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Genes within 1Mb (chr1:55630271:C:T):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000006555 TTC22 828948 sc-eQTL 1.24e-01 0.128 0.0829 0.596 B L1
ENSG00000116133 DHCR24 743076 sc-eQTL 7.25e-01 0.0278 0.0788 0.596 B L1
ENSG00000162402 USP24 414907 sc-eQTL 6.26e-02 -0.0893 0.0477 0.596 B L1
ENSG00000243725 TTC4 914410 sc-eQTL 2.73e-01 -0.0884 0.0804 0.596 B L1
ENSG00000006555 TTC22 828948 sc-eQTL 8.73e-01 -0.0104 0.0646 0.596 CD4T L1
ENSG00000162402 USP24 414907 sc-eQTL 5.04e-01 -0.0307 0.0459 0.596 CD4T L1
ENSG00000243725 TTC4 914410 sc-eQTL 7.96e-01 -0.0179 0.0692 0.596 CD4T L1
ENSG00000006555 TTC22 828948 sc-eQTL 8.62e-01 -0.00984 0.0566 0.596 CD8T L1
ENSG00000162402 USP24 414907 sc-eQTL 5.77e-01 -0.0261 0.0468 0.596 CD8T L1
ENSG00000243725 TTC4 914410 sc-eQTL 1.98e-01 0.104 0.0809 0.596 CD8T L1
ENSG00000116133 DHCR24 743076 sc-eQTL 4.78e-02 0.154 0.0771 0.599 DC L1
ENSG00000162402 USP24 414907 sc-eQTL 2.26e-01 0.0577 0.0475 0.599 DC L1
ENSG00000243725 TTC4 914410 sc-eQTL 2.68e-01 0.103 0.0925 0.599 DC L1
ENSG00000116133 DHCR24 743076 sc-eQTL 5.79e-02 0.103 0.0538 0.596 Mono L1
ENSG00000162402 USP24 414907 sc-eQTL 3.78e-01 0.0438 0.0496 0.596 Mono L1
ENSG00000243725 TTC4 914410 sc-eQTL 3.28e-01 0.0855 0.0873 0.596 Mono L1
ENSG00000006555 TTC22 828948 sc-eQTL 6.28e-01 -0.0365 0.0751 0.597 NK L1
ENSG00000116133 DHCR24 743076 sc-eQTL 9.18e-01 -0.00786 0.0759 0.597 NK L1
ENSG00000162398 LEXM 824208 sc-eQTL 3.66e-02 -0.148 0.0702 0.597 NK L1
ENSG00000162402 USP24 414907 sc-eQTL 3.06e-02 0.0926 0.0425 0.597 NK L1
ENSG00000243725 TTC4 914410 sc-eQTL 6.35e-01 0.0386 0.0813 0.597 NK L1
ENSG00000006555 TTC22 828948 sc-eQTL 2.26e-01 0.0814 0.0669 0.596 Other_T L1
ENSG00000116133 DHCR24 743076 sc-eQTL 8.78e-01 0.00801 0.0521 0.596 Other_T L1
ENSG00000162402 USP24 414907 sc-eQTL 8.82e-01 0.00914 0.0617 0.596 Other_T L1
ENSG00000243725 TTC4 914410 sc-eQTL 2.58e-01 0.0952 0.0838 0.596 Other_T L1
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000006555 TTC22 828948 sc-eQTL 5.42e-01 0.0425 0.0696 0.592 B_Activated L2
ENSG00000116133 DHCR24 743076 sc-eQTL 6.43e-02 0.151 0.081 0.592 B_Activated L2
ENSG00000162402 USP24 414907 sc-eQTL 7.54e-01 -0.0279 0.089 0.592 B_Activated L2
ENSG00000243725 TTC4 914410 sc-eQTL 8.71e-02 -0.145 0.0845 0.592 B_Activated L2
ENSG00000006555 TTC22 828948 sc-eQTL 6.34e-01 0.0433 0.0909 0.599 B_Intermediate L2
ENSG00000116133 DHCR24 743076 sc-eQTL 6.67e-01 0.0363 0.0843 0.599 B_Intermediate L2
ENSG00000162402 USP24 414907 sc-eQTL 5.54e-01 0.0394 0.0665 0.599 B_Intermediate L2
ENSG00000243725 TTC4 914410 sc-eQTL 5.13e-01 0.0562 0.0856 0.599 B_Intermediate L2
ENSG00000006555 TTC22 828948 sc-eQTL 4.90e-01 0.0603 0.0872 0.601 B_Memory L2
ENSG00000116133 DHCR24 743076 sc-eQTL 4.60e-01 -0.064 0.0866 0.601 B_Memory L2
ENSG00000162402 USP24 414907 sc-eQTL 1.16e-01 -0.112 0.071 0.601 B_Memory L2
ENSG00000243725 TTC4 914410 sc-eQTL 3.83e-01 -0.0799 0.0914 0.601 B_Memory L2
ENSG00000006555 TTC22 828948 sc-eQTL 7.97e-01 0.023 0.0894 0.596 B_Naive1 L2
ENSG00000116133 DHCR24 743076 sc-eQTL 3.79e-01 -0.0737 0.0837 0.596 B_Naive1 L2
ENSG00000162402 USP24 414907 sc-eQTL 1.13e-01 -0.095 0.0597 0.596 B_Naive1 L2
ENSG00000243725 TTC4 914410 sc-eQTL 7.18e-01 -0.0296 0.0818 0.596 B_Naive1 L2
ENSG00000006555 TTC22 828948 sc-eQTL 2.35e-01 0.106 0.0894 0.599 B_Naive2 L2
ENSG00000116133 DHCR24 743076 sc-eQTL 7.68e-01 0.0231 0.0781 0.599 B_Naive2 L2
ENSG00000162402 USP24 414907 sc-eQTL 9.01e-01 -0.00814 0.0655 0.599 B_Naive2 L2
ENSG00000243725 TTC4 914410 sc-eQTL 4.60e-01 0.071 0.0959 0.599 B_Naive2 L2
ENSG00000006555 TTC22 828948 sc-eQTL 5.46e-01 -0.0529 0.0873 0.593 CD4_CTL L2
ENSG00000162402 USP24 414907 sc-eQTL 6.70e-01 -0.0362 0.0849 0.593 CD4_CTL L2
ENSG00000243725 TTC4 914410 sc-eQTL 3.93e-01 -0.0813 0.0949 0.593 CD4_CTL L2
ENSG00000006555 TTC22 828948 sc-eQTL 3.95e-01 -0.0649 0.0761 0.596 CD4_Naive L2
ENSG00000162402 USP24 414907 sc-eQTL 4.37e-01 0.039 0.05 0.596 CD4_Naive L2
ENSG00000243725 TTC4 914410 sc-eQTL 9.38e-01 0.00592 0.0763 0.596 CD4_Naive L2
ENSG00000006555 TTC22 828948 sc-eQTL 5.46e-01 0.0487 0.0805 0.596 CD4_TCM L2
ENSG00000162402 USP24 414907 sc-eQTL 1.03e-01 -0.0983 0.0601 0.596 CD4_TCM L2
ENSG00000243725 TTC4 914410 sc-eQTL 2.66e-01 -0.0968 0.0868 0.596 CD4_TCM L2
ENSG00000006555 TTC22 828948 sc-eQTL 7.11e-01 0.0344 0.0927 0.596 CD4_TEM L2
ENSG00000162402 USP24 414907 sc-eQTL 8.17e-01 -0.0159 0.0683 0.596 CD4_TEM L2
ENSG00000243725 TTC4 914410 sc-eQTL 7.46e-01 -0.0293 0.0903 0.596 CD4_TEM L2
ENSG00000006555 TTC22 828948 sc-eQTL 6.45e-01 -0.0344 0.0746 0.596 CD8_CTL L2
ENSG00000162402 USP24 414907 sc-eQTL 6.64e-01 -0.0252 0.0578 0.596 CD8_CTL L2
ENSG00000243725 TTC4 914410 sc-eQTL 1.31e-01 0.131 0.0861 0.596 CD8_CTL L2
ENSG00000006555 TTC22 828948 sc-eQTL 2.19e-01 0.102 0.083 0.596 CD8_Naive L2
ENSG00000162402 USP24 414907 sc-eQTL 8.91e-01 -0.00833 0.0608 0.596 CD8_Naive L2
ENSG00000243725 TTC4 914410 sc-eQTL 1.64e-01 0.124 0.0886 0.596 CD8_Naive L2
ENSG00000006555 TTC22 828948 sc-eQTL 6.31e-02 0.171 0.0913 0.602 CD8_TCM L2
ENSG00000162402 USP24 414907 sc-eQTL 7.68e-01 -0.023 0.0778 0.602 CD8_TCM L2
ENSG00000243725 TTC4 914410 sc-eQTL 4.64e-02 0.188 0.0936 0.602 CD8_TCM L2
ENSG00000006555 TTC22 828948 sc-eQTL 9.91e-01 0.000957 0.0895 0.6 CD8_TEM L2
ENSG00000162402 USP24 414907 sc-eQTL 8.67e-01 -0.0153 0.0913 0.6 CD8_TEM L2
ENSG00000243725 TTC4 914410 sc-eQTL 6.22e-01 -0.0458 0.0927 0.6 CD8_TEM L2
ENSG00000006555 TTC22 828948 sc-eQTL 2.67e-01 0.0894 0.0804 0.593 MAIT L2
ENSG00000116133 DHCR24 743076 sc-eQTL 8.79e-01 0.00909 0.0597 0.593 MAIT L2
ENSG00000162402 USP24 414907 sc-eQTL 5.62e-01 -0.0422 0.0725 0.593 MAIT L2
ENSG00000243725 TTC4 914410 sc-eQTL 7.16e-01 0.0305 0.0838 0.593 MAIT L2
ENSG00000006555 TTC22 828948 sc-eQTL 1.46e-02 -0.22 0.0893 0.591 NK_CD56bright L2
ENSG00000116133 DHCR24 743076 sc-eQTL 2.78e-01 -0.0868 0.0798 0.591 NK_CD56bright L2
ENSG00000162398 LEXM 824208 sc-eQTL 8.32e-01 -0.0174 0.082 0.591 NK_CD56bright L2
ENSG00000162402 USP24 414907 sc-eQTL 7.28e-01 0.0246 0.0706 0.591 NK_CD56bright L2
ENSG00000243725 TTC4 914410 sc-eQTL 7.48e-02 0.158 0.0883 0.591 NK_CD56bright L2
ENSG00000006555 TTC22 828948 sc-eQTL 8.06e-01 0.0185 0.0751 0.597 NK_CD56dim L2
ENSG00000116133 DHCR24 743076 sc-eQTL 9.50e-01 0.00495 0.0784 0.597 NK_CD56dim L2
ENSG00000162398 LEXM 824208 sc-eQTL 5.45e-02 -0.148 0.0764 0.597 NK_CD56dim L2
ENSG00000162402 USP24 414907 sc-eQTL 5.53e-02 0.0936 0.0485 0.597 NK_CD56dim L2
ENSG00000243725 TTC4 914410 sc-eQTL 9.62e-01 0.00401 0.0838 0.597 NK_CD56dim L2
ENSG00000006555 TTC22 828948 sc-eQTL 5.65e-01 0.0532 0.0923 0.591 NK_HLA L2
ENSG00000116133 DHCR24 743076 sc-eQTL 4.64e-01 -0.066 0.0899 0.591 NK_HLA L2
ENSG00000162398 LEXM 824208 sc-eQTL 6.31e-02 -0.162 0.0867 0.591 NK_HLA L2
ENSG00000162402 USP24 414907 sc-eQTL 4.74e-01 0.046 0.0641 0.591 NK_HLA L2
ENSG00000243725 TTC4 914410 sc-eQTL 7.18e-01 0.0347 0.0959 0.591 NK_HLA L2
ENSG00000006555 TTC22 828948 sc-eQTL 9.25e-01 0.00769 0.0812 0.597 NK_cytokine L2
ENSG00000116133 DHCR24 743076 sc-eQTL 7.51e-01 -0.0261 0.0821 0.597 NK_cytokine L2
ENSG00000162398 LEXM 824208 sc-eQTL 2.50e-01 -0.0985 0.0854 0.597 NK_cytokine L2
ENSG00000162402 USP24 414907 sc-eQTL 2.75e-01 0.0637 0.0582 0.597 NK_cytokine L2
ENSG00000243725 TTC4 914410 sc-eQTL 6.37e-01 -0.0408 0.0865 0.597 NK_cytokine L2
ENSG00000006555 TTC22 828948 sc-eQTL 8.45e-01 -0.0207 0.105 0.593 PB L2
ENSG00000116133 DHCR24 743076 sc-eQTL 6.89e-01 0.0374 0.0933 0.593 PB L2
ENSG00000162402 USP24 414907 sc-eQTL 2.75e-01 0.124 0.113 0.593 PB L2
ENSG00000243725 TTC4 914410 sc-eQTL 5.56e-01 -0.0647 0.109 0.593 PB L2
ENSG00000006555 TTC22 828948 sc-eQTL 8.80e-01 -0.0124 0.0818 0.598 Pro_T L2
ENSG00000116133 DHCR24 743076 sc-eQTL 8.58e-01 0.0125 0.0695 0.598 Pro_T L2
ENSG00000162402 USP24 414907 sc-eQTL 6.96e-01 0.0308 0.0788 0.598 Pro_T L2
ENSG00000243725 TTC4 914410 sc-eQTL 9.02e-01 0.0107 0.0866 0.598 Pro_T L2
ENSG00000006555 TTC22 828948 sc-eQTL 4.30e-01 -0.0653 0.0826 0.596 Treg L2
ENSG00000162402 USP24 414907 sc-eQTL 1.88e-01 -0.0968 0.0734 0.596 Treg L2
ENSG00000243725 TTC4 914410 sc-eQTL 8.53e-01 0.0172 0.0928 0.596 Treg L2
ENSG00000116133 DHCR24 743076 sc-eQTL 2.95e-01 0.0785 0.0747 0.595 cDC L2
ENSG00000162402 USP24 414907 sc-eQTL 9.53e-01 0.00543 0.0923 0.595 cDC L2
ENSG00000243725 TTC4 914410 sc-eQTL 1.32e-01 0.143 0.0941 0.595 cDC L2
ENSG00000116133 DHCR24 743076 sc-eQTL 2.29e-01 0.0639 0.0529 0.596 cMono_IL1B L2
ENSG00000162402 USP24 414907 sc-eQTL 3.58e-01 0.0553 0.06 0.596 cMono_IL1B L2
ENSG00000243725 TTC4 914410 sc-eQTL 9.96e-02 0.151 0.0913 0.596 cMono_IL1B L2
ENSG00000116133 DHCR24 743076 sc-eQTL 2.96e-01 0.0517 0.0494 0.596 cMono_S100A L2
ENSG00000162402 USP24 414907 sc-eQTL 6.83e-01 -0.03 0.0734 0.596 cMono_S100A L2
ENSG00000243725 TTC4 914410 sc-eQTL 2.58e-01 -0.104 0.0917 0.596 cMono_S100A L2
ENSG00000006555 TTC22 828948 sc-eQTL 2.06e-02 0.194 0.0828 0.621 gdT L2
ENSG00000116133 DHCR24 743076 sc-eQTL 6.20e-01 0.0468 0.094 0.621 gdT L2
ENSG00000162402 USP24 414907 sc-eQTL 4.23e-02 0.183 0.0891 0.621 gdT L2
ENSG00000243725 TTC4 914410 sc-eQTL 2.35e-01 0.126 0.105 0.621 gdT L2
ENSG00000116133 DHCR24 743076 sc-eQTL 5.68e-01 0.0381 0.0666 0.6 intMono L2
ENSG00000162402 USP24 414907 sc-eQTL 9.59e-01 -0.00433 0.0849 0.6 intMono L2
ENSG00000243725 TTC4 914410 sc-eQTL 9.70e-01 0.00339 0.0904 0.6 intMono L2
ENSG00000116133 DHCR24 743076 sc-eQTL 8.45e-01 0.0132 0.0674 0.602 ncMono L2
ENSG00000162402 USP24 414907 sc-eQTL 9.80e-01 0.00189 0.076 0.602 ncMono L2
ENSG00000243725 TTC4 914410 sc-eQTL 9.52e-02 0.15 0.0893 0.602 ncMono L2
ENSG00000116133 DHCR24 743076 sc-eQTL 1.34e-01 0.125 0.0828 0.605 pDC L2
ENSG00000162402 USP24 414907 sc-eQTL 7.88e-01 0.018 0.0669 0.605 pDC L2
ENSG00000243725 TTC4 914410 sc-eQTL 5.65e-01 0.0608 0.105 0.605 pDC L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000006555 TTC22 828948 sc-eQTL 3.14e-01 0.0861 0.0854 0.596 B_Memory LOneK1K
ENSG00000116133 DHCR24 743076 sc-eQTL 9.02e-01 -0.0106 0.0859 0.596 B_Memory LOneK1K
ENSG00000162402 USP24 414907 sc-eQTL 5.08e-01 -0.0406 0.0613 0.596 B_Memory LOneK1K
ENSG00000243725 TTC4 914410 sc-eQTL 3.08e-01 -0.0862 0.0845 0.596 B_Memory LOneK1K
ENSG00000006555 TTC22 828948 sc-eQTL 2.42e-01 0.105 0.0896 0.596 B_Naive LOneK1K
ENSG00000116133 DHCR24 743076 sc-eQTL 6.63e-01 -0.0353 0.081 0.596 B_Naive LOneK1K
ENSG00000162402 USP24 414907 sc-eQTL 2.20e-01 -0.0703 0.0572 0.596 B_Naive LOneK1K
ENSG00000243725 TTC4 914410 sc-eQTL 9.83e-01 -0.00184 0.0854 0.596 B_Naive LOneK1K
ENSG00000116133 DHCR24 743076 sc-eQTL 1.90e-01 0.0666 0.0506 0.596 CD14_Mono LOneK1K
ENSG00000162402 USP24 414907 sc-eQTL 6.82e-01 0.0228 0.0555 0.596 CD14_Mono LOneK1K
ENSG00000243725 TTC4 914410 sc-eQTL 3.08e-01 0.094 0.0919 0.596 CD14_Mono LOneK1K
ENSG00000116133 DHCR24 743076 sc-eQTL 3.26e-01 0.0615 0.0625 0.595 CD16_Mono LOneK1K
ENSG00000162402 USP24 414907 sc-eQTL 6.39e-01 0.0331 0.0704 0.595 CD16_Mono LOneK1K
ENSG00000243725 TTC4 914410 sc-eQTL 3.29e-01 0.0862 0.0881 0.595 CD16_Mono LOneK1K
ENSG00000006555 TTC22 828948 sc-eQTL 7.80e-01 0.0207 0.0738 0.597 NK_CD56dim LOneK1K
ENSG00000116133 DHCR24 743076 sc-eQTL 8.56e-01 -0.014 0.0771 0.597 NK_CD56dim LOneK1K
ENSG00000162398 LEXM 824208 sc-eQTL 4.58e-02 -0.144 0.0718 0.597 NK_CD56dim LOneK1K
ENSG00000162402 USP24 414907 sc-eQTL 4.29e-02 0.0927 0.0455 0.597 NK_CD56dim LOneK1K
ENSG00000243725 TTC4 914410 sc-eQTL 8.19e-01 -0.0188 0.0818 0.597 NK_CD56dim LOneK1K

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000234810 AL603840.1 300983 eQTL 1.02e-05 0.135 0.0303 0.0 0.0 0.367

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000169174 \N 590723 5.59e-07 3.47e-07 7.87e-08 2.96e-07 1.09e-07 1.44e-07 4.09e-07 7.98e-08 2.75e-07 1.7e-07 4.13e-07 2.11e-07 5.39e-07 9.15e-08 1.07e-07 1.53e-07 1.18e-07 3.02e-07 1.27e-07 7.84e-08 1.59e-07 2.51e-07 2.56e-07 7.94e-08 4.88e-07 2.29e-07 1.74e-07 1.69e-07 2.11e-07 2.97e-07 2e-07 5.22e-08 4.87e-08 1.18e-07 1.16e-07 5.32e-08 7.97e-08 5.92e-08 5.98e-08 7.39e-08 4.07e-08 3.66e-07 3.4e-08 1.88e-08 8.68e-08 8.42e-09 9.1e-08 0.0 5.16e-08
ENSG00000234810 AL603840.1 300983 1.29e-06 1.4e-06 2.59e-07 1.3e-06 3.67e-07 6.25e-07 1.5e-06 4.08e-07 1.77e-06 6.69e-07 2.1e-06 8.56e-07 2.61e-06 2.68e-07 5.01e-07 9.72e-07 9.64e-07 1.06e-06 7.14e-07 5.13e-07 7.96e-07 1.92e-06 1.14e-06 6.47e-07 2.44e-06 7.45e-07 9.54e-07 9.43e-07 1.62e-06 1.31e-06 8.13e-07 2.42e-07 2.5e-07 5.73e-07 5.2e-07 4.32e-07 6.69e-07 2.44e-07 4.53e-07 2.37e-07 2.87e-07 2.05e-06 1.14e-07 1.41e-07 3.71e-07 1.85e-07 2.57e-07 3.68e-08 1.86e-07