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Genes within 1Mb (chr1:55596431:T:C):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000006555 TTC22 795108 sc-eQTL 1.87e-01 0.113 0.0853 0.618 B L1
ENSG00000116133 DHCR24 709236 sc-eQTL 9.05e-01 0.00964 0.081 0.618 B L1
ENSG00000162402 USP24 381067 sc-eQTL 7.53e-01 0.0156 0.0494 0.618 B L1
ENSG00000243725 TTC4 880570 sc-eQTL 7.33e-01 -0.0283 0.0828 0.618 B L1
ENSG00000006555 TTC22 795108 sc-eQTL 6.98e-01 0.0265 0.0682 0.618 CD4T L1
ENSG00000162402 USP24 381067 sc-eQTL 9.16e-01 -0.00511 0.0486 0.618 CD4T L1
ENSG00000243725 TTC4 880570 sc-eQTL 3.14e-01 0.0736 0.073 0.618 CD4T L1
ENSG00000006555 TTC22 795108 sc-eQTL 1.66e-01 0.081 0.0583 0.618 CD8T L1
ENSG00000162402 USP24 381067 sc-eQTL 8.40e-01 -0.00981 0.0484 0.618 CD8T L1
ENSG00000243725 TTC4 880570 sc-eQTL 5.66e-01 -0.0483 0.0839 0.618 CD8T L1
ENSG00000116133 DHCR24 709236 sc-eQTL 5.97e-01 -0.0409 0.0772 0.622 DC L1
ENSG00000162402 USP24 381067 sc-eQTL 8.78e-01 -0.00725 0.0473 0.622 DC L1
ENSG00000243725 TTC4 880570 sc-eQTL 6.28e-01 -0.0446 0.0919 0.622 DC L1
ENSG00000116133 DHCR24 709236 sc-eQTL 5.34e-01 0.0351 0.0564 0.618 Mono L1
ENSG00000162402 USP24 381067 sc-eQTL 4.21e-01 -0.0416 0.0516 0.618 Mono L1
ENSG00000243725 TTC4 880570 sc-eQTL 1.45e-01 0.132 0.0904 0.618 Mono L1
ENSG00000006555 TTC22 795108 sc-eQTL 8.32e-01 0.0164 0.0775 0.618 NK L1
ENSG00000116133 DHCR24 709236 sc-eQTL 5.87e-01 -0.0426 0.0782 0.618 NK L1
ENSG00000162398 LEXM 790368 sc-eQTL 6.66e-01 -0.0316 0.0731 0.618 NK L1
ENSG00000162402 USP24 381067 sc-eQTL 3.22e-01 0.0439 0.0442 0.618 NK L1
ENSG00000243725 TTC4 880570 sc-eQTL 3.91e-02 0.172 0.083 0.618 NK L1
ENSG00000006555 TTC22 795108 sc-eQTL 5.43e-03 0.189 0.0673 0.618 Other_T L1
ENSG00000116133 DHCR24 709236 sc-eQTL 1.05e-01 -0.0861 0.0528 0.618 Other_T L1
ENSG00000162402 USP24 381067 sc-eQTL 6.92e-01 -0.025 0.0629 0.618 Other_T L1
ENSG00000243725 TTC4 880570 sc-eQTL 3.22e-01 0.085 0.0855 0.618 Other_T L1
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000006555 TTC22 795108 sc-eQTL 7.87e-01 0.019 0.0702 0.625 B_Activated L2
ENSG00000116133 DHCR24 709236 sc-eQTL 1.06e-01 0.133 0.0819 0.625 B_Activated L2
ENSG00000162402 USP24 381067 sc-eQTL 5.28e-01 0.0568 0.0897 0.625 B_Activated L2
ENSG00000243725 TTC4 880570 sc-eQTL 3.58e-01 -0.0791 0.0858 0.625 B_Activated L2
ENSG00000006555 TTC22 795108 sc-eQTL 9.20e-01 -0.00926 0.092 0.616 B_Intermediate L2
ENSG00000116133 DHCR24 709236 sc-eQTL 7.47e-02 0.152 0.0847 0.616 B_Intermediate L2
ENSG00000162402 USP24 381067 sc-eQTL 2.42e-01 0.0788 0.0671 0.616 B_Intermediate L2
ENSG00000243725 TTC4 880570 sc-eQTL 1.59e-01 -0.122 0.0863 0.616 B_Intermediate L2
ENSG00000006555 TTC22 795108 sc-eQTL 3.66e-01 0.0791 0.0873 0.621 B_Memory L2
ENSG00000116133 DHCR24 709236 sc-eQTL 6.97e-01 0.0339 0.0868 0.621 B_Memory L2
ENSG00000162402 USP24 381067 sc-eQTL 1.63e-01 -0.0997 0.0713 0.621 B_Memory L2
ENSG00000243725 TTC4 880570 sc-eQTL 8.68e-01 -0.0152 0.0918 0.621 B_Memory L2
ENSG00000006555 TTC22 795108 sc-eQTL 2.16e-01 0.112 0.0904 0.618 B_Naive1 L2
ENSG00000116133 DHCR24 709236 sc-eQTL 9.54e-01 -0.00494 0.0851 0.618 B_Naive1 L2
ENSG00000162402 USP24 381067 sc-eQTL 6.41e-01 0.0285 0.061 0.618 B_Naive1 L2
ENSG00000243725 TTC4 880570 sc-eQTL 5.50e-01 -0.0497 0.083 0.618 B_Naive1 L2
ENSG00000006555 TTC22 795108 sc-eQTL 8.03e-01 -0.0229 0.0916 0.62 B_Naive2 L2
ENSG00000116133 DHCR24 709236 sc-eQTL 8.01e-01 -0.0201 0.0797 0.62 B_Naive2 L2
ENSG00000162402 USP24 381067 sc-eQTL 4.45e-01 0.0511 0.0669 0.62 B_Naive2 L2
ENSG00000243725 TTC4 880570 sc-eQTL 7.28e-02 0.175 0.0973 0.62 B_Naive2 L2
ENSG00000006555 TTC22 795108 sc-eQTL 5.68e-01 -0.0502 0.0877 0.611 CD4_CTL L2
ENSG00000162402 USP24 381067 sc-eQTL 2.82e-01 0.0918 0.0851 0.611 CD4_CTL L2
ENSG00000243725 TTC4 880570 sc-eQTL 4.72e-01 0.0688 0.0954 0.611 CD4_CTL L2
ENSG00000006555 TTC22 795108 sc-eQTL 6.97e-01 -0.0312 0.0799 0.618 CD4_Naive L2
ENSG00000162402 USP24 381067 sc-eQTL 9.61e-01 0.00254 0.0525 0.618 CD4_Naive L2
ENSG00000243725 TTC4 880570 sc-eQTL 1.73e-01 0.109 0.0797 0.618 CD4_Naive L2
ENSG00000006555 TTC22 795108 sc-eQTL 2.43e-01 0.0975 0.0832 0.618 CD4_TCM L2
ENSG00000162402 USP24 381067 sc-eQTL 4.86e-01 -0.0437 0.0625 0.618 CD4_TCM L2
ENSG00000243725 TTC4 880570 sc-eQTL 3.78e-01 0.0795 0.09 0.618 CD4_TCM L2
ENSG00000006555 TTC22 795108 sc-eQTL 8.36e-01 0.0199 0.0962 0.618 CD4_TEM L2
ENSG00000162402 USP24 381067 sc-eQTL 7.78e-01 0.02 0.0709 0.618 CD4_TEM L2
ENSG00000243725 TTC4 880570 sc-eQTL 2.31e-01 -0.112 0.0934 0.618 CD4_TEM L2
ENSG00000006555 TTC22 795108 sc-eQTL 2.40e-01 0.0885 0.0751 0.618 CD8_CTL L2
ENSG00000162402 USP24 381067 sc-eQTL 3.25e-01 -0.0575 0.0583 0.618 CD8_CTL L2
ENSG00000243725 TTC4 880570 sc-eQTL 4.82e-02 0.172 0.0866 0.618 CD8_CTL L2
ENSG00000006555 TTC22 795108 sc-eQTL 1.46e-01 0.125 0.0854 0.618 CD8_Naive L2
ENSG00000162402 USP24 381067 sc-eQTL 9.99e-01 4.23e-05 0.0627 0.618 CD8_Naive L2
ENSG00000243725 TTC4 880570 sc-eQTL 6.86e-01 -0.0371 0.0917 0.618 CD8_Naive L2
ENSG00000006555 TTC22 795108 sc-eQTL 1.36e-01 0.138 0.0921 0.613 CD8_TCM L2
ENSG00000162402 USP24 381067 sc-eQTL 2.55e-01 0.0889 0.0779 0.613 CD8_TCM L2
ENSG00000243725 TTC4 880570 sc-eQTL 5.21e-01 0.0611 0.095 0.613 CD8_TCM L2
ENSG00000006555 TTC22 795108 sc-eQTL 8.24e-01 -0.0202 0.0908 0.61 CD8_TEM L2
ENSG00000162402 USP24 381067 sc-eQTL 3.75e-01 -0.0821 0.0924 0.61 CD8_TEM L2
ENSG00000243725 TTC4 880570 sc-eQTL 2.81e-01 -0.101 0.0938 0.61 CD8_TEM L2
ENSG00000006555 TTC22 795108 sc-eQTL 3.32e-01 0.0791 0.0813 0.613 MAIT L2
ENSG00000116133 DHCR24 709236 sc-eQTL 1.78e-01 0.0812 0.06 0.613 MAIT L2
ENSG00000162402 USP24 381067 sc-eQTL 7.16e-01 0.0267 0.0733 0.613 MAIT L2
ENSG00000243725 TTC4 880570 sc-eQTL 3.71e-01 0.0759 0.0846 0.613 MAIT L2
ENSG00000006555 TTC22 795108 sc-eQTL 5.89e-01 0.0504 0.093 0.618 NK_CD56bright L2
ENSG00000116133 DHCR24 709236 sc-eQTL 6.54e-01 0.037 0.0822 0.618 NK_CD56bright L2
ENSG00000162398 LEXM 790368 sc-eQTL 8.17e-01 0.0195 0.0843 0.618 NK_CD56bright L2
ENSG00000162402 USP24 381067 sc-eQTL 2.51e-01 0.0832 0.0723 0.618 NK_CD56bright L2
ENSG00000243725 TTC4 880570 sc-eQTL 2.40e-02 0.205 0.0903 0.618 NK_CD56bright L2
ENSG00000006555 TTC22 795108 sc-eQTL 3.24e-01 -0.0758 0.0768 0.616 NK_CD56dim L2
ENSG00000116133 DHCR24 709236 sc-eQTL 5.93e-02 -0.151 0.0796 0.616 NK_CD56dim L2
ENSG00000162398 LEXM 790368 sc-eQTL 4.87e-01 -0.0549 0.0788 0.616 NK_CD56dim L2
ENSG00000162402 USP24 381067 sc-eQTL 8.90e-01 0.00695 0.0501 0.616 NK_CD56dim L2
ENSG00000243725 TTC4 880570 sc-eQTL 5.24e-02 0.166 0.0851 0.616 NK_CD56dim L2
ENSG00000006555 TTC22 795108 sc-eQTL 7.11e-01 0.0342 0.0921 0.607 NK_HLA L2
ENSG00000116133 DHCR24 709236 sc-eQTL 4.34e-01 -0.0704 0.0898 0.607 NK_HLA L2
ENSG00000162398 LEXM 790368 sc-eQTL 3.39e-01 -0.0835 0.0871 0.607 NK_HLA L2
ENSG00000162402 USP24 381067 sc-eQTL 8.25e-01 -0.0142 0.0641 0.607 NK_HLA L2
ENSG00000243725 TTC4 880570 sc-eQTL 4.84e-01 -0.0671 0.0956 0.607 NK_HLA L2
ENSG00000006555 TTC22 795108 sc-eQTL 4.77e-01 0.0592 0.0832 0.616 NK_cytokine L2
ENSG00000116133 DHCR24 709236 sc-eQTL 6.44e-01 0.039 0.0843 0.616 NK_cytokine L2
ENSG00000162398 LEXM 790368 sc-eQTL 2.68e-01 0.0973 0.0876 0.616 NK_cytokine L2
ENSG00000162402 USP24 381067 sc-eQTL 1.05e-01 0.097 0.0595 0.616 NK_cytokine L2
ENSG00000243725 TTC4 880570 sc-eQTL 6.45e-02 0.164 0.0881 0.616 NK_cytokine L2
ENSG00000006555 TTC22 795108 sc-eQTL 3.29e-01 0.105 0.107 0.63 PB L2
ENSG00000116133 DHCR24 709236 sc-eQTL 2.13e-01 -0.118 0.0946 0.63 PB L2
ENSG00000162402 USP24 381067 sc-eQTL 7.52e-01 0.0365 0.115 0.63 PB L2
ENSG00000243725 TTC4 880570 sc-eQTL 3.10e-01 -0.114 0.111 0.63 PB L2
ENSG00000006555 TTC22 795108 sc-eQTL 7.10e-01 -0.0315 0.0845 0.62 Pro_T L2
ENSG00000116133 DHCR24 709236 sc-eQTL 9.57e-02 -0.119 0.0714 0.62 Pro_T L2
ENSG00000162402 USP24 381067 sc-eQTL 6.22e-01 -0.0402 0.0815 0.62 Pro_T L2
ENSG00000243725 TTC4 880570 sc-eQTL 8.82e-01 -0.0133 0.0895 0.62 Pro_T L2
ENSG00000006555 TTC22 795108 sc-eQTL 6.98e-01 0.0333 0.0856 0.618 Treg L2
ENSG00000162402 USP24 381067 sc-eQTL 6.34e-01 -0.0364 0.0762 0.618 Treg L2
ENSG00000243725 TTC4 880570 sc-eQTL 4.29e-02 0.194 0.0951 0.618 Treg L2
ENSG00000116133 DHCR24 709236 sc-eQTL 8.07e-01 0.0187 0.0763 0.622 cDC L2
ENSG00000162402 USP24 381067 sc-eQTL 5.94e-01 -0.0502 0.094 0.622 cDC L2
ENSG00000243725 TTC4 880570 sc-eQTL 6.45e-01 -0.0445 0.0964 0.622 cDC L2
ENSG00000116133 DHCR24 709236 sc-eQTL 2.81e-01 0.0579 0.0536 0.618 cMono_IL1B L2
ENSG00000162402 USP24 381067 sc-eQTL 5.96e-01 -0.0323 0.0608 0.618 cMono_IL1B L2
ENSG00000243725 TTC4 880570 sc-eQTL 9.55e-01 -0.00531 0.093 0.618 cMono_IL1B L2
ENSG00000116133 DHCR24 709236 sc-eQTL 6.23e-01 0.0251 0.0509 0.618 cMono_S100A L2
ENSG00000162402 USP24 381067 sc-eQTL 4.06e-01 -0.0629 0.0754 0.618 cMono_S100A L2
ENSG00000243725 TTC4 880570 sc-eQTL 1.55e-01 0.134 0.0941 0.618 cMono_S100A L2
ENSG00000006555 TTC22 795108 sc-eQTL 1.16e-04 0.325 0.0819 0.624 gdT L2
ENSG00000116133 DHCR24 709236 sc-eQTL 2.82e-01 -0.103 0.0958 0.624 gdT L2
ENSG00000162402 USP24 381067 sc-eQTL 9.12e-01 -0.0103 0.0924 0.624 gdT L2
ENSG00000243725 TTC4 880570 sc-eQTL 3.06e-01 0.111 0.108 0.624 gdT L2
ENSG00000116133 DHCR24 709236 sc-eQTL 1.56e-01 -0.0983 0.069 0.618 intMono L2
ENSG00000162402 USP24 381067 sc-eQTL 9.33e-01 0.00745 0.0884 0.618 intMono L2
ENSG00000243725 TTC4 880570 sc-eQTL 8.39e-01 0.0191 0.0941 0.618 intMono L2
ENSG00000116133 DHCR24 709236 sc-eQTL 4.90e-01 -0.0471 0.0681 0.622 ncMono L2
ENSG00000162402 USP24 381067 sc-eQTL 2.43e-01 0.0896 0.0766 0.622 ncMono L2
ENSG00000243725 TTC4 880570 sc-eQTL 6.22e-01 0.0449 0.0909 0.622 ncMono L2
ENSG00000116133 DHCR24 709236 sc-eQTL 1.94e-01 -0.107 0.0818 0.627 pDC L2
ENSG00000162402 USP24 381067 sc-eQTL 7.16e-01 0.024 0.066 0.627 pDC L2
ENSG00000243725 TTC4 880570 sc-eQTL 8.01e-01 -0.0264 0.104 0.627 pDC L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000006555 TTC22 795108 sc-eQTL 4.43e-01 0.0672 0.0874 0.618 B_Memory LOneK1K
ENSG00000116133 DHCR24 709236 sc-eQTL 9.71e-02 0.145 0.0872 0.618 B_Memory LOneK1K
ENSG00000162402 USP24 381067 sc-eQTL 6.02e-01 0.0328 0.0627 0.618 B_Memory LOneK1K
ENSG00000243725 TTC4 880570 sc-eQTL 7.26e-02 -0.155 0.0859 0.618 B_Memory LOneK1K
ENSG00000006555 TTC22 795108 sc-eQTL 2.76e-01 0.0999 0.0915 0.618 B_Naive LOneK1K
ENSG00000116133 DHCR24 709236 sc-eQTL 9.81e-01 -0.00197 0.0827 0.618 B_Naive LOneK1K
ENSG00000162402 USP24 381067 sc-eQTL 4.92e-01 0.0403 0.0585 0.618 B_Naive LOneK1K
ENSG00000243725 TTC4 880570 sc-eQTL 4.78e-01 0.062 0.0871 0.618 B_Naive LOneK1K
ENSG00000116133 DHCR24 709236 sc-eQTL 2.25e-01 0.0642 0.0527 0.618 CD14_Mono LOneK1K
ENSG00000162402 USP24 381067 sc-eQTL 1.06e-01 -0.0931 0.0574 0.618 CD14_Mono LOneK1K
ENSG00000243725 TTC4 880570 sc-eQTL 2.64e-01 0.107 0.0955 0.618 CD14_Mono LOneK1K
ENSG00000116133 DHCR24 709236 sc-eQTL 1.41e-01 -0.0959 0.0649 0.621 CD16_Mono LOneK1K
ENSG00000162402 USP24 381067 sc-eQTL 3.83e-01 0.0641 0.0733 0.621 CD16_Mono LOneK1K
ENSG00000243725 TTC4 880570 sc-eQTL 8.79e-01 -0.014 0.092 0.621 CD16_Mono LOneK1K
ENSG00000006555 TTC22 795108 sc-eQTL 7.97e-01 -0.0195 0.0758 0.616 NK_CD56dim LOneK1K
ENSG00000116133 DHCR24 709236 sc-eQTL 4.11e-01 -0.0652 0.079 0.616 NK_CD56dim LOneK1K
ENSG00000162398 LEXM 790368 sc-eQTL 5.97e-01 -0.0394 0.0744 0.616 NK_CD56dim LOneK1K
ENSG00000162402 USP24 381067 sc-eQTL 2.12e-01 0.0589 0.047 0.616 NK_CD56dim LOneK1K
ENSG00000243725 TTC4 880570 sc-eQTL 7.59e-02 0.149 0.0834 0.616 NK_CD56dim LOneK1K

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000116133 DHCR24 709236 eQTL 0.0396 -0.0565 0.0274 0.0 0.0 0.388

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina