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Genes within 1Mb (chr1:55623683:T:C):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000006555 TTC22 822360 sc-eQTL 1.84e-01 -0.109 0.082 0.37 B L1
ENSG00000116133 DHCR24 736488 sc-eQTL 2.17e-01 -0.0962 0.0776 0.37 B L1
ENSG00000162402 USP24 408319 sc-eQTL 2.22e-02 0.108 0.0469 0.37 B L1
ENSG00000243725 TTC4 907822 sc-eQTL 3.95e-01 0.0677 0.0795 0.37 B L1
ENSG00000006555 TTC22 822360 sc-eQTL 2.41e-01 -0.0742 0.0631 0.37 CD4T L1
ENSG00000162402 USP24 408319 sc-eQTL 6.06e-01 -0.0233 0.0451 0.37 CD4T L1
ENSG00000243725 TTC4 907822 sc-eQTL 7.78e-01 0.0191 0.0679 0.37 CD4T L1
ENSG00000006555 TTC22 822360 sc-eQTL 8.75e-01 -0.0087 0.0551 0.37 CD8T L1
ENSG00000162402 USP24 408319 sc-eQTL 4.68e-01 0.0331 0.0456 0.37 CD8T L1
ENSG00000243725 TTC4 907822 sc-eQTL 2.12e-01 -0.0987 0.0788 0.37 CD8T L1
ENSG00000116133 DHCR24 736488 sc-eQTL 1.30e-01 -0.116 0.076 0.367 DC L1
ENSG00000162402 USP24 408319 sc-eQTL 4.19e-01 -0.0378 0.0467 0.367 DC L1
ENSG00000243725 TTC4 907822 sc-eQTL 3.75e-01 -0.0806 0.0908 0.367 DC L1
ENSG00000116133 DHCR24 736488 sc-eQTL 1.11e-02 -0.134 0.0524 0.37 Mono L1
ENSG00000162402 USP24 408319 sc-eQTL 9.61e-01 0.00239 0.0487 0.37 Mono L1
ENSG00000243725 TTC4 907822 sc-eQTL 6.87e-01 -0.0346 0.0857 0.37 Mono L1
ENSG00000006555 TTC22 822360 sc-eQTL 9.87e-01 0.00122 0.0731 0.369 NK L1
ENSG00000116133 DHCR24 736488 sc-eQTL 3.43e-01 -0.0699 0.0736 0.369 NK L1
ENSG00000162398 LEXM 817620 sc-eQTL 1.55e-01 0.0979 0.0686 0.369 NK L1
ENSG00000162402 USP24 408319 sc-eQTL 5.88e-01 0.0226 0.0418 0.369 NK L1
ENSG00000243725 TTC4 907822 sc-eQTL 9.55e-01 -0.00446 0.0791 0.369 NK L1
ENSG00000006555 TTC22 822360 sc-eQTL 6.80e-01 -0.0272 0.0658 0.37 Other_T L1
ENSG00000116133 DHCR24 736488 sc-eQTL 5.39e-01 -0.0314 0.051 0.37 Other_T L1
ENSG00000162402 USP24 408319 sc-eQTL 3.72e-01 0.054 0.0604 0.37 Other_T L1
ENSG00000243725 TTC4 907822 sc-eQTL 3.57e-01 -0.0759 0.0822 0.37 Other_T L1
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000006555 TTC22 822360 sc-eQTL 8.32e-01 -0.0144 0.0679 0.375 B_Activated L2
ENSG00000116133 DHCR24 736488 sc-eQTL 7.12e-02 -0.143 0.079 0.375 B_Activated L2
ENSG00000162402 USP24 408319 sc-eQTL 3.75e-01 -0.077 0.0866 0.375 B_Activated L2
ENSG00000243725 TTC4 907822 sc-eQTL 8.05e-01 0.0206 0.0831 0.375 B_Activated L2
ENSG00000006555 TTC22 822360 sc-eQTL 3.69e-02 -0.187 0.0892 0.367 B_Intermediate L2
ENSG00000116133 DHCR24 736488 sc-eQTL 8.38e-01 -0.0171 0.0836 0.367 B_Intermediate L2
ENSG00000162402 USP24 408319 sc-eQTL 6.89e-01 0.0265 0.066 0.367 B_Intermediate L2
ENSG00000243725 TTC4 907822 sc-eQTL 1.50e-01 0.122 0.0845 0.367 B_Intermediate L2
ENSG00000006555 TTC22 822360 sc-eQTL 9.89e-01 -0.00119 0.0853 0.364 B_Memory L2
ENSG00000116133 DHCR24 736488 sc-eQTL 4.83e-01 0.0594 0.0845 0.364 B_Memory L2
ENSG00000162402 USP24 408319 sc-eQTL 7.48e-01 0.0224 0.0698 0.364 B_Memory L2
ENSG00000243725 TTC4 907822 sc-eQTL 2.86e-01 -0.0954 0.0892 0.364 B_Memory L2
ENSG00000006555 TTC22 822360 sc-eQTL 9.03e-01 0.0109 0.0891 0.37 B_Naive1 L2
ENSG00000116133 DHCR24 736488 sc-eQTL 8.58e-01 -0.015 0.0835 0.37 B_Naive1 L2
ENSG00000162402 USP24 408319 sc-eQTL 8.05e-03 0.158 0.0589 0.37 B_Naive1 L2
ENSG00000243725 TTC4 907822 sc-eQTL 5.84e-01 0.0447 0.0815 0.37 B_Naive1 L2
ENSG00000006555 TTC22 822360 sc-eQTL 8.36e-01 -0.0184 0.0891 0.367 B_Naive2 L2
ENSG00000116133 DHCR24 736488 sc-eQTL 1.66e-02 -0.185 0.0765 0.367 B_Naive2 L2
ENSG00000162402 USP24 408319 sc-eQTL 7.81e-01 -0.0181 0.0651 0.367 B_Naive2 L2
ENSG00000243725 TTC4 907822 sc-eQTL 4.42e-01 -0.0734 0.0952 0.367 B_Naive2 L2
ENSG00000006555 TTC22 822360 sc-eQTL 6.28e-01 0.0409 0.0843 0.373 CD4_CTL L2
ENSG00000162402 USP24 408319 sc-eQTL 1.72e-01 0.112 0.0816 0.373 CD4_CTL L2
ENSG00000243725 TTC4 907822 sc-eQTL 6.30e-01 -0.0443 0.0917 0.373 CD4_CTL L2
ENSG00000006555 TTC22 822360 sc-eQTL 6.50e-01 -0.0338 0.0742 0.37 CD4_Naive L2
ENSG00000162402 USP24 408319 sc-eQTL 5.23e-02 -0.0943 0.0483 0.37 CD4_Naive L2
ENSG00000243725 TTC4 907822 sc-eQTL 8.52e-01 0.0139 0.0743 0.37 CD4_Naive L2
ENSG00000006555 TTC22 822360 sc-eQTL 1.39e-01 -0.117 0.0787 0.37 CD4_TCM L2
ENSG00000162402 USP24 408319 sc-eQTL 1.76e-01 0.0802 0.0591 0.37 CD4_TCM L2
ENSG00000243725 TTC4 907822 sc-eQTL 1.08e-01 0.137 0.0849 0.37 CD4_TCM L2
ENSG00000006555 TTC22 822360 sc-eQTL 3.42e-01 -0.0871 0.0915 0.37 CD4_TEM L2
ENSG00000162402 USP24 408319 sc-eQTL 5.06e-01 0.045 0.0675 0.37 CD4_TEM L2
ENSG00000243725 TTC4 907822 sc-eQTL 9.81e-01 0.00213 0.0894 0.37 CD4_TEM L2
ENSG00000006555 TTC22 822360 sc-eQTL 5.48e-01 -0.0438 0.0728 0.37 CD8_CTL L2
ENSG00000162402 USP24 408319 sc-eQTL 9.16e-01 -0.00598 0.0565 0.37 CD8_CTL L2
ENSG00000243725 TTC4 907822 sc-eQTL 4.63e-02 -0.168 0.0837 0.37 CD8_CTL L2
ENSG00000006555 TTC22 822360 sc-eQTL 5.03e-01 -0.0543 0.081 0.37 CD8_Naive L2
ENSG00000162402 USP24 408319 sc-eQTL 9.15e-01 0.00636 0.0592 0.37 CD8_Naive L2
ENSG00000243725 TTC4 907822 sc-eQTL 6.68e-01 -0.0372 0.0866 0.37 CD8_Naive L2
ENSG00000006555 TTC22 822360 sc-eQTL 3.19e-01 -0.0897 0.0899 0.366 CD8_TCM L2
ENSG00000162402 USP24 408319 sc-eQTL 9.30e-01 -0.00668 0.0761 0.366 CD8_TCM L2
ENSG00000243725 TTC4 907822 sc-eQTL 2.31e-01 -0.111 0.0922 0.366 CD8_TCM L2
ENSG00000006555 TTC22 822360 sc-eQTL 4.41e-01 -0.0675 0.0875 0.368 CD8_TEM L2
ENSG00000162402 USP24 408319 sc-eQTL 6.45e-01 0.0412 0.0893 0.368 CD8_TEM L2
ENSG00000243725 TTC4 907822 sc-eQTL 8.96e-01 0.0119 0.0908 0.368 CD8_TEM L2
ENSG00000006555 TTC22 822360 sc-eQTL 9.91e-01 0.000908 0.0773 0.372 MAIT L2
ENSG00000116133 DHCR24 736488 sc-eQTL 3.39e-01 0.0548 0.0571 0.372 MAIT L2
ENSG00000162402 USP24 408319 sc-eQTL 1.86e-01 0.0921 0.0694 0.372 MAIT L2
ENSG00000243725 TTC4 907822 sc-eQTL 8.63e-01 -0.0139 0.0805 0.372 MAIT L2
ENSG00000006555 TTC22 822360 sc-eQTL 7.54e-01 0.0284 0.0904 0.38 NK_CD56bright L2
ENSG00000116133 DHCR24 736488 sc-eQTL 7.69e-01 -0.0235 0.0798 0.38 NK_CD56bright L2
ENSG00000162398 LEXM 817620 sc-eQTL 6.11e-01 0.0417 0.0818 0.38 NK_CD56bright L2
ENSG00000162402 USP24 408319 sc-eQTL 3.31e-01 0.0684 0.0702 0.38 NK_CD56bright L2
ENSG00000243725 TTC4 907822 sc-eQTL 2.62e-01 -0.0996 0.0885 0.38 NK_CD56bright L2
ENSG00000006555 TTC22 822360 sc-eQTL 8.30e-01 -0.0158 0.0737 0.371 NK_CD56dim L2
ENSG00000116133 DHCR24 736488 sc-eQTL 2.48e-01 -0.0888 0.0767 0.371 NK_CD56dim L2
ENSG00000162398 LEXM 817620 sc-eQTL 9.80e-02 0.125 0.0751 0.371 NK_CD56dim L2
ENSG00000162402 USP24 408319 sc-eQTL 8.02e-01 -0.0121 0.048 0.371 NK_CD56dim L2
ENSG00000243725 TTC4 907822 sc-eQTL 5.27e-01 0.0521 0.0822 0.371 NK_CD56dim L2
ENSG00000006555 TTC22 822360 sc-eQTL 2.49e-01 0.103 0.089 0.372 NK_HLA L2
ENSG00000116133 DHCR24 736488 sc-eQTL 1.00e+00 -1.75e-05 0.0871 0.372 NK_HLA L2
ENSG00000162398 LEXM 817620 sc-eQTL 2.32e-01 0.101 0.0843 0.372 NK_HLA L2
ENSG00000162402 USP24 408319 sc-eQTL 9.67e-01 0.00256 0.0621 0.372 NK_HLA L2
ENSG00000243725 TTC4 907822 sc-eQTL 3.43e-01 -0.0878 0.0925 0.372 NK_HLA L2
ENSG00000006555 TTC22 822360 sc-eQTL 5.58e-01 -0.0464 0.079 0.371 NK_cytokine L2
ENSG00000116133 DHCR24 736488 sc-eQTL 4.54e-01 -0.0599 0.0799 0.371 NK_cytokine L2
ENSG00000162398 LEXM 817620 sc-eQTL 8.41e-01 -0.0168 0.0834 0.371 NK_cytokine L2
ENSG00000162402 USP24 408319 sc-eQTL 9.07e-01 0.00668 0.0569 0.371 NK_cytokine L2
ENSG00000243725 TTC4 907822 sc-eQTL 8.96e-01 0.011 0.0843 0.371 NK_cytokine L2
ENSG00000006555 TTC22 822360 sc-eQTL 9.21e-01 0.0103 0.103 0.374 PB L2
ENSG00000116133 DHCR24 736488 sc-eQTL 3.96e-01 0.0772 0.0906 0.374 PB L2
ENSG00000162402 USP24 408319 sc-eQTL 9.68e-01 0.00444 0.11 0.374 PB L2
ENSG00000243725 TTC4 907822 sc-eQTL 6.10e-01 0.0545 0.107 0.374 PB L2
ENSG00000006555 TTC22 822360 sc-eQTL 4.93e-01 0.0549 0.0798 0.37 Pro_T L2
ENSG00000116133 DHCR24 736488 sc-eQTL 5.63e-01 -0.0393 0.0678 0.37 Pro_T L2
ENSG00000162402 USP24 408319 sc-eQTL 6.25e-01 -0.0377 0.077 0.37 Pro_T L2
ENSG00000243725 TTC4 907822 sc-eQTL 8.43e-01 0.0168 0.0846 0.37 Pro_T L2
ENSG00000006555 TTC22 822360 sc-eQTL 6.20e-01 0.0402 0.081 0.37 Treg L2
ENSG00000162402 USP24 408319 sc-eQTL 3.63e-02 0.15 0.0714 0.37 Treg L2
ENSG00000243725 TTC4 907822 sc-eQTL 9.48e-02 -0.151 0.0903 0.37 Treg L2
ENSG00000116133 DHCR24 736488 sc-eQTL 7.92e-01 -0.0201 0.0762 0.371 cDC L2
ENSG00000162402 USP24 408319 sc-eQTL 8.30e-01 0.0202 0.0939 0.371 cDC L2
ENSG00000243725 TTC4 907822 sc-eQTL 2.37e-01 -0.114 0.096 0.371 cDC L2
ENSG00000116133 DHCR24 736488 sc-eQTL 4.81e-02 -0.101 0.051 0.37 cMono_IL1B L2
ENSG00000162402 USP24 408319 sc-eQTL 5.83e-01 0.032 0.0582 0.37 cMono_IL1B L2
ENSG00000243725 TTC4 907822 sc-eQTL 2.92e-01 -0.0939 0.0889 0.37 cMono_IL1B L2
ENSG00000116133 DHCR24 736488 sc-eQTL 1.42e-01 -0.0711 0.0482 0.37 cMono_S100A L2
ENSG00000162402 USP24 408319 sc-eQTL 5.48e-01 0.0433 0.0718 0.37 cMono_S100A L2
ENSG00000243725 TTC4 907822 sc-eQTL 7.63e-01 0.0272 0.09 0.37 cMono_S100A L2
ENSG00000006555 TTC22 822360 sc-eQTL 4.09e-02 -0.174 0.0841 0.364 gdT L2
ENSG00000116133 DHCR24 736488 sc-eQTL 9.58e-01 0.00504 0.0952 0.364 gdT L2
ENSG00000162402 USP24 408319 sc-eQTL 1.64e-01 -0.127 0.0908 0.364 gdT L2
ENSG00000243725 TTC4 907822 sc-eQTL 3.80e-01 -0.0941 0.107 0.364 gdT L2
ENSG00000116133 DHCR24 736488 sc-eQTL 2.97e-01 -0.0676 0.0646 0.367 intMono L2
ENSG00000162402 USP24 408319 sc-eQTL 3.20e-01 -0.0821 0.0823 0.367 intMono L2
ENSG00000243725 TTC4 907822 sc-eQTL 4.65e-01 -0.0642 0.0878 0.367 intMono L2
ENSG00000116133 DHCR24 736488 sc-eQTL 9.22e-01 -0.00631 0.0647 0.364 ncMono L2
ENSG00000162402 USP24 408319 sc-eQTL 4.19e-01 -0.0591 0.0729 0.364 ncMono L2
ENSG00000243725 TTC4 907822 sc-eQTL 8.67e-01 -0.0145 0.0864 0.364 ncMono L2
ENSG00000116133 DHCR24 736488 sc-eQTL 9.32e-02 -0.142 0.0838 0.359 pDC L2
ENSG00000162402 USP24 408319 sc-eQTL 9.02e-01 0.0084 0.0679 0.359 pDC L2
ENSG00000243725 TTC4 907822 sc-eQTL 6.64e-01 0.0466 0.107 0.359 pDC L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000006555 TTC22 822360 sc-eQTL 4.76e-02 -0.165 0.0828 0.37 B_Memory LOneK1K
ENSG00000116133 DHCR24 736488 sc-eQTL 8.61e-01 -0.0148 0.0838 0.37 B_Memory LOneK1K
ENSG00000162402 USP24 408319 sc-eQTL 5.39e-01 0.0368 0.0598 0.37 B_Memory LOneK1K
ENSG00000243725 TTC4 907822 sc-eQTL 1.16e-01 0.13 0.0821 0.37 B_Memory LOneK1K
ENSG00000006555 TTC22 822360 sc-eQTL 8.65e-01 -0.0152 0.0893 0.37 B_Naive LOneK1K
ENSG00000116133 DHCR24 736488 sc-eQTL 2.57e-01 -0.0912 0.0802 0.37 B_Naive LOneK1K
ENSG00000162402 USP24 408319 sc-eQTL 3.90e-02 0.117 0.0564 0.37 B_Naive LOneK1K
ENSG00000243725 TTC4 907822 sc-eQTL 9.21e-01 0.00846 0.0849 0.37 B_Naive LOneK1K
ENSG00000116133 DHCR24 736488 sc-eQTL 1.68e-02 -0.119 0.0493 0.37 CD14_Mono LOneK1K
ENSG00000162402 USP24 408319 sc-eQTL 4.39e-01 0.0423 0.0545 0.37 CD14_Mono LOneK1K
ENSG00000243725 TTC4 907822 sc-eQTL 3.70e-01 -0.0812 0.0904 0.37 CD14_Mono LOneK1K
ENSG00000116133 DHCR24 736488 sc-eQTL 3.61e-01 -0.0556 0.0607 0.371 CD16_Mono LOneK1K
ENSG00000162402 USP24 408319 sc-eQTL 1.60e-01 -0.096 0.0681 0.371 CD16_Mono LOneK1K
ENSG00000243725 TTC4 907822 sc-eQTL 8.04e-01 -0.0213 0.0858 0.371 CD16_Mono LOneK1K
ENSG00000006555 TTC22 822360 sc-eQTL 7.70e-01 -0.0211 0.072 0.371 NK_CD56dim LOneK1K
ENSG00000116133 DHCR24 736488 sc-eQTL 4.19e-01 -0.0608 0.0751 0.371 NK_CD56dim LOneK1K
ENSG00000162398 LEXM 817620 sc-eQTL 2.64e-01 0.0789 0.0705 0.371 NK_CD56dim LOneK1K
ENSG00000162402 USP24 408319 sc-eQTL 6.48e-01 0.0205 0.0448 0.371 NK_CD56dim LOneK1K
ENSG00000243725 TTC4 907822 sc-eQTL 7.00e-01 0.0308 0.0798 0.371 NK_CD56dim LOneK1K

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000234810 AL603840.1 294395 eQTL 7.42e-07 -0.151 0.0302 0.0 0.0 0.342

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000234810 AL603840.1 294395 1.2e-05 1.25e-05 2.91e-06 1.04e-05 2.41e-06 6.12e-06 1.5e-05 2.37e-06 1.18e-05 6.07e-06 1.75e-05 7.21e-06 1.9e-05 5.17e-06 3.49e-06 7.79e-06 6.8e-06 9.69e-06 3.58e-06 3.53e-06 6.52e-06 1.24e-05 1.04e-05 4.78e-06 1.95e-05 4.31e-06 7.15e-06 5.65e-06 1.45e-05 1.21e-05 7.47e-06 1.02e-06 1.3e-06 3.61e-06 5.59e-06 2.87e-06 1.85e-06 2.4e-06 2.25e-06 1.01e-06 1.05e-06 1.59e-05 2.35e-06 1.38e-07 8.03e-07 2.02e-06 2.47e-06 7.99e-07 5.26e-07