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Genes within 1Mb (chr1:55632003:C:T):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000006555 TTC22 830680 sc-eQTL 5.90e-01 0.0548 0.102 0.188 B L1
ENSG00000116133 DHCR24 744808 sc-eQTL 2.68e-01 -0.107 0.096 0.188 B L1
ENSG00000162402 USP24 416639 sc-eQTL 4.54e-02 -0.117 0.0582 0.188 B L1
ENSG00000243725 TTC4 916142 sc-eQTL 7.77e-01 0.0279 0.0984 0.188 B L1
ENSG00000006555 TTC22 830680 sc-eQTL 6.01e-01 0.0415 0.0792 0.188 CD4T L1
ENSG00000162402 USP24 416639 sc-eQTL 5.75e-01 0.0316 0.0564 0.188 CD4T L1
ENSG00000243725 TTC4 916142 sc-eQTL 1.91e-01 -0.111 0.0846 0.188 CD4T L1
ENSG00000006555 TTC22 830680 sc-eQTL 2.91e-01 0.0727 0.0687 0.188 CD8T L1
ENSG00000162402 USP24 416639 sc-eQTL 2.62e-01 -0.0639 0.0568 0.188 CD8T L1
ENSG00000243725 TTC4 916142 sc-eQTL 6.84e-02 0.18 0.0981 0.188 CD8T L1
ENSG00000116133 DHCR24 744808 sc-eQTL 6.54e-01 0.0412 0.0917 0.189 DC L1
ENSG00000162402 USP24 416639 sc-eQTL 8.23e-01 -0.0126 0.0562 0.189 DC L1
ENSG00000243725 TTC4 916142 sc-eQTL 5.87e-04 0.371 0.106 0.189 DC L1
ENSG00000116133 DHCR24 744808 sc-eQTL 8.04e-02 0.115 0.0656 0.188 Mono L1
ENSG00000162402 USP24 416639 sc-eQTL 1.82e-01 0.0807 0.0602 0.188 Mono L1
ENSG00000243725 TTC4 916142 sc-eQTL 5.13e-01 -0.0696 0.106 0.188 Mono L1
ENSG00000006555 TTC22 830680 sc-eQTL 7.17e-02 -0.163 0.09 0.189 NK L1
ENSG00000116133 DHCR24 744808 sc-eQTL 2.02e-01 0.117 0.0912 0.189 NK L1
ENSG00000162398 LEXM 825940 sc-eQTL 5.26e-01 -0.0544 0.0855 0.189 NK L1
ENSG00000162402 USP24 416639 sc-eQTL 8.61e-01 0.00913 0.0519 0.189 NK L1
ENSG00000243725 TTC4 916142 sc-eQTL 3.22e-01 -0.0972 0.098 0.189 NK L1
ENSG00000006555 TTC22 830680 sc-eQTL 7.27e-01 0.0288 0.0824 0.188 Other_T L1
ENSG00000116133 DHCR24 744808 sc-eQTL 7.95e-02 0.112 0.0635 0.188 Other_T L1
ENSG00000162402 USP24 416639 sc-eQTL 1.91e-01 0.0991 0.0755 0.188 Other_T L1
ENSG00000243725 TTC4 916142 sc-eQTL 4.41e-01 0.0796 0.103 0.188 Other_T L1
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000006555 TTC22 830680 sc-eQTL 1.71e-01 0.121 0.0882 0.189 B_Activated L2
ENSG00000116133 DHCR24 744808 sc-eQTL 9.81e-01 0.00247 0.104 0.189 B_Activated L2
ENSG00000162402 USP24 416639 sc-eQTL 7.61e-01 -0.0345 0.113 0.189 B_Activated L2
ENSG00000243725 TTC4 916142 sc-eQTL 2.32e-01 -0.13 0.108 0.189 B_Activated L2
ENSG00000006555 TTC22 830680 sc-eQTL 5.13e-01 0.0723 0.11 0.189 B_Intermediate L2
ENSG00000116133 DHCR24 744808 sc-eQTL 7.57e-01 -0.0318 0.102 0.189 B_Intermediate L2
ENSG00000162402 USP24 416639 sc-eQTL 1.87e-01 -0.107 0.0805 0.189 B_Intermediate L2
ENSG00000243725 TTC4 916142 sc-eQTL 3.85e-01 0.0904 0.104 0.189 B_Intermediate L2
ENSG00000006555 TTC22 830680 sc-eQTL 7.62e-01 0.0318 0.105 0.188 B_Memory L2
ENSG00000116133 DHCR24 744808 sc-eQTL 1.89e-01 -0.137 0.104 0.188 B_Memory L2
ENSG00000162402 USP24 416639 sc-eQTL 1.91e-01 -0.112 0.0855 0.188 B_Memory L2
ENSG00000243725 TTC4 916142 sc-eQTL 4.12e-01 0.0903 0.11 0.188 B_Memory L2
ENSG00000006555 TTC22 830680 sc-eQTL 6.99e-01 -0.0422 0.109 0.188 B_Naive1 L2
ENSG00000116133 DHCR24 744808 sc-eQTL 3.67e-01 -0.0923 0.102 0.188 B_Naive1 L2
ENSG00000162402 USP24 416639 sc-eQTL 9.20e-01 0.00733 0.0733 0.188 B_Naive1 L2
ENSG00000243725 TTC4 916142 sc-eQTL 9.04e-01 -0.012 0.0999 0.188 B_Naive1 L2
ENSG00000006555 TTC22 830680 sc-eQTL 3.12e-01 0.112 0.11 0.187 B_Naive2 L2
ENSG00000116133 DHCR24 744808 sc-eQTL 3.49e-01 0.0902 0.0961 0.187 B_Naive2 L2
ENSG00000162402 USP24 416639 sc-eQTL 1.92e-01 -0.105 0.0805 0.187 B_Naive2 L2
ENSG00000243725 TTC4 916142 sc-eQTL 3.97e-01 -0.1 0.118 0.187 B_Naive2 L2
ENSG00000006555 TTC22 830680 sc-eQTL 4.25e-01 0.0828 0.104 0.193 CD4_CTL L2
ENSG00000162402 USP24 416639 sc-eQTL 6.67e-01 0.0434 0.101 0.193 CD4_CTL L2
ENSG00000243725 TTC4 916142 sc-eQTL 3.26e-02 -0.24 0.112 0.193 CD4_CTL L2
ENSG00000006555 TTC22 830680 sc-eQTL 6.07e-01 0.048 0.0932 0.188 CD4_Naive L2
ENSG00000162402 USP24 416639 sc-eQTL 9.90e-01 0.000792 0.0613 0.188 CD4_Naive L2
ENSG00000243725 TTC4 916142 sc-eQTL 4.16e-01 -0.076 0.0932 0.188 CD4_Naive L2
ENSG00000006555 TTC22 830680 sc-eQTL 7.79e-01 -0.0276 0.098 0.188 CD4_TCM L2
ENSG00000162402 USP24 416639 sc-eQTL 4.70e-01 0.0531 0.0734 0.188 CD4_TCM L2
ENSG00000243725 TTC4 916142 sc-eQTL 1.75e-02 -0.25 0.104 0.188 CD4_TCM L2
ENSG00000006555 TTC22 830680 sc-eQTL 8.23e-01 -0.0254 0.113 0.188 CD4_TEM L2
ENSG00000162402 USP24 416639 sc-eQTL 6.11e-01 -0.0425 0.0834 0.188 CD4_TEM L2
ENSG00000243725 TTC4 916142 sc-eQTL 1.26e-01 0.168 0.11 0.188 CD4_TEM L2
ENSG00000006555 TTC22 830680 sc-eQTL 6.97e-01 0.0353 0.0904 0.188 CD8_CTL L2
ENSG00000162402 USP24 416639 sc-eQTL 5.71e-01 -0.0398 0.0701 0.188 CD8_CTL L2
ENSG00000243725 TTC4 916142 sc-eQTL 9.26e-01 0.0098 0.105 0.188 CD8_CTL L2
ENSG00000006555 TTC22 830680 sc-eQTL 3.80e-01 0.0891 0.101 0.188 CD8_Naive L2
ENSG00000162402 USP24 416639 sc-eQTL 3.73e-01 0.0661 0.074 0.188 CD8_Naive L2
ENSG00000243725 TTC4 916142 sc-eQTL 8.80e-02 0.185 0.108 0.188 CD8_Naive L2
ENSG00000006555 TTC22 830680 sc-eQTL 5.28e-01 0.0701 0.111 0.192 CD8_TCM L2
ENSG00000162402 USP24 416639 sc-eQTL 6.48e-02 -0.172 0.0928 0.192 CD8_TCM L2
ENSG00000243725 TTC4 916142 sc-eQTL 9.59e-01 -0.00592 0.114 0.192 CD8_TCM L2
ENSG00000006555 TTC22 830680 sc-eQTL 4.06e-01 0.0924 0.111 0.183 CD8_TEM L2
ENSG00000162402 USP24 416639 sc-eQTL 3.93e-01 0.0969 0.113 0.183 CD8_TEM L2
ENSG00000243725 TTC4 916142 sc-eQTL 7.06e-01 0.0435 0.115 0.183 CD8_TEM L2
ENSG00000006555 TTC22 830680 sc-eQTL 5.94e-01 0.0526 0.0983 0.188 MAIT L2
ENSG00000116133 DHCR24 744808 sc-eQTL 1.55e-01 0.103 0.0725 0.188 MAIT L2
ENSG00000162402 USP24 416639 sc-eQTL 7.54e-01 0.0278 0.0886 0.188 MAIT L2
ENSG00000243725 TTC4 916142 sc-eQTL 6.13e-01 -0.0518 0.102 0.188 MAIT L2
ENSG00000006555 TTC22 830680 sc-eQTL 3.08e-01 -0.118 0.115 0.187 NK_CD56bright L2
ENSG00000116133 DHCR24 744808 sc-eQTL 8.23e-01 -0.0229 0.102 0.187 NK_CD56bright L2
ENSG00000162398 LEXM 825940 sc-eQTL 7.56e-01 0.0324 0.104 0.187 NK_CD56bright L2
ENSG00000162402 USP24 416639 sc-eQTL 9.77e-01 -0.00263 0.0899 0.187 NK_CD56bright L2
ENSG00000243725 TTC4 916142 sc-eQTL 5.33e-01 -0.0707 0.113 0.187 NK_CD56bright L2
ENSG00000006555 TTC22 830680 sc-eQTL 7.93e-01 -0.0242 0.092 0.19 NK_CD56dim L2
ENSG00000116133 DHCR24 744808 sc-eQTL 6.78e-02 0.175 0.0953 0.19 NK_CD56dim L2
ENSG00000162398 LEXM 825940 sc-eQTL 7.20e-01 -0.0338 0.0944 0.19 NK_CD56dim L2
ENSG00000162402 USP24 416639 sc-eQTL 9.77e-01 -0.00176 0.06 0.19 NK_CD56dim L2
ENSG00000243725 TTC4 916142 sc-eQTL 6.74e-01 -0.0433 0.103 0.19 NK_CD56dim L2
ENSG00000006555 TTC22 830680 sc-eQTL 4.52e-01 0.0843 0.112 0.192 NK_HLA L2
ENSG00000116133 DHCR24 744808 sc-eQTL 9.89e-02 0.18 0.108 0.192 NK_HLA L2
ENSG00000162398 LEXM 825940 sc-eQTL 3.07e-01 0.108 0.106 0.192 NK_HLA L2
ENSG00000162402 USP24 416639 sc-eQTL 5.53e-01 0.0462 0.0777 0.192 NK_HLA L2
ENSG00000243725 TTC4 916142 sc-eQTL 1.34e-01 -0.174 0.116 0.192 NK_HLA L2
ENSG00000006555 TTC22 830680 sc-eQTL 5.05e-02 -0.194 0.0987 0.19 NK_cytokine L2
ENSG00000116133 DHCR24 744808 sc-eQTL 9.10e-01 -0.0113 0.101 0.19 NK_cytokine L2
ENSG00000162398 LEXM 825940 sc-eQTL 4.44e-01 -0.0804 0.105 0.19 NK_cytokine L2
ENSG00000162402 USP24 416639 sc-eQTL 4.40e-01 -0.0553 0.0715 0.19 NK_cytokine L2
ENSG00000243725 TTC4 916142 sc-eQTL 4.51e-01 -0.0801 0.106 0.19 NK_cytokine L2
ENSG00000006555 TTC22 830680 sc-eQTL 6.58e-01 -0.0575 0.129 0.174 PB L2
ENSG00000116133 DHCR24 744808 sc-eQTL 4.74e-01 -0.0824 0.115 0.174 PB L2
ENSG00000162402 USP24 416639 sc-eQTL 2.60e-02 0.307 0.136 0.174 PB L2
ENSG00000243725 TTC4 916142 sc-eQTL 2.42e-01 0.158 0.134 0.174 PB L2
ENSG00000006555 TTC22 830680 sc-eQTL 6.18e-01 0.0515 0.103 0.189 Pro_T L2
ENSG00000116133 DHCR24 744808 sc-eQTL 2.56e-01 0.0995 0.0874 0.189 Pro_T L2
ENSG00000162402 USP24 416639 sc-eQTL 9.17e-01 -0.0104 0.0995 0.189 Pro_T L2
ENSG00000243725 TTC4 916142 sc-eQTL 4.04e-01 0.0913 0.109 0.189 Pro_T L2
ENSG00000006555 TTC22 830680 sc-eQTL 8.98e-01 0.0129 0.1 0.188 Treg L2
ENSG00000162402 USP24 416639 sc-eQTL 4.25e-01 -0.0711 0.0891 0.188 Treg L2
ENSG00000243725 TTC4 916142 sc-eQTL 8.43e-01 -0.0223 0.112 0.188 Treg L2
ENSG00000116133 DHCR24 744808 sc-eQTL 8.40e-01 0.0185 0.0916 0.19 cDC L2
ENSG00000162402 USP24 416639 sc-eQTL 9.92e-01 -0.00106 0.113 0.19 cDC L2
ENSG00000243725 TTC4 916142 sc-eQTL 1.88e-01 0.152 0.115 0.19 cDC L2
ENSG00000116133 DHCR24 744808 sc-eQTL 1.69e-01 0.0886 0.0642 0.188 cMono_IL1B L2
ENSG00000162402 USP24 416639 sc-eQTL 6.76e-01 -0.0305 0.0729 0.188 cMono_IL1B L2
ENSG00000243725 TTC4 916142 sc-eQTL 3.68e-01 -0.1 0.111 0.188 cMono_IL1B L2
ENSG00000116133 DHCR24 744808 sc-eQTL 6.68e-01 0.0259 0.0603 0.188 cMono_S100A L2
ENSG00000162402 USP24 416639 sc-eQTL 4.85e-01 0.0625 0.0893 0.188 cMono_S100A L2
ENSG00000243725 TTC4 916142 sc-eQTL 6.49e-01 -0.051 0.112 0.188 cMono_S100A L2
ENSG00000006555 TTC22 830680 sc-eQTL 4.01e-02 -0.212 0.102 0.209 gdT L2
ENSG00000116133 DHCR24 744808 sc-eQTL 3.47e-01 0.109 0.115 0.209 gdT L2
ENSG00000162402 USP24 416639 sc-eQTL 7.47e-01 0.0358 0.111 0.209 gdT L2
ENSG00000243725 TTC4 916142 sc-eQTL 7.89e-01 0.0348 0.13 0.209 gdT L2
ENSG00000116133 DHCR24 744808 sc-eQTL 4.14e-01 0.0663 0.0811 0.187 intMono L2
ENSG00000162402 USP24 416639 sc-eQTL 6.98e-01 0.0402 0.103 0.187 intMono L2
ENSG00000243725 TTC4 916142 sc-eQTL 9.56e-01 -0.00608 0.11 0.187 intMono L2
ENSG00000116133 DHCR24 744808 sc-eQTL 6.68e-01 0.0363 0.0844 0.179 ncMono L2
ENSG00000162402 USP24 416639 sc-eQTL 9.93e-01 -0.000856 0.0952 0.179 ncMono L2
ENSG00000243725 TTC4 916142 sc-eQTL 2.56e-01 -0.128 0.112 0.179 ncMono L2
ENSG00000116133 DHCR24 744808 sc-eQTL 6.20e-01 0.0488 0.0983 0.195 pDC L2
ENSG00000162402 USP24 416639 sc-eQTL 9.08e-01 0.00914 0.0789 0.195 pDC L2
ENSG00000243725 TTC4 916142 sc-eQTL 5.55e-03 0.342 0.121 0.195 pDC L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000006555 TTC22 830680 sc-eQTL 4.86e-01 0.0731 0.105 0.188 B_Memory LOneK1K
ENSG00000116133 DHCR24 744808 sc-eQTL 1.59e-01 -0.148 0.105 0.188 B_Memory LOneK1K
ENSG00000162402 USP24 416639 sc-eQTL 1.42e-01 -0.11 0.0748 0.188 B_Memory LOneK1K
ENSG00000243725 TTC4 916142 sc-eQTL 5.82e-01 0.0572 0.104 0.188 B_Memory LOneK1K
ENSG00000006555 TTC22 830680 sc-eQTL 8.64e-01 0.0187 0.11 0.188 B_Naive LOneK1K
ENSG00000116133 DHCR24 744808 sc-eQTL 7.99e-01 -0.0252 0.0988 0.188 B_Naive LOneK1K
ENSG00000162402 USP24 416639 sc-eQTL 2.08e-01 -0.088 0.0697 0.188 B_Naive LOneK1K
ENSG00000243725 TTC4 916142 sc-eQTL 3.79e-01 -0.0916 0.104 0.188 B_Naive LOneK1K
ENSG00000116133 DHCR24 744808 sc-eQTL 2.04e-01 0.0791 0.0621 0.188 CD14_Mono LOneK1K
ENSG00000162402 USP24 416639 sc-eQTL 7.45e-01 0.0221 0.0681 0.188 CD14_Mono LOneK1K
ENSG00000243725 TTC4 916142 sc-eQTL 4.12e-01 -0.0927 0.113 0.188 CD14_Mono LOneK1K
ENSG00000116133 DHCR24 744808 sc-eQTL 1.65e-01 0.106 0.0763 0.19 CD16_Mono LOneK1K
ENSG00000162402 USP24 416639 sc-eQTL 4.89e-01 0.0598 0.0861 0.19 CD16_Mono LOneK1K
ENSG00000243725 TTC4 916142 sc-eQTL 5.16e-01 -0.0703 0.108 0.19 CD16_Mono LOneK1K
ENSG00000006555 TTC22 830680 sc-eQTL 2.16e-01 -0.111 0.0892 0.19 NK_CD56dim LOneK1K
ENSG00000116133 DHCR24 744808 sc-eQTL 1.56e-01 0.133 0.0931 0.19 NK_CD56dim LOneK1K
ENSG00000162398 LEXM 825940 sc-eQTL 6.17e-01 -0.044 0.0879 0.19 NK_CD56dim LOneK1K
ENSG00000162402 USP24 416639 sc-eQTL 9.71e-01 -0.00205 0.0557 0.19 NK_CD56dim LOneK1K
ENSG00000243725 TTC4 916142 sc-eQTL 1.16e-01 -0.156 0.0987 0.19 NK_CD56dim LOneK1K

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000162396 \N 867480 2.95e-07 2.67e-07 7e-08 2.62e-07 1.03e-07 7.75e-08 2.5e-07 5.56e-08 1.89e-07 1.05e-07 2.38e-07 1.46e-07 5.39e-07 8.55e-08 6.53e-08 9.35e-08 4.35e-08 2.66e-07 7.11e-08 6.02e-08 1.24e-07 2.06e-07 1.58e-07 2.83e-08 3.27e-07 1.26e-07 1.29e-07 1.44e-07 1.39e-07 1.06e-07 1.59e-07 3.66e-08 4.37e-08 9.09e-08 6.78e-08 2.74e-08 5.96e-08 8.37e-08 6.21e-08 3.05e-08 5e-08 6.95e-07 4.76e-08 1.24e-08 3.81e-08 1.59e-08 1e-07 1.9e-09 5.54e-08
ENSG00000184313 \N 990249 2.76e-07 1.78e-07 6.26e-08 2.36e-07 9.79e-08 8.45e-08 1.9e-07 5.43e-08 1.54e-07 7.6e-08 1.69e-07 1.19e-07 3.48e-07 8e-08 5.69e-08 8.08e-08 4.18e-08 2.04e-07 7.16e-08 5.2e-08 1.27e-07 1.65e-07 1.5e-07 3.03e-08 2.37e-07 1.26e-07 1.17e-07 1.12e-07 1.31e-07 1e-07 1.22e-07 2.96e-08 3.13e-08 9.3e-08 3.57e-08 3.14e-08 4.43e-08 8.61e-08 6.76e-08 7.67e-08 4.64e-08 4.35e-07 5.24e-08 5.54e-09 4.67e-08 9.31e-09 1.18e-07 3.78e-09 4.82e-08