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Genes within 1Mb (chr1:55624650:C:T):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000006555 TTC22 823327 sc-eQTL 4.36e-01 -0.0648 0.0831 0.605 B L1
ENSG00000116133 DHCR24 737455 sc-eQTL 5.85e-01 -0.043 0.0786 0.605 B L1
ENSG00000162402 USP24 409286 sc-eQTL 9.01e-01 0.00595 0.048 0.605 B L1
ENSG00000243725 TTC4 908789 sc-eQTL 6.10e-01 0.0411 0.0804 0.605 B L1
ENSG00000006555 TTC22 823327 sc-eQTL 5.99e-01 0.0339 0.0644 0.605 CD4T L1
ENSG00000162402 USP24 409286 sc-eQTL 9.30e-01 -0.00407 0.0459 0.605 CD4T L1
ENSG00000243725 TTC4 908789 sc-eQTL 8.94e-01 -0.00926 0.0691 0.605 CD4T L1
ENSG00000006555 TTC22 823327 sc-eQTL 9.09e-01 0.00645 0.0564 0.605 CD8T L1
ENSG00000162402 USP24 409286 sc-eQTL 8.44e-01 -0.00916 0.0466 0.605 CD8T L1
ENSG00000243725 TTC4 908789 sc-eQTL 6.17e-01 0.0405 0.0808 0.605 CD8T L1
ENSG00000116133 DHCR24 737455 sc-eQTL 4.01e-01 -0.0648 0.077 0.604 DC L1
ENSG00000162402 USP24 409286 sc-eQTL 5.01e-01 -0.0318 0.0472 0.604 DC L1
ENSG00000243725 TTC4 908789 sc-eQTL 1.79e-01 0.123 0.0914 0.604 DC L1
ENSG00000116133 DHCR24 737455 sc-eQTL 2.73e-02 -0.118 0.0529 0.605 Mono L1
ENSG00000162402 USP24 409286 sc-eQTL 8.62e-01 0.0085 0.049 0.605 Mono L1
ENSG00000243725 TTC4 908789 sc-eQTL 4.65e-01 -0.063 0.0861 0.605 Mono L1
ENSG00000006555 TTC22 823327 sc-eQTL 1.74e-01 -0.101 0.0739 0.605 NK L1
ENSG00000116133 DHCR24 737455 sc-eQTL 5.86e-01 0.0408 0.0749 0.605 NK L1
ENSG00000162398 LEXM 818587 sc-eQTL 4.65e-02 0.139 0.0694 0.605 NK L1
ENSG00000162402 USP24 409286 sc-eQTL 7.03e-01 -0.0162 0.0425 0.605 NK L1
ENSG00000243725 TTC4 908789 sc-eQTL 9.81e-01 -0.00195 0.0803 0.605 NK L1
ENSG00000006555 TTC22 823327 sc-eQTL 7.54e-01 -0.0211 0.0671 0.605 Other_T L1
ENSG00000116133 DHCR24 737455 sc-eQTL 2.43e-01 0.0608 0.0519 0.605 Other_T L1
ENSG00000162402 USP24 409286 sc-eQTL 4.89e-01 0.0428 0.0617 0.605 Other_T L1
ENSG00000243725 TTC4 908789 sc-eQTL 5.07e-01 -0.0558 0.084 0.605 Other_T L1
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000006555 TTC22 823327 sc-eQTL 8.77e-01 -0.0109 0.0705 0.612 B_Activated L2
ENSG00000116133 DHCR24 737455 sc-eQTL 1.06e-01 -0.134 0.0822 0.612 B_Activated L2
ENSG00000162402 USP24 409286 sc-eQTL 5.78e-01 -0.0503 0.0901 0.612 B_Activated L2
ENSG00000243725 TTC4 908789 sc-eQTL 5.64e-01 0.0498 0.0863 0.612 B_Activated L2
ENSG00000006555 TTC22 823327 sc-eQTL 9.00e-01 -0.0112 0.0896 0.603 B_Intermediate L2
ENSG00000116133 DHCR24 737455 sc-eQTL 7.54e-01 0.026 0.0831 0.603 B_Intermediate L2
ENSG00000162402 USP24 409286 sc-eQTL 9.61e-02 -0.109 0.0652 0.603 B_Intermediate L2
ENSG00000243725 TTC4 908789 sc-eQTL 5.06e-01 0.0563 0.0844 0.603 B_Intermediate L2
ENSG00000006555 TTC22 823327 sc-eQTL 9.63e-01 -0.004 0.0861 0.601 B_Memory L2
ENSG00000116133 DHCR24 737455 sc-eQTL 9.76e-01 -0.00253 0.0855 0.601 B_Memory L2
ENSG00000162402 USP24 409286 sc-eQTL 3.30e-01 0.0686 0.0703 0.601 B_Memory L2
ENSG00000243725 TTC4 908789 sc-eQTL 8.85e-01 0.0131 0.0903 0.601 B_Memory L2
ENSG00000006555 TTC22 823327 sc-eQTL 3.47e-01 -0.0831 0.0883 0.605 B_Naive1 L2
ENSG00000116133 DHCR24 737455 sc-eQTL 6.36e-01 0.0393 0.0829 0.605 B_Naive1 L2
ENSG00000162402 USP24 409286 sc-eQTL 1.00e-01 0.0975 0.0591 0.605 B_Naive1 L2
ENSG00000243725 TTC4 908789 sc-eQTL 6.61e-01 -0.0356 0.081 0.605 B_Naive1 L2
ENSG00000006555 TTC22 823327 sc-eQTL 7.97e-01 -0.0229 0.0892 0.603 B_Naive2 L2
ENSG00000116133 DHCR24 737455 sc-eQTL 1.53e-01 -0.111 0.0773 0.603 B_Naive2 L2
ENSG00000162402 USP24 409286 sc-eQTL 4.24e-01 -0.0522 0.0651 0.603 B_Naive2 L2
ENSG00000243725 TTC4 908789 sc-eQTL 2.20e-01 -0.117 0.0951 0.603 B_Naive2 L2
ENSG00000006555 TTC22 823327 sc-eQTL 4.34e-01 0.0666 0.0849 0.611 CD4_CTL L2
ENSG00000162402 USP24 409286 sc-eQTL 8.55e-01 0.0152 0.0827 0.611 CD4_CTL L2
ENSG00000243725 TTC4 908789 sc-eQTL 1.88e-01 -0.122 0.0922 0.611 CD4_CTL L2
ENSG00000006555 TTC22 823327 sc-eQTL 4.21e-01 0.0609 0.0755 0.605 CD4_Naive L2
ENSG00000162402 USP24 409286 sc-eQTL 3.35e-01 -0.0479 0.0496 0.605 CD4_Naive L2
ENSG00000243725 TTC4 908789 sc-eQTL 7.35e-01 -0.0257 0.0757 0.605 CD4_Naive L2
ENSG00000006555 TTC22 823327 sc-eQTL 5.53e-01 -0.0476 0.0801 0.605 CD4_TCM L2
ENSG00000162402 USP24 409286 sc-eQTL 4.09e-01 0.0497 0.06 0.605 CD4_TCM L2
ENSG00000243725 TTC4 908789 sc-eQTL 4.43e-01 0.0664 0.0864 0.605 CD4_TCM L2
ENSG00000006555 TTC22 823327 sc-eQTL 9.54e-01 0.00536 0.0926 0.605 CD4_TEM L2
ENSG00000162402 USP24 409286 sc-eQTL 7.30e-01 0.0236 0.0682 0.605 CD4_TEM L2
ENSG00000243725 TTC4 908789 sc-eQTL 1.49e-01 0.13 0.0898 0.605 CD4_TEM L2
ENSG00000006555 TTC22 823327 sc-eQTL 9.43e-01 0.00529 0.0742 0.605 CD8_CTL L2
ENSG00000162402 USP24 409286 sc-eQTL 5.94e-01 0.0307 0.0575 0.605 CD8_CTL L2
ENSG00000243725 TTC4 908789 sc-eQTL 1.97e-01 -0.111 0.0858 0.605 CD8_CTL L2
ENSG00000006555 TTC22 823327 sc-eQTL 8.60e-01 -0.0147 0.0831 0.605 CD8_Naive L2
ENSG00000162402 USP24 409286 sc-eQTL 9.08e-01 0.00703 0.0607 0.605 CD8_Naive L2
ENSG00000243725 TTC4 908789 sc-eQTL 7.20e-01 0.0319 0.0888 0.605 CD8_Naive L2
ENSG00000006555 TTC22 823327 sc-eQTL 6.21e-02 -0.169 0.0898 0.602 CD8_TCM L2
ENSG00000162402 USP24 409286 sc-eQTL 8.73e-02 -0.131 0.076 0.602 CD8_TCM L2
ENSG00000243725 TTC4 908789 sc-eQTL 4.76e-01 -0.0665 0.093 0.602 CD8_TCM L2
ENSG00000006555 TTC22 823327 sc-eQTL 8.52e-01 -0.0165 0.0882 0.6 CD8_TEM L2
ENSG00000162402 USP24 409286 sc-eQTL 8.97e-01 -0.0117 0.0899 0.6 CD8_TEM L2
ENSG00000243725 TTC4 908789 sc-eQTL 9.39e-01 -0.00696 0.0914 0.6 CD8_TEM L2
ENSG00000006555 TTC22 823327 sc-eQTL 2.21e-01 0.0972 0.0792 0.608 MAIT L2
ENSG00000116133 DHCR24 737455 sc-eQTL 8.17e-01 0.0137 0.0589 0.608 MAIT L2
ENSG00000162402 USP24 409286 sc-eQTL 2.73e-01 0.0784 0.0714 0.608 MAIT L2
ENSG00000243725 TTC4 908789 sc-eQTL 3.95e-01 -0.0703 0.0826 0.608 MAIT L2
ENSG00000006555 TTC22 823327 sc-eQTL 8.01e-01 0.023 0.091 0.609 NK_CD56bright L2
ENSG00000116133 DHCR24 737455 sc-eQTL 6.34e-01 0.0384 0.0804 0.609 NK_CD56bright L2
ENSG00000162398 LEXM 818587 sc-eQTL 6.76e-01 0.0345 0.0824 0.609 NK_CD56bright L2
ENSG00000162402 USP24 409286 sc-eQTL 8.71e-01 -0.0115 0.0709 0.609 NK_CD56bright L2
ENSG00000243725 TTC4 908789 sc-eQTL 1.88e-01 -0.118 0.0891 0.609 NK_CD56bright L2
ENSG00000006555 TTC22 823327 sc-eQTL 9.97e-01 -0.000251 0.075 0.606 NK_CD56dim L2
ENSG00000116133 DHCR24 737455 sc-eQTL 3.67e-01 0.0707 0.0781 0.606 NK_CD56dim L2
ENSG00000162398 LEXM 818587 sc-eQTL 7.00e-03 0.206 0.0756 0.606 NK_CD56dim L2
ENSG00000162402 USP24 409286 sc-eQTL 2.12e-01 -0.061 0.0487 0.606 NK_CD56dim L2
ENSG00000243725 TTC4 908789 sc-eQTL 8.10e-01 0.0201 0.0837 0.606 NK_CD56dim L2
ENSG00000006555 TTC22 823327 sc-eQTL 9.97e-01 -0.000356 0.0884 0.607 NK_HLA L2
ENSG00000116133 DHCR24 737455 sc-eQTL 8.97e-02 0.146 0.0856 0.607 NK_HLA L2
ENSG00000162398 LEXM 818587 sc-eQTL 2.70e-01 0.0924 0.0835 0.607 NK_HLA L2
ENSG00000162402 USP24 409286 sc-eQTL 5.19e-01 0.0397 0.0614 0.607 NK_HLA L2
ENSG00000243725 TTC4 908789 sc-eQTL 2.15e-01 -0.114 0.0915 0.607 NK_HLA L2
ENSG00000006555 TTC22 823327 sc-eQTL 4.40e-02 -0.16 0.0789 0.606 NK_cytokine L2
ENSG00000116133 DHCR24 737455 sc-eQTL 9.93e-01 -0.000725 0.0805 0.606 NK_cytokine L2
ENSG00000162398 LEXM 818587 sc-eQTL 6.26e-01 -0.0409 0.0839 0.606 NK_cytokine L2
ENSG00000162402 USP24 409286 sc-eQTL 7.84e-01 -0.0157 0.0572 0.606 NK_cytokine L2
ENSG00000243725 TTC4 908789 sc-eQTL 6.62e-01 0.0371 0.0848 0.606 NK_cytokine L2
ENSG00000006555 TTC22 823327 sc-eQTL 9.33e-01 -0.00886 0.104 0.611 PB L2
ENSG00000116133 DHCR24 737455 sc-eQTL 9.49e-01 -0.0059 0.0926 0.611 PB L2
ENSG00000162402 USP24 409286 sc-eQTL 4.29e-01 0.0889 0.112 0.611 PB L2
ENSG00000243725 TTC4 908789 sc-eQTL 1.32e-01 0.163 0.108 0.611 PB L2
ENSG00000006555 TTC22 823327 sc-eQTL 9.09e-01 0.00939 0.0822 0.604 Pro_T L2
ENSG00000116133 DHCR24 737455 sc-eQTL 4.21e-01 0.0563 0.0697 0.604 Pro_T L2
ENSG00000162402 USP24 409286 sc-eQTL 3.79e-01 -0.0698 0.0791 0.604 Pro_T L2
ENSG00000243725 TTC4 908789 sc-eQTL 2.40e-01 0.102 0.0867 0.604 Pro_T L2
ENSG00000006555 TTC22 823327 sc-eQTL 9.59e-01 0.00427 0.0821 0.605 Treg L2
ENSG00000162402 USP24 409286 sc-eQTL 5.18e-01 0.0473 0.0731 0.605 Treg L2
ENSG00000243725 TTC4 908789 sc-eQTL 4.68e-02 -0.183 0.0913 0.605 Treg L2
ENSG00000116133 DHCR24 737455 sc-eQTL 9.51e-01 -0.00472 0.0761 0.607 cDC L2
ENSG00000162402 USP24 409286 sc-eQTL 5.40e-01 -0.0574 0.0936 0.607 cDC L2
ENSG00000243725 TTC4 908789 sc-eQTL 9.48e-01 -0.00625 0.0961 0.607 cDC L2
ENSG00000116133 DHCR24 737455 sc-eQTL 1.49e-01 -0.076 0.0525 0.605 cMono_IL1B L2
ENSG00000162402 USP24 409286 sc-eQTL 2.16e-01 -0.0738 0.0594 0.605 cMono_IL1B L2
ENSG00000243725 TTC4 908789 sc-eQTL 1.83e-01 -0.122 0.0909 0.605 cMono_IL1B L2
ENSG00000116133 DHCR24 737455 sc-eQTL 1.27e-01 -0.0745 0.0487 0.605 cMono_S100A L2
ENSG00000162402 USP24 409286 sc-eQTL 2.21e-01 0.0888 0.0723 0.605 cMono_S100A L2
ENSG00000243725 TTC4 908789 sc-eQTL 8.20e-01 -0.0207 0.0909 0.605 cMono_S100A L2
ENSG00000006555 TTC22 823327 sc-eQTL 2.52e-04 -0.299 0.0796 0.6 gdT L2
ENSG00000116133 DHCR24 737455 sc-eQTL 5.30e-01 0.0585 0.0929 0.6 gdT L2
ENSG00000162402 USP24 409286 sc-eQTL 5.82e-02 -0.169 0.0883 0.6 gdT L2
ENSG00000243725 TTC4 908789 sc-eQTL 5.57e-01 -0.0615 0.105 0.6 gdT L2
ENSG00000116133 DHCR24 737455 sc-eQTL 3.44e-01 -0.0631 0.0665 0.598 intMono L2
ENSG00000162402 USP24 409286 sc-eQTL 4.94e-01 -0.0581 0.0848 0.598 intMono L2
ENSG00000243725 TTC4 908789 sc-eQTL 8.26e-01 0.0199 0.0904 0.598 intMono L2
ENSG00000116133 DHCR24 737455 sc-eQTL 2.78e-01 -0.0714 0.0656 0.6 ncMono L2
ENSG00000162402 USP24 409286 sc-eQTL 9.81e-01 0.00173 0.0742 0.6 ncMono L2
ENSG00000243725 TTC4 908789 sc-eQTL 4.67e-01 -0.064 0.0877 0.6 ncMono L2
ENSG00000116133 DHCR24 737455 sc-eQTL 7.95e-01 0.0214 0.0825 0.61 pDC L2
ENSG00000162402 USP24 409286 sc-eQTL 5.16e-01 0.0431 0.0661 0.61 pDC L2
ENSG00000243725 TTC4 908789 sc-eQTL 4.56e-02 0.208 0.103 0.61 pDC L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000006555 TTC22 823327 sc-eQTL 8.13e-01 -0.0201 0.085 0.605 B_Memory LOneK1K
ENSG00000116133 DHCR24 737455 sc-eQTL 9.24e-01 0.00815 0.0853 0.605 B_Memory LOneK1K
ENSG00000162402 USP24 409286 sc-eQTL 9.38e-01 -0.00477 0.0609 0.605 B_Memory LOneK1K
ENSG00000243725 TTC4 908789 sc-eQTL 1.44e-01 0.123 0.0836 0.605 B_Memory LOneK1K
ENSG00000006555 TTC22 823327 sc-eQTL 3.51e-01 -0.083 0.0889 0.605 B_Naive LOneK1K
ENSG00000116133 DHCR24 737455 sc-eQTL 7.13e-01 -0.0295 0.0802 0.605 B_Naive LOneK1K
ENSG00000162402 USP24 409286 sc-eQTL 5.57e-01 0.0334 0.0568 0.605 B_Naive LOneK1K
ENSG00000243725 TTC4 908789 sc-eQTL 4.05e-01 -0.0705 0.0845 0.605 B_Naive LOneK1K
ENSG00000116133 DHCR24 737455 sc-eQTL 5.97e-02 -0.0951 0.0502 0.605 CD14_Mono LOneK1K
ENSG00000162402 USP24 409286 sc-eQTL 9.95e-01 -0.000332 0.0553 0.605 CD14_Mono LOneK1K
ENSG00000243725 TTC4 908789 sc-eQTL 1.81e-01 -0.123 0.0914 0.605 CD14_Mono LOneK1K
ENSG00000116133 DHCR24 737455 sc-eQTL 1.64e-01 -0.087 0.0623 0.606 CD16_Mono LOneK1K
ENSG00000162402 USP24 409286 sc-eQTL 5.82e-01 -0.0388 0.0704 0.606 CD16_Mono LOneK1K
ENSG00000243725 TTC4 908789 sc-eQTL 8.57e-01 -0.016 0.0883 0.606 CD16_Mono LOneK1K
ENSG00000006555 TTC22 823327 sc-eQTL 1.52e-01 -0.104 0.0722 0.606 NK_CD56dim LOneK1K
ENSG00000116133 DHCR24 737455 sc-eQTL 4.05e-01 0.0632 0.0757 0.606 NK_CD56dim LOneK1K
ENSG00000162398 LEXM 818587 sc-eQTL 7.12e-02 0.128 0.0707 0.606 NK_CD56dim LOneK1K
ENSG00000162402 USP24 409286 sc-eQTL 6.43e-01 -0.021 0.0451 0.606 NK_CD56dim LOneK1K
ENSG00000243725 TTC4 908789 sc-eQTL 9.14e-01 0.00873 0.0804 0.606 NK_CD56dim LOneK1K

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000234810 AL603840.1 295362 eQTL 0.0225 -0.0709 0.031 0.0 0.0 0.395

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000169174 \N 585102 4.68e-07 2.4e-07 7.16e-08 2.43e-07 1.11e-07 1.13e-07 3.11e-07 7.46e-08 2.53e-07 1.37e-07 2.68e-07 1.91e-07 3.6e-07 8.42e-08 9.2e-08 1.26e-07 7.3e-08 2.75e-07 8e-08 8.31e-08 1.34e-07 2.15e-07 2e-07 4.81e-08 3.14e-07 1.9e-07 1.48e-07 1.61e-07 1.54e-07 1.81e-07 1.59e-07 5.08e-08 4.97e-08 9.09e-08 1.07e-07 5.14e-08 6.04e-08 6.11e-08 5.27e-08 7.65e-08 4.84e-08 2.19e-07 3.18e-08 1.43e-08 5.4e-08 8.07e-09 7.8e-08 0.0 4.54e-08