Genes within 1Mb (chr1:55643904:T:TA):

View on , UCSC , GTEx , gnomAD


Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000006555 TTC22 842581 sc-eQTL 9.27e-01 -0.008 0.0876 0.677 B L1
ENSG00000116133 DHCR24 756709 sc-eQTL 3.97e-01 0.0702 0.0827 0.677 B L1
ENSG00000162402 USP24 428540 sc-eQTL 7.76e-01 0.0144 0.0505 0.677 B L1
ENSG00000243725 TTC4 928043 sc-eQTL 6.98e-01 -0.0329 0.0847 0.677 B L1
ENSG00000006555 TTC22 842581 sc-eQTL 5.86e-01 0.0374 0.0684 0.677 CD4T L1
ENSG00000162402 USP24 428540 sc-eQTL 1.02e-01 -0.0797 0.0485 0.677 CD4T L1
ENSG00000243725 TTC4 928043 sc-eQTL 4.25e-01 -0.0586 0.0733 0.677 CD4T L1
ENSG00000006555 TTC22 842581 sc-eQTL 3.64e-01 -0.0542 0.0595 0.677 CD8T L1
ENSG00000162402 USP24 428540 sc-eQTL 2.95e-01 -0.0517 0.0492 0.677 CD8T L1
ENSG00000243725 TTC4 928043 sc-eQTL 6.60e-01 -0.0377 0.0855 0.677 CD8T L1
ENSG00000116133 DHCR24 756709 sc-eQTL 6.39e-04 0.268 0.0771 0.678 DC L1
ENSG00000162402 USP24 428540 sc-eQTL 8.92e-01 -0.00662 0.0486 0.678 DC L1
ENSG00000243725 TTC4 928043 sc-eQTL 7.75e-01 -0.0271 0.0945 0.678 DC L1
ENSG00000116133 DHCR24 756709 sc-eQTL 1.85e-01 0.0767 0.0577 0.677 Mono L1
ENSG00000162402 USP24 428540 sc-eQTL 2.72e-01 0.0583 0.0529 0.677 Mono L1
ENSG00000243725 TTC4 928043 sc-eQTL 7.90e-01 0.0249 0.0934 0.677 Mono L1
ENSG00000006555 TTC22 842581 sc-eQTL 7.72e-01 -0.0229 0.0788 0.678 NK L1
ENSG00000116133 DHCR24 756709 sc-eQTL 7.26e-01 -0.028 0.0796 0.678 NK L1
ENSG00000162398 LEXM 837841 sc-eQTL 6.09e-01 -0.0381 0.0744 0.678 NK L1
ENSG00000162402 USP24 428540 sc-eQTL 9.48e-01 0.00293 0.0451 0.678 NK L1
ENSG00000243725 TTC4 928043 sc-eQTL 3.72e-01 -0.0761 0.0852 0.678 NK L1
ENSG00000006555 TTC22 842581 sc-eQTL 7.53e-01 -0.0223 0.0707 0.677 Other_T L1
ENSG00000116133 DHCR24 756709 sc-eQTL 6.72e-01 0.0232 0.0548 0.677 Other_T L1
ENSG00000162402 USP24 428540 sc-eQTL 7.07e-01 -0.0245 0.0649 0.677 Other_T L1
ENSG00000243725 TTC4 928043 sc-eQTL 9.25e-01 0.00831 0.0884 0.677 Other_T L1
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000006555 TTC22 842581 sc-eQTL 7.95e-01 -0.0188 0.0723 0.663 B_Activated L2
ENSG00000116133 DHCR24 756709 sc-eQTL 6.47e-01 0.039 0.0849 0.663 B_Activated L2
ENSG00000162402 USP24 428540 sc-eQTL 7.57e-01 -0.0287 0.0925 0.663 B_Activated L2
ENSG00000243725 TTC4 928043 sc-eQTL 6.85e-02 -0.161 0.0878 0.663 B_Activated L2
ENSG00000006555 TTC22 842581 sc-eQTL 9.42e-01 0.00686 0.0948 0.678 B_Intermediate L2
ENSG00000116133 DHCR24 756709 sc-eQTL 8.74e-01 0.014 0.088 0.678 B_Intermediate L2
ENSG00000162402 USP24 428540 sc-eQTL 1.33e-01 0.104 0.0691 0.678 B_Intermediate L2
ENSG00000243725 TTC4 928043 sc-eQTL 1.92e-01 0.117 0.089 0.678 B_Intermediate L2
ENSG00000006555 TTC22 842581 sc-eQTL 5.07e-01 -0.0613 0.0923 0.679 B_Memory L2
ENSG00000116133 DHCR24 756709 sc-eQTL 4.98e-01 -0.0622 0.0916 0.679 B_Memory L2
ENSG00000162402 USP24 428540 sc-eQTL 3.72e-01 -0.0675 0.0754 0.679 B_Memory L2
ENSG00000243725 TTC4 928043 sc-eQTL 1.40e-01 -0.143 0.0964 0.679 B_Memory L2
ENSG00000006555 TTC22 842581 sc-eQTL 8.74e-01 0.0148 0.093 0.677 B_Naive1 L2
ENSG00000116133 DHCR24 756709 sc-eQTL 7.69e-01 0.0256 0.0872 0.677 B_Naive1 L2
ENSG00000162402 USP24 428540 sc-eQTL 9.87e-01 0.00101 0.0625 0.677 B_Naive1 L2
ENSG00000243725 TTC4 928043 sc-eQTL 3.40e-01 0.0813 0.085 0.677 B_Naive1 L2
ENSG00000006555 TTC22 842581 sc-eQTL 9.36e-01 -0.00758 0.0941 0.678 B_Naive2 L2
ENSG00000116133 DHCR24 756709 sc-eQTL 1.85e-01 0.108 0.0816 0.678 B_Naive2 L2
ENSG00000162402 USP24 428540 sc-eQTL 6.32e-01 -0.033 0.0687 0.678 B_Naive2 L2
ENSG00000243725 TTC4 928043 sc-eQTL 5.63e-01 0.0583 0.101 0.678 B_Naive2 L2
ENSG00000006555 TTC22 842581 sc-eQTL 4.46e-02 -0.187 0.0923 0.68 CD4_CTL L2
ENSG00000162402 USP24 428540 sc-eQTL 5.43e-01 -0.0552 0.0906 0.68 CD4_CTL L2
ENSG00000243725 TTC4 928043 sc-eQTL 5.01e-01 0.0683 0.101 0.68 CD4_CTL L2
ENSG00000006555 TTC22 842581 sc-eQTL 9.27e-01 0.00741 0.0802 0.677 CD4_Naive L2
ENSG00000162402 USP24 428540 sc-eQTL 3.89e-01 -0.0454 0.0526 0.677 CD4_Naive L2
ENSG00000243725 TTC4 928043 sc-eQTL 5.02e-01 -0.0539 0.0802 0.677 CD4_Naive L2
ENSG00000006555 TTC22 842581 sc-eQTL 5.51e-01 0.0505 0.0845 0.677 CD4_TCM L2
ENSG00000162402 USP24 428540 sc-eQTL 1.30e-01 -0.0957 0.0631 0.677 CD4_TCM L2
ENSG00000243725 TTC4 928043 sc-eQTL 4.54e-01 -0.0684 0.0912 0.677 CD4_TCM L2
ENSG00000006555 TTC22 842581 sc-eQTL 9.12e-01 0.0109 0.098 0.677 CD4_TEM L2
ENSG00000162402 USP24 428540 sc-eQTL 7.43e-01 -0.0237 0.0723 0.677 CD4_TEM L2
ENSG00000243725 TTC4 928043 sc-eQTL 9.07e-02 -0.161 0.0949 0.677 CD4_TEM L2
ENSG00000006555 TTC22 842581 sc-eQTL 1.23e-01 -0.12 0.0774 0.677 CD8_CTL L2
ENSG00000162402 USP24 428540 sc-eQTL 4.49e-01 -0.0457 0.0603 0.677 CD8_CTL L2
ENSG00000243725 TTC4 928043 sc-eQTL 8.96e-01 -0.0118 0.0903 0.677 CD8_CTL L2
ENSG00000006555 TTC22 842581 sc-eQTL 3.71e-01 0.0781 0.0872 0.677 CD8_Naive L2
ENSG00000162402 USP24 428540 sc-eQTL 2.40e-01 -0.0749 0.0636 0.677 CD8_Naive L2
ENSG00000243725 TTC4 928043 sc-eQTL 7.96e-01 -0.0242 0.0933 0.677 CD8_Naive L2
ENSG00000006555 TTC22 842581 sc-eQTL 2.74e-01 0.107 0.0976 0.683 CD8_TCM L2
ENSG00000162402 USP24 428540 sc-eQTL 8.69e-01 0.0137 0.0827 0.683 CD8_TCM L2
ENSG00000243725 TTC4 928043 sc-eQTL 1.98e-01 0.129 0.1 0.683 CD8_TCM L2
ENSG00000006555 TTC22 842581 sc-eQTL 8.37e-01 -0.019 0.0926 0.683 CD8_TEM L2
ENSG00000162402 USP24 428540 sc-eQTL 3.12e-01 -0.0955 0.0942 0.683 CD8_TEM L2
ENSG00000243725 TTC4 928043 sc-eQTL 7.10e-01 -0.0357 0.0959 0.683 CD8_TEM L2
ENSG00000006555 TTC22 842581 sc-eQTL 6.19e-01 0.0425 0.0855 0.677 MAIT L2
ENSG00000116133 DHCR24 756709 sc-eQTL 8.62e-01 -0.011 0.0633 0.677 MAIT L2
ENSG00000162402 USP24 428540 sc-eQTL 4.09e-01 -0.0637 0.0769 0.677 MAIT L2
ENSG00000243725 TTC4 928043 sc-eQTL 3.59e-01 0.0817 0.0888 0.677 MAIT L2
ENSG00000006555 TTC22 842581 sc-eQTL 5.25e-02 -0.188 0.0963 0.678 NK_CD56bright L2
ENSG00000116133 DHCR24 756709 sc-eQTL 1.68e-01 -0.118 0.0855 0.678 NK_CD56bright L2
ENSG00000162398 LEXM 837841 sc-eQTL 8.47e-01 0.017 0.088 0.678 NK_CD56bright L2
ENSG00000162402 USP24 428540 sc-eQTL 3.06e-01 -0.0775 0.0755 0.678 NK_CD56bright L2
ENSG00000243725 TTC4 928043 sc-eQTL 9.98e-01 -0.000288 0.0955 0.678 NK_CD56bright L2
ENSG00000006555 TTC22 842581 sc-eQTL 8.42e-01 -0.0159 0.0797 0.679 NK_CD56dim L2
ENSG00000116133 DHCR24 756709 sc-eQTL 8.22e-01 0.0188 0.0832 0.679 NK_CD56dim L2
ENSG00000162398 LEXM 837841 sc-eQTL 7.07e-01 -0.0307 0.0818 0.679 NK_CD56dim L2
ENSG00000162402 USP24 428540 sc-eQTL 7.29e-01 0.018 0.052 0.679 NK_CD56dim L2
ENSG00000243725 TTC4 928043 sc-eQTL 8.41e-01 0.0179 0.089 0.679 NK_CD56dim L2
ENSG00000006555 TTC22 842581 sc-eQTL 8.57e-01 0.0176 0.0979 0.683 NK_HLA L2
ENSG00000116133 DHCR24 756709 sc-eQTL 3.65e-01 -0.0864 0.0953 0.683 NK_HLA L2
ENSG00000162398 LEXM 837841 sc-eQTL 5.25e-01 -0.059 0.0927 0.683 NK_HLA L2
ENSG00000162402 USP24 428540 sc-eQTL 7.82e-01 -0.0189 0.0681 0.683 NK_HLA L2
ENSG00000243725 TTC4 928043 sc-eQTL 7.68e-01 0.03 0.102 0.683 NK_HLA L2
ENSG00000006555 TTC22 842581 sc-eQTL 9.21e-01 -0.00845 0.0847 0.679 NK_cytokine L2
ENSG00000116133 DHCR24 756709 sc-eQTL 4.75e-01 -0.0612 0.0855 0.679 NK_cytokine L2
ENSG00000162398 LEXM 837841 sc-eQTL 3.43e-01 -0.0846 0.0891 0.679 NK_cytokine L2
ENSG00000162402 USP24 428540 sc-eQTL 9.42e-01 -0.00445 0.0609 0.679 NK_cytokine L2
ENSG00000243725 TTC4 928043 sc-eQTL 1.82e-02 -0.212 0.089 0.679 NK_cytokine L2
ENSG00000006555 TTC22 842581 sc-eQTL 7.97e-01 0.028 0.108 0.674 PB L2
ENSG00000116133 DHCR24 756709 sc-eQTL 2.76e-02 0.21 0.0941 0.674 PB L2
ENSG00000162402 USP24 428540 sc-eQTL 5.64e-01 0.0675 0.117 0.674 PB L2
ENSG00000243725 TTC4 928043 sc-eQTL 4.08e-01 -0.0936 0.113 0.674 PB L2
ENSG00000006555 TTC22 842581 sc-eQTL 5.03e-01 0.0583 0.087 0.676 Pro_T L2
ENSG00000116133 DHCR24 756709 sc-eQTL 2.53e-01 0.0846 0.0738 0.676 Pro_T L2
ENSG00000162402 USP24 428540 sc-eQTL 8.22e-01 0.0189 0.084 0.676 Pro_T L2
ENSG00000243725 TTC4 928043 sc-eQTL 8.35e-01 -0.0193 0.0922 0.676 Pro_T L2
ENSG00000006555 TTC22 842581 sc-eQTL 1.67e-01 0.12 0.0862 0.677 Treg L2
ENSG00000162402 USP24 428540 sc-eQTL 7.07e-01 0.029 0.0771 0.677 Treg L2
ENSG00000243725 TTC4 928043 sc-eQTL 8.99e-01 -0.0123 0.0972 0.677 Treg L2
ENSG00000116133 DHCR24 756709 sc-eQTL 1.74e-01 0.106 0.0779 0.676 cDC L2
ENSG00000162402 USP24 428540 sc-eQTL 8.23e-01 0.0216 0.0964 0.676 cDC L2
ENSG00000243725 TTC4 928043 sc-eQTL 3.14e-01 0.0997 0.0986 0.676 cDC L2
ENSG00000116133 DHCR24 756709 sc-eQTL 1.86e-01 0.0737 0.0556 0.677 cMono_IL1B L2
ENSG00000162402 USP24 428540 sc-eQTL 6.31e-02 0.117 0.0627 0.677 cMono_IL1B L2
ENSG00000243725 TTC4 928043 sc-eQTL 7.54e-02 0.171 0.0959 0.677 cMono_IL1B L2
ENSG00000116133 DHCR24 756709 sc-eQTL 2.87e-01 0.0556 0.0521 0.677 cMono_S100A L2
ENSG00000162402 USP24 428540 sc-eQTL 7.43e-01 0.0255 0.0774 0.677 cMono_S100A L2
ENSG00000243725 TTC4 928043 sc-eQTL 8.84e-02 -0.165 0.0963 0.677 cMono_S100A L2
ENSG00000006555 TTC22 842581 sc-eQTL 4.04e-01 0.0767 0.0917 0.697 gdT L2
ENSG00000116133 DHCR24 756709 sc-eQTL 7.79e-01 0.0288 0.102 0.697 gdT L2
ENSG00000162402 USP24 428540 sc-eQTL 1.77e-01 0.133 0.0978 0.697 gdT L2
ENSG00000243725 TTC4 928043 sc-eQTL 9.69e-01 -0.00451 0.115 0.697 gdT L2
ENSG00000116133 DHCR24 756709 sc-eQTL 4.10e-01 0.0584 0.0708 0.682 intMono L2
ENSG00000162402 USP24 428540 sc-eQTL 5.51e-01 -0.054 0.0903 0.682 intMono L2
ENSG00000243725 TTC4 928043 sc-eQTL 8.70e-01 -0.0158 0.0963 0.682 intMono L2
ENSG00000116133 DHCR24 756709 sc-eQTL 9.55e-01 0.00401 0.0706 0.686 ncMono L2
ENSG00000162402 USP24 428540 sc-eQTL 1.88e-01 -0.105 0.0792 0.686 ncMono L2
ENSG00000243725 TTC4 928043 sc-eQTL 1.20e-01 0.146 0.0936 0.686 ncMono L2
ENSG00000116133 DHCR24 756709 sc-eQTL 1.93e-03 0.248 0.0786 0.675 pDC L2
ENSG00000162402 USP24 428540 sc-eQTL 1.21e-01 -0.101 0.0646 0.675 pDC L2
ENSG00000243725 TTC4 928043 sc-eQTL 7.19e-01 0.037 0.103 0.675 pDC L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000006555 TTC22 842581 sc-eQTL 6.84e-01 -0.0368 0.0902 0.677 B_Memory LOneK1K
ENSG00000116133 DHCR24 756709 sc-eQTL 5.27e-01 -0.0573 0.0905 0.677 B_Memory LOneK1K
ENSG00000162402 USP24 428540 sc-eQTL 7.78e-01 0.0182 0.0647 0.677 B_Memory LOneK1K
ENSG00000243725 TTC4 928043 sc-eQTL 6.07e-01 -0.0459 0.0892 0.677 B_Memory LOneK1K
ENSG00000006555 TTC22 842581 sc-eQTL 9.06e-01 0.0111 0.0943 0.677 B_Naive LOneK1K
ENSG00000116133 DHCR24 756709 sc-eQTL 2.99e-01 0.0882 0.0847 0.677 B_Naive LOneK1K
ENSG00000162402 USP24 428540 sc-eQTL 9.04e-01 -0.00726 0.0601 0.677 B_Naive LOneK1K
ENSG00000243725 TTC4 928043 sc-eQTL 4.20e-01 0.0722 0.0894 0.677 B_Naive LOneK1K
ENSG00000116133 DHCR24 756709 sc-eQTL 1.47e-01 0.0782 0.0537 0.677 CD14_Mono LOneK1K
ENSG00000162402 USP24 428540 sc-eQTL 9.63e-02 0.0979 0.0586 0.677 CD14_Mono LOneK1K
ENSG00000243725 TTC4 928043 sc-eQTL 4.75e-01 0.0699 0.0977 0.677 CD14_Mono LOneK1K
ENSG00000116133 DHCR24 756709 sc-eQTL 3.11e-01 0.068 0.067 0.677 CD16_Mono LOneK1K
ENSG00000162402 USP24 428540 sc-eQTL 3.67e-01 -0.0682 0.0755 0.677 CD16_Mono LOneK1K
ENSG00000243725 TTC4 928043 sc-eQTL 3.22e-01 0.0938 0.0946 0.677 CD16_Mono LOneK1K
ENSG00000006555 TTC22 842581 sc-eQTL 8.55e-01 0.0141 0.0772 0.679 NK_CD56dim LOneK1K
ENSG00000116133 DHCR24 756709 sc-eQTL 7.48e-01 -0.0259 0.0807 0.679 NK_CD56dim LOneK1K
ENSG00000162398 LEXM 837841 sc-eQTL 3.67e-01 -0.0684 0.0757 0.679 NK_CD56dim LOneK1K
ENSG00000162402 USP24 428540 sc-eQTL 9.78e-01 0.00133 0.0481 0.679 NK_CD56dim LOneK1K
ENSG00000243725 TTC4 928043 sc-eQTL 2.74e-01 -0.0936 0.0854 0.679 NK_CD56dim LOneK1K


Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000162396 PARS2 879381 eQTL 0.021 0.0662 0.0286 0.00151 0.0 0.299
ENSG00000234810 AL603840.1 314616 eQTL 0.0105 0.0824 0.0321 0.0 0.0 0.299


Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina