0.707 CD4_TEM L2
ENSG00000243725 TTC4 973493 sc-eQTL 5.73e-01 0.0543 0.0962 0.707 CD4_TEM L2
ENSG00000006555 TTC22 888031 sc-eQTL 3.13e-01 0.0799 0.079 0.707 CD8_CTL L2
ENSG00000162402 USP24 473990 sc-eQTL 7.17e-01 0.0223 0.0614 0.707 CD8_CTL L2
ENSG00000243725 TTC4 973493 sc-eQTL 3.87e-01 0.0795 0.0917 0.707 CD8_CTL L2
ENSG00000006555 TTC22 888031 sc-eQTL 7.34e-01 -0.0299 0.0878 0.707 CD8_Naive L2
ENSG00000162402 USP24 473990 sc-eQTL 6.85e-01 0.0261 0.0642 0.707 CD8_Naive L2
ENSG00000243725 TTC4 973493 sc-eQTL 4.11e-01 -0.0772 0.0938 0.707 CD8_Naive L2
ENSG00000006555 TTC22 888031 sc-eQTL 8.41e-01 0.0196 0.0975 0.706 CD8_TCM L2
ENSG00000162402 USP24 473990 sc-eQTL 7.38e-01 -0.0276 0.0823 0.706 CD8_TCM L2
ENSG00000243725 TTC4 973493 sc-eQTL 8.17e-01 0.0232 0.1 0.706 CD8_TCM L2
ENSG00000006555 TTC22 888031 sc-eQTL 2.96e-02 -0.211 0.0962 0.708 CD8_TEM L2
ENSG00000162402 USP24 473990 sc-eQTL 1.01e-01 -0.163 0.0986 0.708 CD8_TEM L2
ENSG00000243725 TTC4 973493 sc-eQTL 1.25e-01 -0.154 0.1 0.708 CD8_TEM L2
ENSG00000006555 TTC22 888031 sc-eQTL 3.25e-01 0.0842 0.0853 0.703 MAIT L2
ENSG00000116133 DHCR24 802159 sc-eQTL 8.71e-01 -0.0103 0.0633 0.703 MAIT L2
ENSG00000162402 USP24 473990 sc-eQTL 5.51e-01 -0.046 0.0769 0.703 MAIT L2
ENSG00000243725 TTC4 973493 sc-eQTL 1.41e-01 -0.131 0.0885 0.703 MAIT L2
ENSG00000006555 TTC22 888031 sc-eQTL 4.78e-01 -0.0687 0.0967 0.707 NK_CD56bright L2
ENSG00000116133 DHCR24 802159 sc-eQTL 7.18e-01 -0.031 0.0855 0.707 NK_CD56bright L2
ENSG00000162398 LEXM 883291 sc-eQTL 6.89e-01 -0.0351 0.0876 0.707 NK_CD56bright L2
ENSG00000162402 USP24 473990 sc-eQTL 6.71e-01 0.0321 0.0754 0.707 NK_CD56bright L2
ENSG00000243725 TTC4 973493 sc-eQTL 4.42e-02 0.191 0.0942 0.707 NK_CD56bright L2
ENSG00000006555 TTC22 888031 sc-eQTL 9.69e-01 0.00309 0.0802 0.707 NK_CD56dim L2
ENSG00000116133 DHCR24 802159 sc-eQTL 1.25e-01 -0.128 0.0832 0.707 NK_CD56dim L2
ENSG00000162398 LEXM 883291 sc-eQTL 2.01e-01 0.105 0.0819 0.707 NK_CD56dim L2
ENSG00000162402 USP24 473990 sc-eQTL 1.04e-01 0.0848 0.0519 0.707 NK_CD56dim L2
ENSG00000243725 TTC4 973493 sc-eQTL 5.81e-01 0.0494 0.0894 0.707 NK_CD56dim L2
ENSG00000006555 TTC22 888031 sc-eQTL 2.51e-01 -0.11 0.0958 0.699 NK_HLA L2
ENSG00000116133 DHCR24 802159 sc-eQTL 2.38e-01 -0.111 0.0934 0.699 NK_HLA L2
ENSG00000162398 LEXM 883291 sc-eQTL 3.05e-01 -0.0934 0.0908 0.699 NK_HLA L2
ENSG00000162402 USP24 473990 sc-eQTL 5.60e-01 0.039 0.0668 0.699 NK_HLA L2
ENSG00000243725 TTC4 973493 sc-eQTL 9.43e-01 0.0071 0.0998 0.699 NK_HLA L2
ENSG00000006555 TTC22 888031 sc-eQTL 3.92e-01 0.0738 0.0859 0.707 NK_cytokine L2
ENSG00000116133 DHCR24 802159 sc-eQTL 7.87e-01 0.0235 0.0871 0.707 NK_cytokine L2
ENSG00000162398 LEXM 883291 sc-eQTL 6.97e-01 -0.0354 0.0908 0.707 NK_cytokine L2
ENSG00000162402 USP24 473990 sc-eQTL 2.02e-01 0.0789 0.0616 0.707 NK_cytokine L2
ENSG00000243725 TTC4 973493 sc-eQTL 2.76e-03 0.272 0.0898 0.707 NK_cytokine L2
ENSG00000006555 TTC22 888031 sc-eQTL 4.65e-01 0.0858 0.117 0.722 PB L2
ENSG00000116133 DHCR24 802159 sc-eQTL 9.01e-02 -0.176 0.103 0.722 PB L2
ENSG00000162402 USP24 473990 sc-eQTL 4.56e-01 -0.0941 0.126 0.722 PB L2
ENSG00000162407 PLPP3 -955947 sc-eQTL 2.45e-01 -0.132 0.113 0.722 PB L2
ENSG00000243725 TTC4 973493 sc-eQTL 8.17e-01 0.0284 0.122 0.722 PB L2
ENSG00000006555 TTC22 888031 sc-eQTL 7.78e-01 -0.0252 0.089 0.711 Pro_T L2
ENSG00000116133 DHCR24 802159 sc-eQTL 1.78e-02 -0.178 0.0747 0.711 Pro_T L2
ENSG00000162402 USP24 473990 sc-eQTL 2.72e-01 0.0943 0.0856 0.711 Pro_T L2
ENSG00000243725 TTC4 973493 sc-eQTL 9.18e-01 0.00968 0.0943 0.711 Pro_T L2
ENSG00000006555 TTC22 888031 sc-eQTL 7.00e-03 -0.237 0.0871 0.707 Treg L2
ENSG00000162402 USP24 473990 sc-eQTL 8.66e-01 -0.0134 0.0789 0.707 Treg L2
ENSG00000243725 TTC4 973493 sc-eQTL 9.59e-01 0.00517 0.0994 0.707 Treg L2
ENSG00000116133 DHCR24 802159 sc-eQTL 6.06e-01 0.0402 0.0778 0.702 cDC L2
ENSG00000162402 USP24 473990 sc-eQTL 5.88e-01 -0.052 0.0958 0.702 cDC L2
ENSG00000243725 TTC4 973493 sc-eQTL 2.07e-01 0.124 0.0979 0.702 cDC L2
ENSG00000116133 DHCR24 802159 sc-eQTL 2.82e-01 -0.0606 0.0562 0.707 cMono_IL1B L2
ENSG00000162402 USP24 473990 sc-eQTL 8.98e-01 0.00821 0.0638 0.707 cMono_IL1B L2
ENSG00000243725 TTC4 973493 sc-eQTL 4.15e-01 0.0797 0.0974 0.707 cMono_IL1B L2
ENSG00000116133 DHCR24 802159 sc-eQTL 2.51e-01 0.0609 0.0529 0.707 cMono_S100A L2
ENSG00000162402 USP24 473990 sc-eQTL 6.28e-01 -0.0381 0.0786 0.707 cMono_S100A L2
ENSG00000243725 TTC4 973493 sc-eQTL 8.10e-01 0.0238 0.0984 0.707 cMono_S100A L2
ENSG00000006555 TTC22 888031 sc-eQTL 1.30e-02 0.218 0.0866 0.7 gdT L2
ENSG00000116133 DHCR24 802159 sc-eQTL 5.95e-01 -0.0525 0.0986 0.7 gdT L2
ENSG00000162402 USP24 473990 sc-eQTL 2.83e-01 0.102 0.0944 0.7 gdT L2
ENSG00000243725 TTC4 973493 sc-eQTL 9.71e-01 0.00399 0.111 0.7 gdT L2
ENSG00000116133 DHCR24 802159 sc-eQTL 1.60e-01 -0.0993 0.0704 0.709 intMono L2
ENSG00000162402 USP24 473990 sc-eQTL 7.80e-01 0.0252 0.0901 0.709 intMono L2
ENSG00000243725 TTC4 973493 sc-eQTL 5.82e-01 -0.0528 0.0958 0.709 intMono L2
ENSG00000116133 DHCR24 802159 sc-eQTL 2.17e-01 -0.089 0.0719 0.715 ncMono L2
ENSG00000162402 USP24 473990 sc-eQTL 9.18e-01 0.00844 0.0814 0.715 ncMono L2
ENSG00000243725 TTC4 973493 sc-eQTL 1.41e-01 0.142 0.0958 0.715 ncMono L2
ENSG00000116133 DHCR24 802159 sc-eQTL 1.54e-01 0.128 0.0894 0.715 pDC L2
ENSG00000162402 USP24 473990 sc-eQTL 3.06e-02 0.155 0.0711 0.715 pDC L2
ENSG00000243725 TTC4 973493 sc-eQTL 8.87e-01 -0.0162 0.114 0.715 pDC L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000006555 TTC22 888031 sc-eQTL 4.66e-01 0.0668 0.0915 0.707 B_Memory LOneK1K
ENSG00000116133 DHCR24 802159 sc-eQTL 5.08e-01 0.061 0.0919 0.707 B_Memory LOneK1K
ENSG00000162402 USP24 473990 sc-eQTL 8.08e-01 0.016 0.0657 0.707 B_Memory LOneK1K
ENSG00000162407 PLPP3 -955947 sc-eQTL 5.90e-01 0.0441 0.0817 0.707 B_Memory LOneK1K
ENSG00000243725 TTC4 973493 sc-eQTL 2.66e-01 -0.101 0.0903 0.707 B_Memory LOneK1K
ENSG00000006555 TTC22 888031 sc-eQTL 8.75e-02 0.165 0.0962 0.707 B_Naive LOneK1K
ENSG00000116133 DHCR24 802159 sc-eQTL 7.09e-01 -0.0326 0.0872 0.707 B_Naive LOneK1K
ENSG00000162402 USP24 473990 sc-eQTL 9.63e-01 -0.0029 0.0618 0.707 B_Naive LOneK1K
ENSG00000162407 PLPP3 -955947 sc-eQTL 3.40e-02 0.204 0.0954 0.707 B_Naive LOneK1K
ENSG00000243725 TTC4 973493 sc-eQTL 6.85e-01 0.0374 0.092 0.707 B_Naive LOneK1K
ENSG00000116133 DHCR24 802159 sc-eQTL 8.11e-01 -0.0131 0.0547 0.707 CD14_Mono LOneK1K
ENSG00000162402 USP24 473990 sc-eQTL 9.23e-01 -0.00576 0.0598 0.707 CD14_Mono LOneK1K
ENSG00000243725 TTC4 973493 sc-eQTL 6.04e-01 0.0516 0.0991 0.707 CD14_Mono LOneK1K
ENSG00000116133 DHCR24 802159 sc-eQTL 1.88e-01 -0.0895 0.0678 0.705 CD16_Mono LOneK1K
ENSG00000162402 USP24 473990 sc-eQTL 9.95e-01 0.000512 0.0766 0.705 CD16_Mono LOneK1K
ENSG00000243725 TTC4 973493 sc-eQTL 3.71e-01 0.0859 0.0958 0.705 CD16_Mono LOneK1K
ENSG00000006555 TTC22 888031 sc-eQTL 8.91e-01 0.0107 0.0782 0.707 NK_CD56dim LOneK1K
ENSG00000116133 DHCR24 802159 sc-eQTL 2.32e-01 -0.0975 0.0814 0.707 NK_CD56dim LOneK1K
ENSG00000162398 LEXM 883291 sc-eQTL 6.43e-01 0.0356 0.0767 0.707 NK_CD56dim LOneK1K
ENSG00000162402 USP24 473990 sc-eQTL 6.43e-02 0.0898 0.0483 0.707 NK_CD56dim LOneK1K
ENSG00000243725 TTC4 973493 sc-eQTL 2.79e-02 0.19 0.0856 0.707 NK_CD56dim LOneK1K

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000116133 DHCR24 802159 eQTL 0.0054 -0.0758 0.0272 0.0 0.0 0.308
ENSG00000234810 AL603840.1 360066 eQTL 2.83e-17 0.261 0.0303 0.0 0.0 0.308

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000234810 AL603840.1 360066 1.04e-06 7.56e-07 1.5e-07 4.31e-07 1.11e-07 3.08e-07 6.29e-07 1.91e-07 6.18e-07 3.04e-07 9.07e-07 5.08e-07 9.79e-07 1.59e-07 3.13e-07 3.41e-07 5.63e-07 4.27e-07 2.79e-07 1.91e-07 2.55e-07 5.18e-07 4.06e-07 2.6e-07 1.13e-06 2.49e-07 4.27e-07 3.62e-07 5.42e-07 7.6e-07 3.67e-07 4.34e-08 5.82e-08 1.71e-07 3.44e-07 2.15e-07 1.83e-07 1.14e-07 7.41e-08 2.24e-08 1.16e-07 7.52e-07 6.37e-08 5.61e-09 1.94e-07 3.41e-08 1.37e-07 5.93e-08 5.94e-08