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Genes within 1Mb (chr1:55598968:G:T):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000006555 TTC22 797645 sc-eQTL 1.68e-01 0.119 0.0858 0.62 B L1
ENSG00000116133 DHCR24 711773 sc-eQTL 9.20e-01 0.00822 0.0815 0.62 B L1
ENSG00000162402 USP24 383604 sc-eQTL 7.71e-01 0.0145 0.0497 0.62 B L1
ENSG00000243725 TTC4 883107 sc-eQTL 7.27e-01 -0.0292 0.0833 0.62 B L1
ENSG00000006555 TTC22 797645 sc-eQTL 7.51e-01 0.0219 0.0688 0.62 CD4T L1
ENSG00000162402 USP24 383604 sc-eQTL 8.68e-01 -0.00816 0.049 0.62 CD4T L1
ENSG00000243725 TTC4 883107 sc-eQTL 2.67e-01 0.0819 0.0735 0.62 CD4T L1
ENSG00000006555 TTC22 797645 sc-eQTL 1.67e-01 0.0812 0.0585 0.62 CD8T L1
ENSG00000162402 USP24 383604 sc-eQTL 8.70e-01 -0.00795 0.0486 0.62 CD8T L1
ENSG00000243725 TTC4 883107 sc-eQTL 6.03e-01 -0.0439 0.0843 0.62 CD8T L1
ENSG00000116133 DHCR24 711773 sc-eQTL 5.07e-01 -0.0516 0.0777 0.624 DC L1
ENSG00000162402 USP24 383604 sc-eQTL 8.68e-01 -0.00791 0.0476 0.624 DC L1
ENSG00000243725 TTC4 883107 sc-eQTL 6.95e-01 -0.0363 0.0925 0.624 DC L1
ENSG00000116133 DHCR24 711773 sc-eQTL 5.09e-01 0.0375 0.0567 0.62 Mono L1
ENSG00000162402 USP24 383604 sc-eQTL 3.14e-01 -0.0523 0.0518 0.62 Mono L1
ENSG00000243725 TTC4 883107 sc-eQTL 1.27e-01 0.139 0.091 0.62 Mono L1
ENSG00000006555 TTC22 797645 sc-eQTL 7.54e-01 0.0245 0.0779 0.62 NK L1
ENSG00000116133 DHCR24 711773 sc-eQTL 5.86e-01 -0.0429 0.0786 0.62 NK L1
ENSG00000162398 LEXM 792905 sc-eQTL 6.90e-01 -0.0293 0.0735 0.62 NK L1
ENSG00000162402 USP24 383604 sc-eQTL 2.60e-01 0.0503 0.0445 0.62 NK L1
ENSG00000243725 TTC4 883107 sc-eQTL 4.98e-02 0.165 0.0836 0.62 NK L1
ENSG00000006555 TTC22 797645 sc-eQTL 4.48e-03 0.194 0.0676 0.62 Other_T L1
ENSG00000116133 DHCR24 711773 sc-eQTL 1.09e-01 -0.0855 0.0531 0.62 Other_T L1
ENSG00000162402 USP24 383604 sc-eQTL 6.88e-01 -0.0254 0.0633 0.62 Other_T L1
ENSG00000243725 TTC4 883107 sc-eQTL 3.41e-01 0.082 0.086 0.62 Other_T L1
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000006555 TTC22 797645 sc-eQTL 7.99e-01 0.0181 0.0709 0.628 B_Activated L2
ENSG00000116133 DHCR24 711773 sc-eQTL 1.27e-01 0.127 0.0827 0.628 B_Activated L2
ENSG00000162402 USP24 383604 sc-eQTL 6.63e-01 0.0395 0.0906 0.628 B_Activated L2
ENSG00000243725 TTC4 883107 sc-eQTL 4.00e-01 -0.073 0.0866 0.628 B_Activated L2
ENSG00000006555 TTC22 797645 sc-eQTL 9.48e-01 -0.00602 0.0927 0.618 B_Intermediate L2
ENSG00000116133 DHCR24 711773 sc-eQTL 6.39e-02 0.159 0.0853 0.618 B_Intermediate L2
ENSG00000162402 USP24 383604 sc-eQTL 2.76e-01 0.0739 0.0677 0.618 B_Intermediate L2
ENSG00000243725 TTC4 883107 sc-eQTL 2.14e-01 -0.108 0.087 0.618 B_Intermediate L2
ENSG00000006555 TTC22 797645 sc-eQTL 3.37e-01 0.0847 0.0879 0.623 B_Memory L2
ENSG00000116133 DHCR24 711773 sc-eQTL 6.60e-01 0.0385 0.0874 0.623 B_Memory L2
ENSG00000162402 USP24 383604 sc-eQTL 1.27e-01 -0.11 0.0717 0.623 B_Memory L2
ENSG00000243725 TTC4 883107 sc-eQTL 7.70e-01 -0.0271 0.0924 0.623 B_Memory L2
ENSG00000006555 TTC22 797645 sc-eQTL 1.96e-01 0.118 0.091 0.62 B_Naive1 L2
ENSG00000116133 DHCR24 711773 sc-eQTL 8.85e-01 -0.0124 0.0856 0.62 B_Naive1 L2
ENSG00000162402 USP24 383604 sc-eQTL 6.12e-01 0.0312 0.0614 0.62 B_Naive1 L2
ENSG00000243725 TTC4 883107 sc-eQTL 5.69e-01 -0.0476 0.0835 0.62 B_Naive1 L2
ENSG00000006555 TTC22 797645 sc-eQTL 8.08e-01 -0.0224 0.092 0.622 B_Naive2 L2
ENSG00000116133 DHCR24 711773 sc-eQTL 7.52e-01 -0.0253 0.0801 0.622 B_Naive2 L2
ENSG00000162402 USP24 383604 sc-eQTL 4.16e-01 0.0547 0.0672 0.622 B_Naive2 L2
ENSG00000243725 TTC4 883107 sc-eQTL 9.71e-02 0.163 0.0979 0.622 B_Naive2 L2
ENSG00000006555 TTC22 797645 sc-eQTL 6.05e-01 -0.0458 0.0884 0.614 CD4_CTL L2
ENSG00000162402 USP24 383604 sc-eQTL 2.90e-01 0.0909 0.0857 0.614 CD4_CTL L2
ENSG00000243725 TTC4 883107 sc-eQTL 4.53e-01 0.0722 0.0961 0.614 CD4_CTL L2
ENSG00000006555 TTC22 797645 sc-eQTL 6.51e-01 -0.0365 0.0805 0.62 CD4_Naive L2
ENSG00000162402 USP24 383604 sc-eQTL 9.83e-01 -0.00115 0.0529 0.62 CD4_Naive L2
ENSG00000243725 TTC4 883107 sc-eQTL 1.38e-01 0.119 0.0802 0.62 CD4_Naive L2
ENSG00000006555 TTC22 797645 sc-eQTL 2.24e-01 0.102 0.0838 0.62 CD4_TCM L2
ENSG00000162402 USP24 383604 sc-eQTL 4.96e-01 -0.043 0.063 0.62 CD4_TCM L2
ENSG00000243725 TTC4 883107 sc-eQTL 3.96e-01 0.0771 0.0907 0.62 CD4_TCM L2
ENSG00000006555 TTC22 797645 sc-eQTL 8.66e-01 0.0163 0.0968 0.62 CD4_TEM L2
ENSG00000162402 USP24 383604 sc-eQTL 7.48e-01 0.023 0.0714 0.62 CD4_TEM L2
ENSG00000243725 TTC4 883107 sc-eQTL 2.20e-01 -0.116 0.094 0.62 CD4_TEM L2
ENSG00000006555 TTC22 797645 sc-eQTL 2.86e-01 0.0808 0.0756 0.62 CD8_CTL L2
ENSG00000162402 USP24 383604 sc-eQTL 3.28e-01 -0.0575 0.0586 0.62 CD8_CTL L2
ENSG00000243725 TTC4 883107 sc-eQTL 2.91e-02 0.191 0.087 0.62 CD8_CTL L2
ENSG00000006555 TTC22 797645 sc-eQTL 1.26e-01 0.132 0.0859 0.62 CD8_Naive L2
ENSG00000162402 USP24 383604 sc-eQTL 9.14e-01 0.00681 0.0631 0.62 CD8_Naive L2
ENSG00000243725 TTC4 883107 sc-eQTL 6.40e-01 -0.0432 0.0923 0.62 CD8_Naive L2
ENSG00000006555 TTC22 797645 sc-eQTL 1.49e-01 0.134 0.0927 0.616 CD8_TCM L2
ENSG00000162402 USP24 383604 sc-eQTL 3.52e-01 0.0732 0.0785 0.616 CD8_TCM L2
ENSG00000243725 TTC4 883107 sc-eQTL 4.74e-01 0.0685 0.0955 0.616 CD8_TCM L2
ENSG00000006555 TTC22 797645 sc-eQTL 9.10e-01 -0.0103 0.0915 0.612 CD8_TEM L2
ENSG00000162402 USP24 383604 sc-eQTL 3.74e-01 -0.083 0.0931 0.612 CD8_TEM L2
ENSG00000243725 TTC4 883107 sc-eQTL 3.69e-01 -0.0851 0.0946 0.612 CD8_TEM L2
ENSG00000006555 TTC22 797645 sc-eQTL 3.28e-01 0.0803 0.0818 0.615 MAIT L2
ENSG00000116133 DHCR24 711773 sc-eQTL 1.26e-01 0.0927 0.0604 0.615 MAIT L2
ENSG00000162402 USP24 383604 sc-eQTL 7.61e-01 0.0224 0.0738 0.615 MAIT L2
ENSG00000243725 TTC4 883107 sc-eQTL 4.04e-01 0.0712 0.0852 0.615 MAIT L2
ENSG00000006555 TTC22 797645 sc-eQTL 5.65e-01 0.054 0.0936 0.62 NK_CD56bright L2
ENSG00000116133 DHCR24 711773 sc-eQTL 5.87e-01 0.045 0.0827 0.62 NK_CD56bright L2
ENSG00000162398 LEXM 792905 sc-eQTL 8.27e-01 0.0185 0.0848 0.62 NK_CD56bright L2
ENSG00000162402 USP24 383604 sc-eQTL 1.87e-01 0.0961 0.0727 0.62 NK_CD56bright L2
ENSG00000243725 TTC4 883107 sc-eQTL 2.56e-02 0.204 0.0909 0.62 NK_CD56bright L2
ENSG00000006555 TTC22 797645 sc-eQTL 3.90e-01 -0.0666 0.0773 0.619 NK_CD56dim L2
ENSG00000116133 DHCR24 711773 sc-eQTL 6.06e-02 -0.151 0.0801 0.619 NK_CD56dim L2
ENSG00000162398 LEXM 792905 sc-eQTL 5.03e-01 -0.0532 0.0793 0.619 NK_CD56dim L2
ENSG00000162402 USP24 383604 sc-eQTL 8.12e-01 0.012 0.0505 0.619 NK_CD56dim L2
ENSG00000243725 TTC4 883107 sc-eQTL 7.46e-02 0.154 0.0857 0.619 NK_CD56dim L2
ENSG00000006555 TTC22 797645 sc-eQTL 7.57e-01 0.0288 0.0928 0.61 NK_HLA L2
ENSG00000116133 DHCR24 711773 sc-eQTL 3.73e-01 -0.0807 0.0904 0.61 NK_HLA L2
ENSG00000162398 LEXM 792905 sc-eQTL 3.46e-01 -0.0829 0.0878 0.61 NK_HLA L2
ENSG00000162402 USP24 383604 sc-eQTL 8.63e-01 -0.0111 0.0646 0.61 NK_HLA L2
ENSG00000243725 TTC4 883107 sc-eQTL 4.96e-01 -0.0657 0.0963 0.61 NK_HLA L2
ENSG00000006555 TTC22 797645 sc-eQTL 4.20e-01 0.0677 0.0838 0.619 NK_cytokine L2
ENSG00000116133 DHCR24 711773 sc-eQTL 6.31e-01 0.0408 0.0848 0.619 NK_cytokine L2
ENSG00000162398 LEXM 792905 sc-eQTL 2.93e-01 0.0931 0.0882 0.619 NK_cytokine L2
ENSG00000162402 USP24 383604 sc-eQTL 9.73e-02 0.0998 0.0599 0.619 NK_cytokine L2
ENSG00000243725 TTC4 883107 sc-eQTL 6.59e-02 0.164 0.0887 0.619 NK_cytokine L2
ENSG00000006555 TTC22 797645 sc-eQTL 3.29e-01 0.105 0.107 0.63 PB L2
ENSG00000116133 DHCR24 711773 sc-eQTL 2.13e-01 -0.118 0.0946 0.63 PB L2
ENSG00000162402 USP24 383604 sc-eQTL 7.52e-01 0.0365 0.115 0.63 PB L2
ENSG00000243725 TTC4 883107 sc-eQTL 3.10e-01 -0.114 0.111 0.63 PB L2
ENSG00000006555 TTC22 797645 sc-eQTL 6.35e-01 -0.0404 0.085 0.622 Pro_T L2
ENSG00000116133 DHCR24 711773 sc-eQTL 8.37e-02 -0.125 0.0717 0.622 Pro_T L2
ENSG00000162402 USP24 383604 sc-eQTL 6.85e-01 -0.0333 0.082 0.622 Pro_T L2
ENSG00000243725 TTC4 883107 sc-eQTL 7.94e-01 -0.0235 0.09 0.622 Pro_T L2
ENSG00000006555 TTC22 797645 sc-eQTL 7.04e-01 0.0327 0.0861 0.62 Treg L2
ENSG00000162402 USP24 383604 sc-eQTL 6.03e-01 -0.04 0.0767 0.62 Treg L2
ENSG00000243725 TTC4 883107 sc-eQTL 3.54e-02 0.202 0.0957 0.62 Treg L2
ENSG00000116133 DHCR24 711773 sc-eQTL 8.85e-01 0.0112 0.0769 0.624 cDC L2
ENSG00000162402 USP24 383604 sc-eQTL 5.59e-01 -0.0555 0.0947 0.624 cDC L2
ENSG00000243725 TTC4 883107 sc-eQTL 6.83e-01 -0.0398 0.0972 0.624 cDC L2
ENSG00000116133 DHCR24 711773 sc-eQTL 2.47e-01 0.0626 0.0539 0.62 cMono_IL1B L2
ENSG00000162402 USP24 383604 sc-eQTL 4.91e-01 -0.0422 0.0611 0.62 cMono_IL1B L2
ENSG00000243725 TTC4 883107 sc-eQTL 9.50e-01 -0.00592 0.0936 0.62 cMono_IL1B L2
ENSG00000116133 DHCR24 711773 sc-eQTL 6.93e-01 0.0202 0.0512 0.62 cMono_S100A L2
ENSG00000162402 USP24 383604 sc-eQTL 2.90e-01 -0.0804 0.0758 0.62 cMono_S100A L2
ENSG00000243725 TTC4 883107 sc-eQTL 1.39e-01 0.141 0.0947 0.62 cMono_S100A L2
ENSG00000006555 TTC22 797645 sc-eQTL 8.74e-05 0.333 0.0824 0.627 gdT L2
ENSG00000116133 DHCR24 711773 sc-eQTL 2.91e-01 -0.102 0.0965 0.627 gdT L2
ENSG00000162402 USP24 383604 sc-eQTL 9.23e-01 -0.00905 0.0931 0.627 gdT L2
ENSG00000243725 TTC4 883107 sc-eQTL 3.15e-01 0.11 0.109 0.627 gdT L2
ENSG00000116133 DHCR24 711773 sc-eQTL 1.28e-01 -0.106 0.0695 0.62 intMono L2
ENSG00000162402 USP24 383604 sc-eQTL 9.01e-01 0.0111 0.089 0.62 intMono L2
ENSG00000243725 TTC4 883107 sc-eQTL 7.46e-01 0.0307 0.0948 0.62 intMono L2
ENSG00000116133 DHCR24 711773 sc-eQTL 5.63e-01 -0.0397 0.0685 0.624 ncMono L2
ENSG00000162402 USP24 383604 sc-eQTL 2.88e-01 0.0822 0.0771 0.624 ncMono L2
ENSG00000243725 TTC4 883107 sc-eQTL 6.10e-01 0.0468 0.0915 0.624 ncMono L2
ENSG00000116133 DHCR24 711773 sc-eQTL 1.70e-01 -0.114 0.0826 0.63 pDC L2
ENSG00000162402 USP24 383604 sc-eQTL 7.39e-01 0.0222 0.0667 0.63 pDC L2
ENSG00000243725 TTC4 883107 sc-eQTL 8.23e-01 -0.0236 0.105 0.63 pDC L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000006555 TTC22 797645 sc-eQTL 4.08e-01 0.0729 0.088 0.62 B_Memory LOneK1K
ENSG00000116133 DHCR24 711773 sc-eQTL 8.65e-02 0.151 0.0878 0.62 B_Memory LOneK1K
ENSG00000162402 USP24 383604 sc-eQTL 6.85e-01 0.0256 0.0631 0.62 B_Memory LOneK1K
ENSG00000243725 TTC4 883107 sc-eQTL 9.03e-02 -0.147 0.0865 0.62 B_Memory LOneK1K
ENSG00000006555 TTC22 797645 sc-eQTL 2.54e-01 0.105 0.092 0.62 B_Naive LOneK1K
ENSG00000116133 DHCR24 711773 sc-eQTL 8.97e-01 -0.0108 0.0832 0.62 B_Naive LOneK1K
ENSG00000162402 USP24 383604 sc-eQTL 4.65e-01 0.0431 0.0588 0.62 B_Naive LOneK1K
ENSG00000243725 TTC4 883107 sc-eQTL 5.31e-01 0.0549 0.0876 0.62 B_Naive LOneK1K
ENSG00000116133 DHCR24 711773 sc-eQTL 2.14e-01 0.0661 0.053 0.62 CD14_Mono LOneK1K
ENSG00000162402 USP24 383604 sc-eQTL 6.58e-02 -0.107 0.0577 0.62 CD14_Mono LOneK1K
ENSG00000243725 TTC4 883107 sc-eQTL 2.54e-01 0.11 0.0961 0.62 CD14_Mono LOneK1K
ENSG00000116133 DHCR24 711773 sc-eQTL 1.52e-01 -0.0938 0.0652 0.623 CD16_Mono LOneK1K
ENSG00000162402 USP24 383604 sc-eQTL 4.11e-01 0.0607 0.0737 0.623 CD16_Mono LOneK1K
ENSG00000243725 TTC4 883107 sc-eQTL 9.25e-01 -0.00869 0.0925 0.623 CD16_Mono LOneK1K
ENSG00000006555 TTC22 797645 sc-eQTL 8.69e-01 -0.0126 0.0763 0.619 NK_CD56dim LOneK1K
ENSG00000116133 DHCR24 711773 sc-eQTL 4.00e-01 -0.067 0.0795 0.619 NK_CD56dim LOneK1K
ENSG00000162398 LEXM 792905 sc-eQTL 6.24e-01 -0.0368 0.0748 0.619 NK_CD56dim LOneK1K
ENSG00000162402 USP24 383604 sc-eQTL 1.75e-01 0.0643 0.0473 0.619 NK_CD56dim LOneK1K
ENSG00000243725 TTC4 883107 sc-eQTL 9.38e-02 0.141 0.0839 0.619 NK_CD56dim LOneK1K

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000116133 DHCR24 711773 eQTL 0.0389 -0.0567 0.0274 0.0 0.0 0.388

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina