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Genes within 1Mb (chr1:55613958:CT:C):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000006555 TTC22 812635 sc-eQTL 2.14e-01 0.104 0.0836 0.62 B L1
ENSG00000116133 DHCR24 726763 sc-eQTL 3.91e-01 -0.068 0.0792 0.62 B L1
ENSG00000162402 USP24 398594 sc-eQTL 6.17e-01 0.0242 0.0484 0.62 B L1
ENSG00000243725 TTC4 898097 sc-eQTL 6.54e-01 -0.0364 0.0811 0.62 B L1
ENSG00000006555 TTC22 812635 sc-eQTL 1.51e-01 -0.0956 0.0663 0.62 CD4T L1
ENSG00000162402 USP24 398594 sc-eQTL 9.48e-01 -0.00307 0.0475 0.62 CD4T L1
ENSG00000243725 TTC4 898097 sc-eQTL 3.92e-01 0.0612 0.0713 0.62 CD4T L1
ENSG00000006555 TTC22 812635 sc-eQTL 7.04e-01 0.0217 0.0571 0.62 CD8T L1
ENSG00000162402 USP24 398594 sc-eQTL 3.18e-01 0.0472 0.0472 0.62 CD8T L1
ENSG00000243725 TTC4 898097 sc-eQTL 1.76e-01 -0.111 0.0817 0.62 CD8T L1
ENSG00000116133 DHCR24 726763 sc-eQTL 3.95e-01 -0.0652 0.0764 0.619 DC L1
ENSG00000162402 USP24 398594 sc-eQTL 6.55e-01 0.021 0.0469 0.619 DC L1
ENSG00000243725 TTC4 898097 sc-eQTL 3.22e-01 -0.0903 0.0909 0.619 DC L1
ENSG00000116133 DHCR24 726763 sc-eQTL 9.92e-02 0.0915 0.0552 0.62 Mono L1
ENSG00000162402 USP24 398594 sc-eQTL 4.68e-01 -0.037 0.0508 0.62 Mono L1
ENSG00000243725 TTC4 898097 sc-eQTL 5.49e-01 0.0537 0.0895 0.62 Mono L1
ENSG00000006555 TTC22 812635 sc-eQTL 3.62e-01 0.0694 0.0759 0.62 NK L1
ENSG00000116133 DHCR24 726763 sc-eQTL 7.23e-01 -0.0273 0.0768 0.62 NK L1
ENSG00000162398 LEXM 807895 sc-eQTL 7.64e-02 -0.127 0.0713 0.62 NK L1
ENSG00000162402 USP24 398594 sc-eQTL 1.60e-02 0.104 0.0429 0.62 NK L1
ENSG00000243725 TTC4 898097 sc-eQTL 4.51e-01 0.062 0.0822 0.62 NK L1
ENSG00000006555 TTC22 812635 sc-eQTL 4.67e-02 0.136 0.068 0.62 Other_T L1
ENSG00000116133 DHCR24 726763 sc-eQTL 1.03e-01 -0.0868 0.053 0.62 Other_T L1
ENSG00000162402 USP24 398594 sc-eQTL 6.12e-01 -0.032 0.0631 0.62 Other_T L1
ENSG00000243725 TTC4 898097 sc-eQTL 2.33e-01 0.103 0.0857 0.62 Other_T L1
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000006555 TTC22 812635 sc-eQTL 8.75e-01 0.0113 0.0714 0.625 B_Activated L2
ENSG00000116133 DHCR24 726763 sc-eQTL 1.27e-01 0.128 0.0833 0.625 B_Activated L2
ENSG00000162402 USP24 398594 sc-eQTL 7.26e-01 -0.0321 0.0912 0.625 B_Activated L2
ENSG00000243725 TTC4 898097 sc-eQTL 3.38e-01 -0.0838 0.0871 0.625 B_Activated L2
ENSG00000006555 TTC22 812635 sc-eQTL 4.98e-01 -0.0619 0.0912 0.618 B_Intermediate L2
ENSG00000116133 DHCR24 726763 sc-eQTL 4.29e-01 0.067 0.0846 0.618 B_Intermediate L2
ENSG00000162402 USP24 398594 sc-eQTL 1.78e-02 0.158 0.066 0.618 B_Intermediate L2
ENSG00000243725 TTC4 898097 sc-eQTL 6.02e-01 -0.045 0.086 0.618 B_Intermediate L2
ENSG00000006555 TTC22 812635 sc-eQTL 4.88e-01 0.0593 0.0854 0.621 B_Memory L2
ENSG00000116133 DHCR24 726763 sc-eQTL 2.45e-01 0.0987 0.0846 0.621 B_Memory L2
ENSG00000162402 USP24 398594 sc-eQTL 6.61e-02 -0.128 0.0694 0.621 B_Memory L2
ENSG00000243725 TTC4 898097 sc-eQTL 4.12e-01 -0.0737 0.0896 0.621 B_Memory L2
ENSG00000006555 TTC22 812635 sc-eQTL 1.03e-01 0.145 0.0888 0.62 B_Naive1 L2
ENSG00000116133 DHCR24 726763 sc-eQTL 1.15e-01 -0.132 0.0833 0.62 B_Naive1 L2
ENSG00000162402 USP24 398594 sc-eQTL 8.25e-01 -0.0133 0.06 0.62 B_Naive1 L2
ENSG00000243725 TTC4 898097 sc-eQTL 7.97e-01 0.0211 0.0818 0.62 B_Naive1 L2
ENSG00000006555 TTC22 812635 sc-eQTL 1.39e-01 0.132 0.0888 0.62 B_Naive2 L2
ENSG00000116133 DHCR24 726763 sc-eQTL 3.05e-01 -0.0798 0.0775 0.62 B_Naive2 L2
ENSG00000162402 USP24 398594 sc-eQTL 2.98e-01 0.0678 0.0651 0.62 B_Naive2 L2
ENSG00000243725 TTC4 898097 sc-eQTL 3.04e-01 0.0982 0.0953 0.62 B_Naive2 L2
ENSG00000006555 TTC22 812635 sc-eQTL 4.47e-01 0.0647 0.0849 0.616 CD4_CTL L2
ENSG00000162402 USP24 398594 sc-eQTL 3.60e-01 0.0756 0.0825 0.616 CD4_CTL L2
ENSG00000243725 TTC4 898097 sc-eQTL 8.82e-01 -0.0137 0.0925 0.616 CD4_CTL L2
ENSG00000006555 TTC22 812635 sc-eQTL 9.56e-02 -0.131 0.0782 0.62 CD4_Naive L2
ENSG00000162402 USP24 398594 sc-eQTL 9.91e-01 0.000554 0.0517 0.62 CD4_Naive L2
ENSG00000243725 TTC4 898097 sc-eQTL 1.57e-01 0.111 0.0784 0.62 CD4_Naive L2
ENSG00000006555 TTC22 812635 sc-eQTL 7.28e-01 0.0286 0.0822 0.62 CD4_TCM L2
ENSG00000162402 USP24 398594 sc-eQTL 4.40e-01 0.0476 0.0616 0.62 CD4_TCM L2
ENSG00000243725 TTC4 898097 sc-eQTL 8.63e-01 -0.0153 0.0889 0.62 CD4_TCM L2
ENSG00000006555 TTC22 812635 sc-eQTL 6.94e-01 -0.0372 0.0943 0.62 CD4_TEM L2
ENSG00000162402 USP24 398594 sc-eQTL 6.05e-01 -0.036 0.0695 0.62 CD4_TEM L2
ENSG00000243725 TTC4 898097 sc-eQTL 4.95e-01 -0.0628 0.0918 0.62 CD4_TEM L2
ENSG00000006555 TTC22 812635 sc-eQTL 9.66e-01 0.00312 0.0742 0.62 CD8_CTL L2
ENSG00000162402 USP24 398594 sc-eQTL 3.69e-01 -0.0517 0.0575 0.62 CD8_CTL L2
ENSG00000243725 TTC4 898097 sc-eQTL 1.38e-01 0.128 0.0857 0.62 CD8_CTL L2
ENSG00000006555 TTC22 812635 sc-eQTL 6.70e-01 0.0358 0.0839 0.62 CD8_Naive L2
ENSG00000162402 USP24 398594 sc-eQTL 3.86e-01 0.0532 0.0612 0.62 CD8_Naive L2
ENSG00000243725 TTC4 898097 sc-eQTL 7.26e-01 -0.0314 0.0897 0.62 CD8_Naive L2
ENSG00000006555 TTC22 812635 sc-eQTL 2.61e-02 0.2 0.0893 0.623 CD8_TCM L2
ENSG00000162402 USP24 398594 sc-eQTL 8.72e-02 0.13 0.0758 0.623 CD8_TCM L2
ENSG00000243725 TTC4 898097 sc-eQTL 7.09e-01 -0.0347 0.0929 0.623 CD8_TCM L2
ENSG00000006555 TTC22 812635 sc-eQTL 5.11e-01 -0.0592 0.09 0.619 CD8_TEM L2
ENSG00000162402 USP24 398594 sc-eQTL 4.39e-01 0.071 0.0917 0.619 CD8_TEM L2
ENSG00000243725 TTC4 898097 sc-eQTL 4.07e-01 -0.0774 0.0932 0.619 CD8_TEM L2
ENSG00000006555 TTC22 812635 sc-eQTL 9.99e-01 -0.000136 0.0812 0.615 MAIT L2
ENSG00000116133 DHCR24 726763 sc-eQTL 4.17e-02 0.122 0.0595 0.615 MAIT L2
ENSG00000162402 USP24 398594 sc-eQTL 7.04e-01 -0.0278 0.0731 0.615 MAIT L2
ENSG00000243725 TTC4 898097 sc-eQTL 3.31e-01 0.0821 0.0843 0.615 MAIT L2
ENSG00000006555 TTC22 812635 sc-eQTL 8.55e-01 0.0169 0.0922 0.624 NK_CD56bright L2
ENSG00000116133 DHCR24 726763 sc-eQTL 7.43e-01 0.0268 0.0814 0.624 NK_CD56bright L2
ENSG00000162398 LEXM 807895 sc-eQTL 9.42e-01 -0.00605 0.0835 0.624 NK_CD56bright L2
ENSG00000162402 USP24 398594 sc-eQTL 1.23e-01 0.111 0.0714 0.624 NK_CD56bright L2
ENSG00000243725 TTC4 898097 sc-eQTL 1.72e-02 0.214 0.0893 0.624 NK_CD56bright L2
ENSG00000006555 TTC22 812635 sc-eQTL 5.46e-01 -0.0458 0.0757 0.621 NK_CD56dim L2
ENSG00000116133 DHCR24 726763 sc-eQTL 8.99e-02 -0.134 0.0785 0.621 NK_CD56dim L2
ENSG00000162398 LEXM 807895 sc-eQTL 2.25e-02 -0.176 0.0767 0.621 NK_CD56dim L2
ENSG00000162402 USP24 398594 sc-eQTL 3.21e-02 0.105 0.0489 0.621 NK_CD56dim L2
ENSG00000243725 TTC4 898097 sc-eQTL 6.90e-01 0.0337 0.0845 0.621 NK_CD56dim L2
ENSG00000006555 TTC22 812635 sc-eQTL 3.38e-01 0.0856 0.0892 0.616 NK_HLA L2
ENSG00000116133 DHCR24 726763 sc-eQTL 4.46e-02 -0.175 0.0863 0.616 NK_HLA L2
ENSG00000162398 LEXM 807895 sc-eQTL 5.00e-01 -0.0572 0.0846 0.616 NK_HLA L2
ENSG00000162402 USP24 398594 sc-eQTL 9.71e-01 0.00229 0.0622 0.616 NK_HLA L2
ENSG00000243725 TTC4 898097 sc-eQTL 7.41e-01 -0.0307 0.0928 0.616 NK_HLA L2
ENSG00000006555 TTC22 812635 sc-eQTL 2.15e-01 0.102 0.0816 0.621 NK_cytokine L2
ENSG00000116133 DHCR24 726763 sc-eQTL 7.34e-01 0.0281 0.0828 0.621 NK_cytokine L2
ENSG00000162398 LEXM 807895 sc-eQTL 7.60e-01 0.0264 0.0863 0.621 NK_cytokine L2
ENSG00000162402 USP24 398594 sc-eQTL 1.31e-01 0.0887 0.0585 0.621 NK_cytokine L2
ENSG00000243725 TTC4 898097 sc-eQTL 6.71e-01 0.0371 0.0872 0.621 NK_cytokine L2
ENSG00000006555 TTC22 812635 sc-eQTL 6.76e-01 0.0459 0.11 0.611 PB L2
ENSG00000116133 DHCR24 726763 sc-eQTL 7.36e-01 -0.0328 0.0972 0.611 PB L2
ENSG00000162402 USP24 398594 sc-eQTL 3.64e-01 0.107 0.117 0.611 PB L2
ENSG00000243725 TTC4 898097 sc-eQTL 5.17e-02 -0.221 0.112 0.611 PB L2
ENSG00000006555 TTC22 812635 sc-eQTL 5.35e-01 0.0524 0.0843 0.622 Pro_T L2
ENSG00000116133 DHCR24 726763 sc-eQTL 1.34e-02 -0.176 0.0707 0.622 Pro_T L2
ENSG00000162402 USP24 398594 sc-eQTL 3.07e-01 0.0832 0.0812 0.622 Pro_T L2
ENSG00000243725 TTC4 898097 sc-eQTL 2.93e-01 -0.0941 0.0892 0.622 Pro_T L2
ENSG00000006555 TTC22 812635 sc-eQTL 7.45e-01 -0.0269 0.0825 0.62 Treg L2
ENSG00000162402 USP24 398594 sc-eQTL 9.69e-01 0.00286 0.0735 0.62 Treg L2
ENSG00000243725 TTC4 898097 sc-eQTL 1.32e-01 0.139 0.092 0.62 Treg L2
ENSG00000116133 DHCR24 726763 sc-eQTL 6.95e-01 -0.0294 0.0747 0.62 cDC L2
ENSG00000162402 USP24 398594 sc-eQTL 5.36e-01 0.057 0.092 0.62 cDC L2
ENSG00000243725 TTC4 898097 sc-eQTL 8.22e-01 0.0213 0.0944 0.62 cDC L2
ENSG00000116133 DHCR24 726763 sc-eQTL 4.34e-01 0.0421 0.0537 0.62 cMono_IL1B L2
ENSG00000162402 USP24 398594 sc-eQTL 3.96e-01 0.0517 0.0608 0.62 cMono_IL1B L2
ENSG00000243725 TTC4 898097 sc-eQTL 4.92e-01 0.0639 0.093 0.62 cMono_IL1B L2
ENSG00000116133 DHCR24 726763 sc-eQTL 1.06e-01 0.0828 0.051 0.62 cMono_S100A L2
ENSG00000162402 USP24 398594 sc-eQTL 6.19e-02 -0.142 0.0754 0.62 cMono_S100A L2
ENSG00000243725 TTC4 898097 sc-eQTL 7.63e-01 0.0288 0.0952 0.62 cMono_S100A L2
ENSG00000006555 TTC22 812635 sc-eQTL 2.52e-03 0.244 0.0792 0.621 gdT L2
ENSG00000116133 DHCR24 726763 sc-eQTL 8.76e-01 -0.0143 0.0912 0.621 gdT L2
ENSG00000162402 USP24 398594 sc-eQTL 3.15e-01 0.088 0.0873 0.621 gdT L2
ENSG00000243725 TTC4 898097 sc-eQTL 4.09e-01 0.0847 0.102 0.621 gdT L2
ENSG00000116133 DHCR24 726763 sc-eQTL 1.85e-01 -0.0913 0.0686 0.624 intMono L2
ENSG00000162402 USP24 398594 sc-eQTL 5.35e-01 0.0545 0.0877 0.624 intMono L2
ENSG00000243725 TTC4 898097 sc-eQTL 2.05e-01 -0.118 0.0931 0.624 intMono L2
ENSG00000116133 DHCR24 726763 sc-eQTL 3.30e-01 0.0652 0.0668 0.618 ncMono L2
ENSG00000162402 USP24 398594 sc-eQTL 8.24e-01 0.0168 0.0756 0.618 ncMono L2
ENSG00000243725 TTC4 898097 sc-eQTL 5.39e-01 0.055 0.0894 0.618 ncMono L2
ENSG00000116133 DHCR24 726763 sc-eQTL 1.23e-02 -0.201 0.0792 0.621 pDC L2
ENSG00000162402 USP24 398594 sc-eQTL 5.83e-01 0.0356 0.0648 0.621 pDC L2
ENSG00000243725 TTC4 898097 sc-eQTL 1.03e-01 -0.167 0.101 0.621 pDC L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000006555 TTC22 812635 sc-eQTL 8.39e-01 -0.0177 0.0868 0.62 B_Memory LOneK1K
ENSG00000116133 DHCR24 726763 sc-eQTL 5.42e-01 0.0532 0.0871 0.62 B_Memory LOneK1K
ENSG00000162402 USP24 398594 sc-eQTL 6.47e-01 0.0285 0.0622 0.62 B_Memory LOneK1K
ENSG00000243725 TTC4 898097 sc-eQTL 1.99e-01 -0.11 0.0856 0.62 B_Memory LOneK1K
ENSG00000006555 TTC22 812635 sc-eQTL 1.52e-02 0.22 0.0897 0.62 B_Naive LOneK1K
ENSG00000116133 DHCR24 726763 sc-eQTL 2.18e-01 -0.101 0.0816 0.62 B_Naive LOneK1K
ENSG00000162402 USP24 398594 sc-eQTL 5.72e-01 0.0328 0.058 0.62 B_Naive LOneK1K
ENSG00000243725 TTC4 898097 sc-eQTL 4.36e-01 0.0674 0.0863 0.62 B_Naive LOneK1K
ENSG00000116133 DHCR24 726763 sc-eQTL 1.74e-01 0.0721 0.0529 0.62 CD14_Mono LOneK1K
ENSG00000162402 USP24 398594 sc-eQTL 5.10e-01 -0.0383 0.058 0.62 CD14_Mono LOneK1K
ENSG00000243725 TTC4 898097 sc-eQTL 4.04e-01 0.0803 0.0961 0.62 CD14_Mono LOneK1K
ENSG00000116133 DHCR24 726763 sc-eQTL 8.65e-01 -0.011 0.0642 0.621 CD16_Mono LOneK1K
ENSG00000162402 USP24 398594 sc-eQTL 5.76e-01 0.0404 0.0722 0.621 CD16_Mono LOneK1K
ENSG00000243725 TTC4 898097 sc-eQTL 6.08e-01 -0.0465 0.0905 0.621 CD16_Mono LOneK1K
ENSG00000006555 TTC22 812635 sc-eQTL 5.05e-01 0.0498 0.0746 0.621 NK_CD56dim LOneK1K
ENSG00000116133 DHCR24 726763 sc-eQTL 4.28e-01 -0.0618 0.0779 0.621 NK_CD56dim LOneK1K
ENSG00000162398 LEXM 807895 sc-eQTL 8.67e-02 -0.125 0.0728 0.621 NK_CD56dim LOneK1K
ENSG00000162402 USP24 398594 sc-eQTL 1.53e-02 0.112 0.0458 0.621 NK_CD56dim LOneK1K
ENSG00000243725 TTC4 898097 sc-eQTL 7.84e-01 0.0227 0.0827 0.621 NK_CD56dim LOneK1K

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000116133 DHCR24 726763 eQTL 0.00403 -0.078 0.027 0.0022 0.0 0.401

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina