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Genes within 1Mb (chr1:55621031:C:T):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000006555 TTC22 819708 sc-eQTL 1.84e-01 -0.109 0.082 0.37 B L1
ENSG00000116133 DHCR24 733836 sc-eQTL 2.17e-01 -0.0962 0.0776 0.37 B L1
ENSG00000162402 USP24 405667 sc-eQTL 2.22e-02 0.108 0.0469 0.37 B L1
ENSG00000243725 TTC4 905170 sc-eQTL 3.95e-01 0.0677 0.0795 0.37 B L1
ENSG00000006555 TTC22 819708 sc-eQTL 2.41e-01 -0.0742 0.0631 0.37 CD4T L1
ENSG00000162402 USP24 405667 sc-eQTL 6.06e-01 -0.0233 0.0451 0.37 CD4T L1
ENSG00000243725 TTC4 905170 sc-eQTL 7.78e-01 0.0191 0.0679 0.37 CD4T L1
ENSG00000006555 TTC22 819708 sc-eQTL 8.75e-01 -0.0087 0.0551 0.37 CD8T L1
ENSG00000162402 USP24 405667 sc-eQTL 4.68e-01 0.0331 0.0456 0.37 CD8T L1
ENSG00000243725 TTC4 905170 sc-eQTL 2.12e-01 -0.0987 0.0788 0.37 CD8T L1
ENSG00000116133 DHCR24 733836 sc-eQTL 1.30e-01 -0.116 0.076 0.367 DC L1
ENSG00000162402 USP24 405667 sc-eQTL 4.19e-01 -0.0378 0.0467 0.367 DC L1
ENSG00000243725 TTC4 905170 sc-eQTL 3.75e-01 -0.0806 0.0908 0.367 DC L1
ENSG00000116133 DHCR24 733836 sc-eQTL 1.11e-02 -0.134 0.0524 0.37 Mono L1
ENSG00000162402 USP24 405667 sc-eQTL 9.61e-01 0.00239 0.0487 0.37 Mono L1
ENSG00000243725 TTC4 905170 sc-eQTL 6.87e-01 -0.0346 0.0857 0.37 Mono L1
ENSG00000006555 TTC22 819708 sc-eQTL 9.87e-01 0.00122 0.0731 0.369 NK L1
ENSG00000116133 DHCR24 733836 sc-eQTL 3.43e-01 -0.0699 0.0736 0.369 NK L1
ENSG00000162398 LEXM 814968 sc-eQTL 1.55e-01 0.0979 0.0686 0.369 NK L1
ENSG00000162402 USP24 405667 sc-eQTL 5.88e-01 0.0226 0.0418 0.369 NK L1
ENSG00000243725 TTC4 905170 sc-eQTL 9.55e-01 -0.00446 0.0791 0.369 NK L1
ENSG00000006555 TTC22 819708 sc-eQTL 6.80e-01 -0.0272 0.0658 0.37 Other_T L1
ENSG00000116133 DHCR24 733836 sc-eQTL 5.39e-01 -0.0314 0.051 0.37 Other_T L1
ENSG00000162402 USP24 405667 sc-eQTL 3.72e-01 0.054 0.0604 0.37 Other_T L1
ENSG00000243725 TTC4 905170 sc-eQTL 3.57e-01 -0.0759 0.0822 0.37 Other_T L1
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000006555 TTC22 819708 sc-eQTL 8.32e-01 -0.0144 0.0679 0.375 B_Activated L2
ENSG00000116133 DHCR24 733836 sc-eQTL 7.12e-02 -0.143 0.079 0.375 B_Activated L2
ENSG00000162402 USP24 405667 sc-eQTL 3.75e-01 -0.077 0.0866 0.375 B_Activated L2
ENSG00000243725 TTC4 905170 sc-eQTL 8.05e-01 0.0206 0.0831 0.375 B_Activated L2
ENSG00000006555 TTC22 819708 sc-eQTL 3.69e-02 -0.187 0.0892 0.367 B_Intermediate L2
ENSG00000116133 DHCR24 733836 sc-eQTL 8.38e-01 -0.0171 0.0836 0.367 B_Intermediate L2
ENSG00000162402 USP24 405667 sc-eQTL 6.89e-01 0.0265 0.066 0.367 B_Intermediate L2
ENSG00000243725 TTC4 905170 sc-eQTL 1.50e-01 0.122 0.0845 0.367 B_Intermediate L2
ENSG00000006555 TTC22 819708 sc-eQTL 9.89e-01 -0.00119 0.0853 0.364 B_Memory L2
ENSG00000116133 DHCR24 733836 sc-eQTL 4.83e-01 0.0594 0.0845 0.364 B_Memory L2
ENSG00000162402 USP24 405667 sc-eQTL 7.48e-01 0.0224 0.0698 0.364 B_Memory L2
ENSG00000243725 TTC4 905170 sc-eQTL 2.86e-01 -0.0954 0.0892 0.364 B_Memory L2
ENSG00000006555 TTC22 819708 sc-eQTL 9.03e-01 0.0109 0.0891 0.37 B_Naive1 L2
ENSG00000116133 DHCR24 733836 sc-eQTL 8.58e-01 -0.015 0.0835 0.37 B_Naive1 L2
ENSG00000162402 USP24 405667 sc-eQTL 8.05e-03 0.158 0.0589 0.37 B_Naive1 L2
ENSG00000243725 TTC4 905170 sc-eQTL 5.84e-01 0.0447 0.0815 0.37 B_Naive1 L2
ENSG00000006555 TTC22 819708 sc-eQTL 8.36e-01 -0.0184 0.0891 0.367 B_Naive2 L2
ENSG00000116133 DHCR24 733836 sc-eQTL 1.66e-02 -0.185 0.0765 0.367 B_Naive2 L2
ENSG00000162402 USP24 405667 sc-eQTL 7.81e-01 -0.0181 0.0651 0.367 B_Naive2 L2
ENSG00000243725 TTC4 905170 sc-eQTL 4.42e-01 -0.0734 0.0952 0.367 B_Naive2 L2
ENSG00000006555 TTC22 819708 sc-eQTL 6.28e-01 0.0409 0.0843 0.373 CD4_CTL L2
ENSG00000162402 USP24 405667 sc-eQTL 1.72e-01 0.112 0.0816 0.373 CD4_CTL L2
ENSG00000243725 TTC4 905170 sc-eQTL 6.30e-01 -0.0443 0.0917 0.373 CD4_CTL L2
ENSG00000006555 TTC22 819708 sc-eQTL 6.50e-01 -0.0338 0.0742 0.37 CD4_Naive L2
ENSG00000162402 USP24 405667 sc-eQTL 5.23e-02 -0.0943 0.0483 0.37 CD4_Naive L2
ENSG00000243725 TTC4 905170 sc-eQTL 8.52e-01 0.0139 0.0743 0.37 CD4_Naive L2
ENSG00000006555 TTC22 819708 sc-eQTL 1.39e-01 -0.117 0.0787 0.37 CD4_TCM L2
ENSG00000162402 USP24 405667 sc-eQTL 1.76e-01 0.0802 0.0591 0.37 CD4_TCM L2
ENSG00000243725 TTC4 905170 sc-eQTL 1.08e-01 0.137 0.0849 0.37 CD4_TCM L2
ENSG00000006555 TTC22 819708 sc-eQTL 3.42e-01 -0.0871 0.0915 0.37 CD4_TEM L2
ENSG00000162402 USP24 405667 sc-eQTL 5.06e-01 0.045 0.0675 0.37 CD4_TEM L2
ENSG00000243725 TTC4 905170 sc-eQTL 9.81e-01 0.00213 0.0894 0.37 CD4_TEM L2
ENSG00000006555 TTC22 819708 sc-eQTL 5.48e-01 -0.0438 0.0728 0.37 CD8_CTL L2
ENSG00000162402 USP24 405667 sc-eQTL 9.16e-01 -0.00598 0.0565 0.37 CD8_CTL L2
ENSG00000243725 TTC4 905170 sc-eQTL 4.63e-02 -0.168 0.0837 0.37 CD8_CTL L2
ENSG00000006555 TTC22 819708 sc-eQTL 5.03e-01 -0.0543 0.081 0.37 CD8_Naive L2
ENSG00000162402 USP24 405667 sc-eQTL 9.15e-01 0.00636 0.0592 0.37 CD8_Naive L2
ENSG00000243725 TTC4 905170 sc-eQTL 6.68e-01 -0.0372 0.0866 0.37 CD8_Naive L2
ENSG00000006555 TTC22 819708 sc-eQTL 3.19e-01 -0.0897 0.0899 0.366 CD8_TCM L2
ENSG00000162402 USP24 405667 sc-eQTL 9.30e-01 -0.00668 0.0761 0.366 CD8_TCM L2
ENSG00000243725 TTC4 905170 sc-eQTL 2.31e-01 -0.111 0.0922 0.366 CD8_TCM L2
ENSG00000006555 TTC22 819708 sc-eQTL 4.41e-01 -0.0675 0.0875 0.368 CD8_TEM L2
ENSG00000162402 USP24 405667 sc-eQTL 6.45e-01 0.0412 0.0893 0.368 CD8_TEM L2
ENSG00000243725 TTC4 905170 sc-eQTL 8.96e-01 0.0119 0.0908 0.368 CD8_TEM L2
ENSG00000006555 TTC22 819708 sc-eQTL 9.91e-01 0.000908 0.0773 0.372 MAIT L2
ENSG00000116133 DHCR24 733836 sc-eQTL 3.39e-01 0.0548 0.0571 0.372 MAIT L2
ENSG00000162402 USP24 405667 sc-eQTL 1.86e-01 0.0921 0.0694 0.372 MAIT L2
ENSG00000243725 TTC4 905170 sc-eQTL 8.63e-01 -0.0139 0.0805 0.372 MAIT L2
ENSG00000006555 TTC22 819708 sc-eQTL 7.54e-01 0.0284 0.0904 0.38 NK_CD56bright L2
ENSG00000116133 DHCR24 733836 sc-eQTL 7.69e-01 -0.0235 0.0798 0.38 NK_CD56bright L2
ENSG00000162398 LEXM 814968 sc-eQTL 6.11e-01 0.0417 0.0818 0.38 NK_CD56bright L2
ENSG00000162402 USP24 405667 sc-eQTL 3.31e-01 0.0684 0.0702 0.38 NK_CD56bright L2
ENSG00000243725 TTC4 905170 sc-eQTL 2.62e-01 -0.0996 0.0885 0.38 NK_CD56bright L2
ENSG00000006555 TTC22 819708 sc-eQTL 8.30e-01 -0.0158 0.0737 0.371 NK_CD56dim L2
ENSG00000116133 DHCR24 733836 sc-eQTL 2.48e-01 -0.0888 0.0767 0.371 NK_CD56dim L2
ENSG00000162398 LEXM 814968 sc-eQTL 9.80e-02 0.125 0.0751 0.371 NK_CD56dim L2
ENSG00000162402 USP24 405667 sc-eQTL 8.02e-01 -0.0121 0.048 0.371 NK_CD56dim L2
ENSG00000243725 TTC4 905170 sc-eQTL 5.27e-01 0.0521 0.0822 0.371 NK_CD56dim L2
ENSG00000006555 TTC22 819708 sc-eQTL 2.49e-01 0.103 0.089 0.372 NK_HLA L2
ENSG00000116133 DHCR24 733836 sc-eQTL 1.00e+00 -1.75e-05 0.0871 0.372 NK_HLA L2
ENSG00000162398 LEXM 814968 sc-eQTL 2.32e-01 0.101 0.0843 0.372 NK_HLA L2
ENSG00000162402 USP24 405667 sc-eQTL 9.67e-01 0.00256 0.0621 0.372 NK_HLA L2
ENSG00000243725 TTC4 905170 sc-eQTL 3.43e-01 -0.0878 0.0925 0.372 NK_HLA L2
ENSG00000006555 TTC22 819708 sc-eQTL 5.58e-01 -0.0464 0.079 0.371 NK_cytokine L2
ENSG00000116133 DHCR24 733836 sc-eQTL 4.54e-01 -0.0599 0.0799 0.371 NK_cytokine L2
ENSG00000162398 LEXM 814968 sc-eQTL 8.41e-01 -0.0168 0.0834 0.371 NK_cytokine L2
ENSG00000162402 USP24 405667 sc-eQTL 9.07e-01 0.00668 0.0569 0.371 NK_cytokine L2
ENSG00000243725 TTC4 905170 sc-eQTL 8.96e-01 0.011 0.0843 0.371 NK_cytokine L2
ENSG00000006555 TTC22 819708 sc-eQTL 9.21e-01 0.0103 0.103 0.374 PB L2
ENSG00000116133 DHCR24 733836 sc-eQTL 3.96e-01 0.0772 0.0906 0.374 PB L2
ENSG00000162402 USP24 405667 sc-eQTL 9.68e-01 0.00444 0.11 0.374 PB L2
ENSG00000243725 TTC4 905170 sc-eQTL 6.10e-01 0.0545 0.107 0.374 PB L2
ENSG00000006555 TTC22 819708 sc-eQTL 4.93e-01 0.0549 0.0798 0.37 Pro_T L2
ENSG00000116133 DHCR24 733836 sc-eQTL 5.63e-01 -0.0393 0.0678 0.37 Pro_T L2
ENSG00000162402 USP24 405667 sc-eQTL 6.25e-01 -0.0377 0.077 0.37 Pro_T L2
ENSG00000243725 TTC4 905170 sc-eQTL 8.43e-01 0.0168 0.0846 0.37 Pro_T L2
ENSG00000006555 TTC22 819708 sc-eQTL 6.20e-01 0.0402 0.081 0.37 Treg L2
ENSG00000162402 USP24 405667 sc-eQTL 3.63e-02 0.15 0.0714 0.37 Treg L2
ENSG00000243725 TTC4 905170 sc-eQTL 9.48e-02 -0.151 0.0903 0.37 Treg L2
ENSG00000116133 DHCR24 733836 sc-eQTL 7.92e-01 -0.0201 0.0762 0.371 cDC L2
ENSG00000162402 USP24 405667 sc-eQTL 8.30e-01 0.0202 0.0939 0.371 cDC L2
ENSG00000243725 TTC4 905170 sc-eQTL 2.37e-01 -0.114 0.096 0.371 cDC L2
ENSG00000116133 DHCR24 733836 sc-eQTL 4.81e-02 -0.101 0.051 0.37 cMono_IL1B L2
ENSG00000162402 USP24 405667 sc-eQTL 5.83e-01 0.032 0.0582 0.37 cMono_IL1B L2
ENSG00000243725 TTC4 905170 sc-eQTL 2.92e-01 -0.0939 0.0889 0.37 cMono_IL1B L2
ENSG00000116133 DHCR24 733836 sc-eQTL 1.42e-01 -0.0711 0.0482 0.37 cMono_S100A L2
ENSG00000162402 USP24 405667 sc-eQTL 5.48e-01 0.0433 0.0718 0.37 cMono_S100A L2
ENSG00000243725 TTC4 905170 sc-eQTL 7.63e-01 0.0272 0.09 0.37 cMono_S100A L2
ENSG00000006555 TTC22 819708 sc-eQTL 4.09e-02 -0.174 0.0841 0.364 gdT L2
ENSG00000116133 DHCR24 733836 sc-eQTL 9.58e-01 0.00504 0.0952 0.364 gdT L2
ENSG00000162402 USP24 405667 sc-eQTL 1.64e-01 -0.127 0.0908 0.364 gdT L2
ENSG00000243725 TTC4 905170 sc-eQTL 3.80e-01 -0.0941 0.107 0.364 gdT L2
ENSG00000116133 DHCR24 733836 sc-eQTL 2.97e-01 -0.0676 0.0646 0.367 intMono L2
ENSG00000162402 USP24 405667 sc-eQTL 3.20e-01 -0.0821 0.0823 0.367 intMono L2
ENSG00000243725 TTC4 905170 sc-eQTL 4.65e-01 -0.0642 0.0878 0.367 intMono L2
ENSG00000116133 DHCR24 733836 sc-eQTL 9.22e-01 -0.00631 0.0647 0.364 ncMono L2
ENSG00000162402 USP24 405667 sc-eQTL 4.19e-01 -0.0591 0.0729 0.364 ncMono L2
ENSG00000243725 TTC4 905170 sc-eQTL 8.67e-01 -0.0145 0.0864 0.364 ncMono L2
ENSG00000116133 DHCR24 733836 sc-eQTL 9.32e-02 -0.142 0.0838 0.359 pDC L2
ENSG00000162402 USP24 405667 sc-eQTL 9.02e-01 0.0084 0.0679 0.359 pDC L2
ENSG00000243725 TTC4 905170 sc-eQTL 6.64e-01 0.0466 0.107 0.359 pDC L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000006555 TTC22 819708 sc-eQTL 4.76e-02 -0.165 0.0828 0.37 B_Memory LOneK1K
ENSG00000116133 DHCR24 733836 sc-eQTL 8.61e-01 -0.0148 0.0838 0.37 B_Memory LOneK1K
ENSG00000162402 USP24 405667 sc-eQTL 5.39e-01 0.0368 0.0598 0.37 B_Memory LOneK1K
ENSG00000243725 TTC4 905170 sc-eQTL 1.16e-01 0.13 0.0821 0.37 B_Memory LOneK1K
ENSG00000006555 TTC22 819708 sc-eQTL 8.65e-01 -0.0152 0.0893 0.37 B_Naive LOneK1K
ENSG00000116133 DHCR24 733836 sc-eQTL 2.57e-01 -0.0912 0.0802 0.37 B_Naive LOneK1K
ENSG00000162402 USP24 405667 sc-eQTL 3.90e-02 0.117 0.0564 0.37 B_Naive LOneK1K
ENSG00000243725 TTC4 905170 sc-eQTL 9.21e-01 0.00846 0.0849 0.37 B_Naive LOneK1K
ENSG00000116133 DHCR24 733836 sc-eQTL 1.68e-02 -0.119 0.0493 0.37 CD14_Mono LOneK1K
ENSG00000162402 USP24 405667 sc-eQTL 4.39e-01 0.0423 0.0545 0.37 CD14_Mono LOneK1K
ENSG00000243725 TTC4 905170 sc-eQTL 3.70e-01 -0.0812 0.0904 0.37 CD14_Mono LOneK1K
ENSG00000116133 DHCR24 733836 sc-eQTL 3.61e-01 -0.0556 0.0607 0.371 CD16_Mono LOneK1K
ENSG00000162402 USP24 405667 sc-eQTL 1.60e-01 -0.096 0.0681 0.371 CD16_Mono LOneK1K
ENSG00000243725 TTC4 905170 sc-eQTL 8.04e-01 -0.0213 0.0858 0.371 CD16_Mono LOneK1K
ENSG00000006555 TTC22 819708 sc-eQTL 7.70e-01 -0.0211 0.072 0.371 NK_CD56dim LOneK1K
ENSG00000116133 DHCR24 733836 sc-eQTL 4.19e-01 -0.0608 0.0751 0.371 NK_CD56dim LOneK1K
ENSG00000162398 LEXM 814968 sc-eQTL 2.64e-01 0.0789 0.0705 0.371 NK_CD56dim LOneK1K
ENSG00000162402 USP24 405667 sc-eQTL 6.48e-01 0.0205 0.0448 0.371 NK_CD56dim LOneK1K
ENSG00000243725 TTC4 905170 sc-eQTL 7.00e-01 0.0308 0.0798 0.371 NK_CD56dim LOneK1K

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000234810 AL603840.1 291743 eQTL 1.53e-06 -0.148 0.0305 0.0 0.0 0.337

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000234810 AL603840.1 291743 1.33e-06 9.15e-07 3.32e-07 6.42e-07 3.37e-07 4.46e-07 1.24e-06 3.31e-07 1.38e-06 4.11e-07 1.39e-06 6.01e-07 1.99e-06 2.8e-07 5.08e-07 8.12e-07 7.74e-07 6.1e-07 6.18e-07 6.84e-07 4.57e-07 1.24e-06 9.22e-07 6.4e-07 1.97e-06 4.28e-07 7.61e-07 7.27e-07 1.24e-06 1.22e-06 5.77e-07 1.53e-07 2.17e-07 6.95e-07 5.2e-07 4.75e-07 4.54e-07 1.47e-07 3.43e-07 3.21e-07 2.88e-07 1.62e-06 5.45e-08 2.67e-08 1.66e-07 1.12e-07 2.37e-07 7.69e-08 1.04e-07