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Genes within 1Mb (chr1:55645999:G:A):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000006555 TTC22 844676 sc-eQTL 2.69e-01 0.0935 0.0844 0.47 B L1
ENSG00000116133 DHCR24 758804 sc-eQTL 4.83e-01 0.0562 0.08 0.47 B L1
ENSG00000162402 USP24 430635 sc-eQTL 8.61e-01 -0.00856 0.0489 0.47 B L1
ENSG00000162407 PLPP3 -999302 sc-eQTL 8.00e-01 -0.021 0.0829 0.47 B L1
ENSG00000243725 TTC4 930138 sc-eQTL 2.66e-01 -0.091 0.0816 0.47 B L1
ENSG00000006555 TTC22 844676 sc-eQTL 3.74e-01 -0.0591 0.0664 0.47 CD4T L1
ENSG00000162402 USP24 430635 sc-eQTL 6.59e-01 -0.0209 0.0474 0.47 CD4T L1
ENSG00000243725 TTC4 930138 sc-eQTL 6.40e-01 0.0334 0.0713 0.47 CD4T L1
ENSG00000006555 TTC22 844676 sc-eQTL 3.33e-01 -0.0561 0.0578 0.47 CD8T L1
ENSG00000162402 USP24 430635 sc-eQTL 7.93e-01 0.0126 0.0479 0.47 CD8T L1
ENSG00000243725 TTC4 930138 sc-eQTL 4.66e-01 -0.0606 0.083 0.47 CD8T L1
ENSG00000116133 DHCR24 758804 sc-eQTL 3.99e-01 0.0664 0.0785 0.471 DC L1
ENSG00000162402 USP24 430635 sc-eQTL 2.19e-01 0.0592 0.048 0.471 DC L1
ENSG00000243725 TTC4 930138 sc-eQTL 2.00e-01 -0.12 0.0933 0.471 DC L1
ENSG00000116133 DHCR24 758804 sc-eQTL 4.98e-01 0.0375 0.0553 0.47 Mono L1
ENSG00000162402 USP24 430635 sc-eQTL 9.95e-01 -0.000326 0.0507 0.47 Mono L1
ENSG00000243725 TTC4 930138 sc-eQTL 5.34e-01 0.0556 0.0892 0.47 Mono L1
ENSG00000006555 TTC22 844676 sc-eQTL 3.10e-01 0.0775 0.0761 0.47 NK L1
ENSG00000116133 DHCR24 758804 sc-eQTL 4.45e-01 -0.0589 0.0769 0.47 NK L1
ENSG00000162398 LEXM 839936 sc-eQTL 1.72e-01 -0.0982 0.0717 0.47 NK L1
ENSG00000162402 USP24 430635 sc-eQTL 3.40e-02 0.0922 0.0432 0.47 NK L1
ENSG00000243725 TTC4 930138 sc-eQTL 6.12e-01 0.0419 0.0825 0.47 NK L1
ENSG00000006555 TTC22 844676 sc-eQTL 2.81e-01 0.0741 0.0686 0.47 Other_T L1
ENSG00000116133 DHCR24 758804 sc-eQTL 3.63e-01 -0.0485 0.0532 0.47 Other_T L1
ENSG00000162402 USP24 430635 sc-eQTL 3.25e-01 -0.0622 0.063 0.47 Other_T L1
ENSG00000243725 TTC4 930138 sc-eQTL 4.41e-01 0.0664 0.0859 0.47 Other_T L1
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000006555 TTC22 844676 sc-eQTL 9.13e-01 -0.00787 0.0719 0.474 B_Activated L2
ENSG00000116133 DHCR24 758804 sc-eQTL 7.00e-02 0.152 0.0836 0.474 B_Activated L2
ENSG00000162402 USP24 430635 sc-eQTL 7.48e-01 -0.0295 0.0919 0.474 B_Activated L2
ENSG00000162407 PLPP3 -999302 sc-eQTL 5.11e-01 -0.0608 0.0923 0.474 B_Activated L2
ENSG00000243725 TTC4 930138 sc-eQTL 3.83e-01 -0.0768 0.0878 0.474 B_Activated L2
ENSG00000006555 TTC22 844676 sc-eQTL 7.61e-01 -0.0281 0.0921 0.472 B_Intermediate L2
ENSG00000116133 DHCR24 758804 sc-eQTL 2.85e-01 0.0913 0.0853 0.472 B_Intermediate L2
ENSG00000162402 USP24 430635 sc-eQTL 4.53e-02 0.135 0.0668 0.472 B_Intermediate L2
ENSG00000162407 PLPP3 -999302 sc-eQTL 6.78e-01 0.0359 0.0862 0.472 B_Intermediate L2
ENSG00000243725 TTC4 930138 sc-eQTL 6.31e-01 -0.0418 0.0868 0.472 B_Intermediate L2
ENSG00000006555 TTC22 844676 sc-eQTL 8.30e-01 -0.0191 0.0887 0.474 B_Memory L2
ENSG00000116133 DHCR24 758804 sc-eQTL 7.67e-01 0.0261 0.088 0.474 B_Memory L2
ENSG00000162402 USP24 430635 sc-eQTL 1.98e-01 -0.0934 0.0723 0.474 B_Memory L2
ENSG00000162407 PLPP3 -999302 sc-eQTL 5.24e-01 0.0516 0.0809 0.474 B_Memory L2
ENSG00000243725 TTC4 930138 sc-eQTL 1.69e-01 -0.128 0.0926 0.474 B_Memory L2
ENSG00000006555 TTC22 844676 sc-eQTL 3.92e-01 0.0772 0.0899 0.47 B_Naive1 L2
ENSG00000116133 DHCR24 758804 sc-eQTL 4.38e-01 -0.0655 0.0843 0.47 B_Naive1 L2
ENSG00000162402 USP24 430635 sc-eQTL 1.75e-01 -0.0821 0.0603 0.47 B_Naive1 L2
ENSG00000162407 PLPP3 -999302 sc-eQTL 7.50e-01 0.0266 0.0836 0.47 B_Naive1 L2
ENSG00000243725 TTC4 930138 sc-eQTL 7.64e-01 0.0248 0.0824 0.47 B_Naive1 L2
ENSG00000006555 TTC22 844676 sc-eQTL 4.15e-01 0.0746 0.0913 0.472 B_Naive2 L2
ENSG00000116133 DHCR24 758804 sc-eQTL 7.09e-01 -0.0298 0.0796 0.472 B_Naive2 L2
ENSG00000162402 USP24 430635 sc-eQTL 7.98e-01 0.0171 0.0668 0.472 B_Naive2 L2
ENSG00000162407 PLPP3 -999302 sc-eQTL 5.08e-01 -0.0519 0.0783 0.472 B_Naive2 L2
ENSG00000243725 TTC4 930138 sc-eQTL 2.22e-01 0.12 0.0975 0.472 B_Naive2 L2
ENSG00000006555 TTC22 844676 sc-eQTL 1.65e-01 -0.121 0.0873 0.466 CD4_CTL L2
ENSG00000162402 USP24 430635 sc-eQTL 8.79e-01 -0.013 0.0853 0.466 CD4_CTL L2
ENSG00000243725 TTC4 930138 sc-eQTL 6.78e-01 0.0396 0.0954 0.466 CD4_CTL L2
ENSG00000006555 TTC22 844676 sc-eQTL 3.02e-01 -0.0812 0.0786 0.47 CD4_Naive L2
ENSG00000162402 USP24 430635 sc-eQTL 6.66e-01 0.0224 0.0517 0.47 CD4_Naive L2
ENSG00000243725 TTC4 930138 sc-eQTL 5.71e-01 0.0447 0.0788 0.47 CD4_Naive L2
ENSG00000006555 TTC22 844676 sc-eQTL 5.18e-01 0.0533 0.0822 0.47 CD4_TCM L2
ENSG00000162402 USP24 430635 sc-eQTL 4.78e-01 -0.0438 0.0616 0.47 CD4_TCM L2
ENSG00000243725 TTC4 930138 sc-eQTL 9.39e-01 -0.00679 0.0889 0.47 CD4_TCM L2
ENSG00000006555 TTC22 844676 sc-eQTL 7.07e-01 0.0358 0.0949 0.47 CD4_TEM L2
ENSG00000162402 USP24 430635 sc-eQTL 8.97e-01 0.00907 0.07 0.47 CD4_TEM L2
ENSG00000243725 TTC4 930138 sc-eQTL 1.84e-01 -0.123 0.0921 0.47 CD4_TEM L2
ENSG00000006555 TTC22 844676 sc-eQTL 5.11e-01 -0.0502 0.0764 0.47 CD8_CTL L2
ENSG00000162402 USP24 430635 sc-eQTL 5.48e-01 -0.0356 0.0592 0.47 CD8_CTL L2
ENSG00000243725 TTC4 930138 sc-eQTL 3.92e-01 0.076 0.0886 0.47 CD8_CTL L2
ENSG00000006555 TTC22 844676 sc-eQTL 7.63e-01 -0.0256 0.0848 0.47 CD8_Naive L2
ENSG00000162402 USP24 430635 sc-eQTL 6.53e-01 -0.0279 0.0619 0.47 CD8_Naive L2
ENSG00000243725 TTC4 930138 sc-eQTL 7.93e-01 0.0238 0.0906 0.47 CD8_Naive L2
ENSG00000006555 TTC22 844676 sc-eQTL 2.29e-01 0.111 0.0923 0.472 CD8_TCM L2
ENSG00000162402 USP24 430635 sc-eQTL 1.26e-01 0.12 0.0777 0.472 CD8_TCM L2
ENSG00000243725 TTC4 930138 sc-eQTL 4.26e-01 0.0758 0.0949 0.472 CD8_TCM L2
ENSG00000006555 TTC22 844676 sc-eQTL 9.93e-01 -0.000799 0.0912 0.477 CD8_TEM L2
ENSG00000162402 USP24 430635 sc-eQTL 8.56e-01 -0.0169 0.093 0.477 CD8_TEM L2
ENSG00000243725 TTC4 930138 sc-eQTL 8.27e-01 0.0207 0.0945 0.477 CD8_TEM L2
ENSG00000006555 TTC22 844676 sc-eQTL 5.68e-01 0.047 0.0822 0.468 MAIT L2
ENSG00000116133 DHCR24 758804 sc-eQTL 4.65e-01 -0.0445 0.0608 0.468 MAIT L2
ENSG00000162402 USP24 430635 sc-eQTL 4.40e-01 -0.0572 0.074 0.468 MAIT L2
ENSG00000243725 TTC4 930138 sc-eQTL 2.62e-01 0.096 0.0853 0.468 MAIT L2
ENSG00000006555 TTC22 844676 sc-eQTL 1.67e-01 -0.128 0.0921 0.469 NK_CD56bright L2
ENSG00000116133 DHCR24 758804 sc-eQTL 9.36e-01 0.00659 0.0818 0.469 NK_CD56bright L2
ENSG00000162398 LEXM 839936 sc-eQTL 8.07e-01 0.0205 0.0838 0.469 NK_CD56bright L2
ENSG00000162402 USP24 430635 sc-eQTL 6.44e-01 0.0334 0.0721 0.469 NK_CD56bright L2
ENSG00000243725 TTC4 930138 sc-eQTL 2.32e-02 0.205 0.0898 0.469 NK_CD56bright L2
ENSG00000006555 TTC22 844676 sc-eQTL 5.30e-01 0.0482 0.0766 0.47 NK_CD56dim L2
ENSG00000116133 DHCR24 758804 sc-eQTL 2.46e-01 -0.0927 0.0797 0.47 NK_CD56dim L2
ENSG00000162398 LEXM 839936 sc-eQTL 3.68e-02 -0.164 0.0778 0.47 NK_CD56dim L2
ENSG00000162402 USP24 430635 sc-eQTL 5.28e-02 0.0965 0.0495 0.47 NK_CD56dim L2
ENSG00000243725 TTC4 930138 sc-eQTL 8.84e-01 0.0125 0.0855 0.47 NK_CD56dim L2
ENSG00000006555 TTC22 844676 sc-eQTL 7.78e-01 0.0258 0.0915 0.466 NK_HLA L2
ENSG00000116133 DHCR24 758804 sc-eQTL 2.52e-02 -0.199 0.0881 0.466 NK_HLA L2
ENSG00000162398 LEXM 839936 sc-eQTL 1.05e-01 -0.14 0.0861 0.466 NK_HLA L2
ENSG00000162402 USP24 430635 sc-eQTL 8.75e-01 -0.01 0.0636 0.466 NK_HLA L2
ENSG00000243725 TTC4 930138 sc-eQTL 5.14e-01 0.062 0.0949 0.466 NK_HLA L2
ENSG00000006555 TTC22 844676 sc-eQTL 2.64e-01 0.0923 0.0824 0.47 NK_cytokine L2
ENSG00000116133 DHCR24 758804 sc-eQTL 9.27e-01 0.00767 0.0836 0.47 NK_cytokine L2
ENSG00000162398 LEXM 839936 sc-eQTL 6.25e-01 0.0427 0.0871 0.47 NK_cytokine L2
ENSG00000162402 USP24 430635 sc-eQTL 9.10e-02 0.1 0.059 0.47 NK_cytokine L2
ENSG00000243725 TTC4 930138 sc-eQTL 6.51e-01 -0.0399 0.0881 0.47 NK_cytokine L2
ENSG00000006555 TTC22 844676 sc-eQTL 9.86e-01 0.0019 0.105 0.478 PB L2
ENSG00000116133 DHCR24 758804 sc-eQTL 3.04e-01 0.096 0.0928 0.478 PB L2
ENSG00000162402 USP24 430635 sc-eQTL 6.93e-01 -0.0447 0.113 0.478 PB L2
ENSG00000162407 PLPP3 -999302 sc-eQTL 6.73e-01 0.0432 0.102 0.478 PB L2
ENSG00000243725 TTC4 930138 sc-eQTL 1.91e-01 -0.143 0.109 0.478 PB L2
ENSG00000006555 TTC22 844676 sc-eQTL 7.98e-01 -0.0218 0.0853 0.472 Pro_T L2
ENSG00000116133 DHCR24 758804 sc-eQTL 3.14e-01 -0.0731 0.0723 0.472 Pro_T L2
ENSG00000162402 USP24 430635 sc-eQTL 9.67e-01 -0.00339 0.0823 0.472 Pro_T L2
ENSG00000243725 TTC4 930138 sc-eQTL 6.24e-01 -0.0443 0.0903 0.472 Pro_T L2
ENSG00000006555 TTC22 844676 sc-eQTL 7.81e-01 -0.0235 0.0847 0.47 Treg L2
ENSG00000162402 USP24 430635 sc-eQTL 5.52e-01 -0.0449 0.0754 0.47 Treg L2
ENSG00000243725 TTC4 930138 sc-eQTL 5.59e-01 0.0556 0.095 0.47 Treg L2
ENSG00000116133 DHCR24 758804 sc-eQTL 4.69e-01 0.0542 0.0748 0.466 cDC L2
ENSG00000162402 USP24 430635 sc-eQTL 4.61e-01 0.0681 0.0921 0.466 cDC L2
ENSG00000243725 TTC4 930138 sc-eQTL 9.72e-01 0.00334 0.0946 0.466 cDC L2
ENSG00000116133 DHCR24 758804 sc-eQTL 5.61e-01 0.0314 0.0539 0.47 cMono_IL1B L2
ENSG00000162402 USP24 430635 sc-eQTL 2.24e-01 0.0741 0.0608 0.47 cMono_IL1B L2
ENSG00000243725 TTC4 930138 sc-eQTL 1.48e-01 0.135 0.0928 0.47 cMono_IL1B L2
ENSG00000116133 DHCR24 758804 sc-eQTL 4.91e-01 0.0347 0.0502 0.47 cMono_S100A L2
ENSG00000162402 USP24 430635 sc-eQTL 1.54e-01 -0.106 0.0742 0.47 cMono_S100A L2
ENSG00000243725 TTC4 930138 sc-eQTL 3.15e-01 -0.0938 0.0931 0.47 cMono_S100A L2
ENSG00000006555 TTC22 844676 sc-eQTL 2.03e-03 0.26 0.0828 0.476 gdT L2
ENSG00000116133 DHCR24 758804 sc-eQTL 7.07e-01 0.0359 0.0954 0.476 gdT L2
ENSG00000162402 USP24 430635 sc-eQTL 9.25e-02 0.154 0.0908 0.476 gdT L2
ENSG00000243725 TTC4 930138 sc-eQTL 4.30e-01 0.0849 0.107 0.476 gdT L2
ENSG00000116133 DHCR24 758804 sc-eQTL 8.89e-01 -0.00945 0.0679 0.471 intMono L2
ENSG00000162402 USP24 430635 sc-eQTL 6.02e-01 -0.0452 0.0865 0.471 intMono L2
ENSG00000243725 TTC4 930138 sc-eQTL 7.25e-01 0.0324 0.0921 0.471 intMono L2
ENSG00000116133 DHCR24 758804 sc-eQTL 4.82e-01 0.0485 0.0687 0.475 ncMono L2
ENSG00000162402 USP24 430635 sc-eQTL 9.69e-01 -0.00302 0.0776 0.475 ncMono L2
ENSG00000243725 TTC4 930138 sc-eQTL 9.86e-02 0.151 0.0912 0.475 ncMono L2
ENSG00000116133 DHCR24 758804 sc-eQTL 9.98e-01 0.000254 0.0819 0.469 pDC L2
ENSG00000162402 USP24 430635 sc-eQTL 9.81e-01 0.00157 0.0657 0.469 pDC L2
ENSG00000243725 TTC4 930138 sc-eQTL 1.61e-01 -0.145 0.103 0.469 pDC L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000006555 TTC22 844676 sc-eQTL 9.31e-01 -0.00751 0.0872 0.47 B_Memory LOneK1K
ENSG00000116133 DHCR24 758804 sc-eQTL 4.40e-01 0.0677 0.0874 0.47 B_Memory LOneK1K
ENSG00000162402 USP24 430635 sc-eQTL 7.06e-01 0.0236 0.0625 0.47 B_Memory LOneK1K
ENSG00000162407 PLPP3 -999302 sc-eQTL 8.88e-01 0.0109 0.0779 0.47 B_Memory LOneK1K
ENSG00000243725 TTC4 930138 sc-eQTL 7.32e-02 -0.154 0.0856 0.47 B_Memory LOneK1K
ENSG00000006555 TTC22 844676 sc-eQTL 1.28e-01 0.139 0.0906 0.47 B_Naive LOneK1K
ENSG00000116133 DHCR24 758804 sc-eQTL 4.95e-01 -0.0561 0.082 0.47 B_Naive LOneK1K
ENSG00000162402 USP24 430635 sc-eQTL 6.74e-01 -0.0245 0.0581 0.47 B_Naive LOneK1K
ENSG00000162407 PLPP3 -999302 sc-eQTL 8.19e-01 -0.0208 0.0907 0.47 B_Naive LOneK1K
ENSG00000243725 TTC4 930138 sc-eQTL 4.46e-01 0.066 0.0864 0.47 B_Naive LOneK1K
ENSG00000116133 DHCR24 758804 sc-eQTL 5.51e-01 0.0311 0.052 0.47 CD14_Mono LOneK1K
ENSG00000162402 USP24 430635 sc-eQTL 8.90e-01 0.00787 0.0569 0.47 CD14_Mono LOneK1K
ENSG00000243725 TTC4 930138 sc-eQTL 5.15e-01 0.0615 0.0943 0.47 CD14_Mono LOneK1K
ENSG00000116133 DHCR24 758804 sc-eQTL 5.90e-01 0.0347 0.0643 0.468 CD16_Mono LOneK1K
ENSG00000162402 USP24 430635 sc-eQTL 7.30e-01 -0.0251 0.0724 0.468 CD16_Mono LOneK1K
ENSG00000243725 TTC4 930138 sc-eQTL 3.62e-01 0.0828 0.0907 0.468 CD16_Mono LOneK1K
ENSG00000006555 TTC22 844676 sc-eQTL 1.73e-01 0.102 0.0743 0.47 NK_CD56dim LOneK1K
ENSG00000116133 DHCR24 758804 sc-eQTL 2.69e-01 -0.0862 0.0778 0.47 NK_CD56dim LOneK1K
ENSG00000162398 LEXM 839936 sc-eQTL 1.48e-01 -0.106 0.0729 0.47 NK_CD56dim LOneK1K
ENSG00000162402 USP24 430635 sc-eQTL 3.11e-02 0.0997 0.046 0.47 NK_CD56dim LOneK1K
ENSG00000243725 TTC4 930138 sc-eQTL 8.29e-01 0.0178 0.0827 0.47 NK_CD56dim LOneK1K

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000234810 AL603840.1 316711 eQTL 0.00257 0.0915 0.0303 0.0 0.0 0.473

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000234810 AL603840.1 316711 1.43e-06 3.76e-06 2.92e-07 1.67e-06 3.68e-07 6.43e-07 2.48e-06 1.07e-06 4.66e-06 2.35e-06 1.19e-05 2.48e-06 7.26e-06 1.34e-06 8.73e-07 1.64e-06 9.55e-07 2.18e-06 4.54e-07 6.33e-07 6.34e-07 3.54e-06 1.95e-06 6.23e-07 4.87e-06 2.4e-07 1.15e-06 1.46e-06 2.66e-06 2.94e-06 5.51e-06 4.25e-08 1.31e-07 6.99e-07 7.57e-07 3.38e-07 1.06e-07 1.23e-07 1.46e-07 2.29e-07 4.4e-08 3.87e-06 6.21e-08 6.51e-08 3.15e-07 3.29e-07 1.46e-07 5.73e-08 4.68e-08